Wall clock time and date at job start Tue Mar 31 2020 06:28:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00280 * 2 1 4 4 H 1.48497 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47290 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.47008 * 60.00229 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 H 1.09005 * 115.53949 * 350.59573 * 15 14 12 17 17 C 1.53039 * 117.48379 * 205.00064 * 15 14 12 18 18 H 1.08995 * 119.41385 * 4.10314 * 17 15 14 19 19 C 1.53440 * 118.58130 * 161.07585 * 17 15 14 20 20 C 1.50972 * 107.03598 * 63.00878 * 19 17 15 21 21 C 1.38780 * 129.72468 * 180.32791 * 20 19 17 22 22 C 1.38021 * 120.31186 * 179.97438 * 21 20 19 23 23 C 1.38246 * 119.87819 * 359.97062 * 22 21 20 24 24 C 1.38016 * 119.88519 * 0.03067 * 23 22 21 25 25 C 1.37808 * 110.46058 * 0.27443 * 20 19 17 26 26 C 1.50941 * 110.47846 * 0.10233 * 25 20 19 27 27 H 1.09006 * 117.43845 * 139.24565 * 26 25 20 28 28 H 0.96996 * 119.99509 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47154 * 60.00159 * 9 7 2 30 30 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 31 31 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 32 32 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 34 34 H 1.08994 * 109.47405 * 299.99855 * 11 10 9 35 35 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 36 36 H 1.08998 * 109.92544 * 182.35298 * 19 17 15 37 37 H 1.09004 * 109.92576 * 303.66615 * 19 17 15 38 38 H 1.08004 * 119.84358 * 359.91635 * 21 20 19 39 39 H 1.07998 * 120.06244 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.05731 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.84262 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4594 -6.1325 -0.0031 13 8 3.6519 -5.9110 -0.0043 14 7 2.0102 -7.4032 0.0027 15 6 2.9621 -8.5167 0.0070 16 1 4.0049 -8.2442 -0.1556 17 6 2.4854 -9.8556 -0.5607 18 1 1.4933 -9.9251 -1.0067 19 6 3.5370 -10.8915 -0.9795 20 6 4.3001 -11.2753 0.2653 21 6 5.3522 -12.1669 0.4211 22 6 5.9131 -12.3718 1.6655 23 6 5.4256 -11.6856 2.7621 24 6 4.3793 -10.7986 2.6089 25 6 3.8140 -10.5912 1.3584 26 6 2.6772 -9.6854 0.9518 27 1 1.8180 -9.6267 1.6201 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8898 31 1 2.8726 -3.6047 0.8877 32 1 2.8712 -3.6040 -0.8922 33 1 0.8525 -5.0447 -0.8905 34 1 0.8545 -5.0450 0.8894 35 1 1.0565 -7.5805 0.0040 36 1 3.0466 -11.7695 -1.3999 37 1 4.2165 -10.4558 -1.7121 38 1 5.7332 -12.7036 -0.4352 39 1 6.7314 -13.0668 1.7822 40 1 5.8626 -11.8434 3.7371 41 1 3.9992 -10.2626 3.4660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000593993088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:16 Heat of formation + Delta-G solvation = -2.553478 kcal Electronic energy + Delta-G solvation = -20690.991739 eV Core-core repulsion = 17535.492581 eV Total energy + Delta-G solvation = -3155.499158 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.11915 -39.35049 -37.41812 -34.21268 -33.88312 -32.06582 -31.68215 -30.27444 -28.10695 -27.63259 -24.32025 -23.21007 -22.13558 -20.82217 -20.73935 -20.63823 -19.70914 -17.01673 -16.91958 -16.25685 -16.05374 -15.45965 -15.27941 -15.25077 -14.42857 -14.09151 -13.79080 -13.61363 -13.46346 -13.17564 -12.87892 -12.76356 -12.28661 -12.22286 -11.81661 -11.57956 -11.51340 -11.24738 -11.08653 -10.81846 -10.60874 -10.51633 -10.33005 -9.74946 -9.67999 -9.32996 -9.25117 -9.02102 -9.00140 -8.46579 -8.31842 -5.97345 -3.98555 1.03900 1.10847 2.73547 2.95912 3.31192 3.34230 3.41519 3.47463 3.66719 4.22166 4.30950 4.49376 4.50094 4.57745 4.76810 4.79950 4.84953 4.96766 5.11825 5.24479 5.29020 5.38904 5.45071 5.49250 5.61221 5.67390 5.69718 5.74459 5.78339 5.90688 6.16411 6.23618 6.25135 6.33609 6.47266 6.72114 6.72309 6.92780 7.16187 7.50999 7.71590 7.83875 8.03469 8.37959 8.47523 9.08792 9.65480 11.14220 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.002376 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.057425 B =11783.523451 C =12097.285588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.898 5.898 2 C 0.055 3.945 3 Si 0.892 3.108 4 H -0.272 1.272 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.517 4.517 8 H 0.057 0.943 9 C 0.020 3.980 10 C -0.095 4.095 11 C -0.137 4.137 12 C 0.518 3.482 13 O -0.532 6.532 14 N -0.710 5.710 15 C 0.130 3.870 16 H 0.136 0.864 17 C -0.168 4.168 18 H 0.125 0.875 19 C -0.051 4.051 20 C -0.095 4.095 21 C -0.108 4.108 22 C -0.120 4.120 23 C -0.121 4.121 24 C -0.100 4.100 25 C -0.060 4.060 26 C -0.141 4.141 27 H 0.119 0.881 28 H 0.259 0.741 29 H 0.016 0.984 30 H 0.016 0.984 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.402 0.598 36 H 0.086 0.914 37 H 0.085 0.915 38 H 0.121 0.879 39 H 0.124 0.876 40 H 0.124 0.876 41 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.906 -27.979 1.305 28.436 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.146 4.146 3 Si 0.720 3.280 4 H -0.197 1.197 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.555 4.555 8 H 0.075 0.925 9 C -0.017 4.017 10 C -0.134 4.134 11 C -0.177 4.177 12 C 0.306 3.694 13 O -0.406 6.406 14 N -0.361 5.361 15 C 0.022 3.978 16 H 0.154 0.846 17 C -0.187 4.187 18 H 0.142 0.858 19 C -0.088 4.088 20 C -0.095 4.095 21 C -0.126 4.126 22 C -0.138 4.138 23 C -0.139 4.139 24 C -0.118 4.118 25 C -0.061 4.061 26 C -0.161 4.161 27 H 0.137 0.863 28 H 0.069 0.931 29 H 0.034 0.966 30 H 0.034 0.966 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.237 0.763 36 H 0.104 0.896 37 H 0.104 0.896 38 H 0.139 0.861 39 H 0.142 0.858 40 H 0.142 0.858 41 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 5.626 -27.646 1.296 28.242 hybrid contribution -0.202 0.693 0.156 0.739 sum 5.424 -26.953 1.452 27.531 Atomic orbital electron populations 1.69973 1.06032 1.26422 1.51330 1.25026 0.94867 0.99279 0.95413 0.86535 0.80243 0.83744 0.77512 1.19677 1.21046 1.21044 1.21312 0.93238 0.90988 1.49966 0.92511 1.19141 0.93971 0.91470 0.97151 1.21459 0.98670 0.91446 1.01782 1.21860 0.98064 0.93830 1.03934 1.21358 0.90539 0.83327 0.74139 1.90686 1.17379 1.84496 1.48074 1.45509 1.09208 1.04907 1.76451 1.21437 0.95748 0.81322 0.99246 0.84627 1.23461 1.01354 0.97546 0.96330 0.85750 1.20237 0.95705 0.97532 0.95297 1.20490 0.96652 0.96972 0.95407 1.20630 0.95963 0.98384 0.97656 1.21031 1.00037 1.00074 0.92615 1.21041 0.96929 0.96988 0.98979 1.20737 0.96329 0.98298 0.96463 1.19631 0.96055 0.96821 0.93571 1.22047 0.99148 1.01444 0.93443 0.86316 0.93133 0.96570 0.96578 0.92650 0.92622 0.89152 0.89171 0.76324 0.89578 0.89644 0.86132 0.85833 0.85789 0.86078 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.13 13.29 55.43 0.74 -26.39 16 2 C 0.05 1.60 5.46 -17.82 -0.10 1.50 16 3 Si 0.89 22.09 29.54 -169.99 -5.02 17.07 16 4 H -0.27 -6.65 7.11 56.52 0.40 -6.25 16 5 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 6 H -0.28 -6.94 7.11 56.52 0.40 -6.54 16 7 C -0.52 -15.00 9.11 -34.44 -0.31 -15.31 16 8 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 9 C 0.02 0.51 4.97 -27.88 -0.14 0.37 16 10 C -0.10 -2.06 4.44 -26.74 -0.12 -2.18 16 11 C -0.14 -2.22 5.70 -27.88 -0.16 -2.38 16 12 C 0.52 8.26 7.83 -10.98 -0.09 8.17 16 13 O -0.53 -10.70 15.55 5.55 0.09 -10.62 16 14 N -0.71 -8.31 5.56 -53.81 -0.30 -8.61 16 15 C 0.13 1.48 6.01 -67.93 -0.41 1.07 16 16 H 0.14 1.89 7.40 -51.93 -0.38 1.50 16 17 C -0.17 -1.44 7.03 -90.16 -0.63 -2.08 16 18 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 19 C -0.05 -0.41 6.57 -27.52 -0.18 -0.59 16 20 C -0.10 -0.92 6.12 -104.45 -0.64 -1.56 16 21 C -0.11 -0.93 10.04 -39.46 -0.40 -1.33 16 22 C -0.12 -0.98 10.05 -39.66 -0.40 -1.37 16 23 C -0.12 -1.05 10.04 -39.66 -0.40 -1.45 16 24 C -0.10 -0.99 10.04 -39.46 -0.40 -1.39 16 25 C -0.06 -0.63 5.94 -104.46 -0.62 -1.26 16 26 C -0.14 -1.39 6.80 -91.47 -0.62 -2.01 16 27 H 0.12 1.06 8.14 -51.93 -0.42 0.64 16 28 H 0.26 7.36 8.31 -40.82 -0.34 7.02 16 29 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 31 H 0.05 1.24 8.10 -51.93 -0.42 0.82 16 32 H 0.05 1.25 8.10 -51.93 -0.42 0.83 16 33 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 34 H 0.09 1.32 8.14 -51.93 -0.42 0.89 16 35 H 0.40 3.43 8.83 -40.82 -0.36 3.07 16 36 H 0.09 0.56 8.14 -51.93 -0.42 0.13 16 37 H 0.09 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.12 0.79 8.06 -52.48 -0.42 0.36 16 39 H 0.12 0.72 8.06 -52.49 -0.42 0.30 16 40 H 0.12 0.80 8.06 -52.49 -0.42 0.38 16 41 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 LS Contribution 347.25 15.07 5.23 5.23 Total: -1.00 -33.95 347.25 -11.07 -45.02 By element: Atomic # 1 Polarization: 6.28 SS G_CDS: -6.20 Total: 0.08 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -5.61 Total: -21.79 kcal Atomic # 7 Polarization: -35.44 SS G_CDS: 0.44 Total: -35.00 kcal Atomic # 8 Polarization: -10.70 SS G_CDS: 0.09 Total: -10.62 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 5.23 Total: 5.23 kcal Total: -33.95 -11.07 -45.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593993088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.471 kcal (2) G-P(sol) polarization free energy of solvation -33.953 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.072 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.025 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.553 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds