Wall clock time and date at job start Tue Mar 31 2020 06:28:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86802 * 120.00280 * 2 1 4 4 H 1.48497 * 109.47271 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47290 * 300.00570 * 3 2 1 6 6 H 1.48500 * 109.47008 * 60.00229 * 3 2 1 7 7 C 1.37876 * 119.99994 * 180.02562 * 2 1 3 8 8 H 1.07999 * 120.00505 * 179.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 359.97438 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 H 1.09005 * 115.53949 * 350.59573 * 15 14 12 17 17 C 1.53039 * 117.48379 * 205.00064 * 15 14 12 18 18 H 1.08995 * 119.41385 * 4.10314 * 17 15 14 19 19 C 1.53440 * 118.58130 * 161.07585 * 17 15 14 20 20 C 1.50972 * 107.03598 * 63.00878 * 19 17 15 21 21 C 1.38780 * 129.72468 * 180.32791 * 20 19 17 22 22 C 1.38021 * 120.31186 * 179.97438 * 21 20 19 23 23 C 1.38246 * 119.87819 * 359.97062 * 22 21 20 24 24 C 1.38016 * 119.88519 * 0.03067 * 23 22 21 25 25 C 1.37808 * 110.46058 * 0.27443 * 20 19 17 26 26 C 1.50941 * 110.47846 * 0.10233 * 25 20 19 27 27 H 1.09006 * 117.43845 * 139.24565 * 26 25 20 28 28 H 0.96996 * 119.99509 * 359.97438 * 1 2 3 29 29 H 1.08998 * 109.47154 * 60.00159 * 9 7 2 30 30 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 31 31 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 32 32 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 34 34 H 1.08994 * 109.47405 * 299.99855 * 11 10 9 35 35 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 36 36 H 1.08998 * 109.92544 * 182.35298 * 19 17 15 37 37 H 1.09004 * 109.92576 * 303.66615 * 19 17 15 38 38 H 1.08004 * 119.84358 * 359.91635 * 21 20 19 39 39 H 1.07998 * 120.06244 * 179.97438 * 22 21 20 40 40 H 1.07998 * 120.05731 * 180.02562 * 23 22 21 41 41 H 1.07998 * 119.84262 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 -0.0006 5 1 1.8904 2.3965 -1.2124 6 1 1.8905 2.3964 1.2125 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2452 -3.6621 -0.0018 11 6 1.4802 -4.9871 -0.0012 12 6 2.4594 -6.1325 -0.0031 13 8 3.6519 -5.9110 -0.0043 14 7 2.0102 -7.4032 0.0027 15 6 2.9621 -8.5167 0.0070 16 1 4.0049 -8.2442 -0.1556 17 6 2.4854 -9.8556 -0.5607 18 1 1.4933 -9.9251 -1.0067 19 6 3.5370 -10.8915 -0.9795 20 6 4.3001 -11.2753 0.2653 21 6 5.3522 -12.1669 0.4211 22 6 5.9131 -12.3718 1.6655 23 6 5.4256 -11.6856 2.7621 24 6 4.3793 -10.7986 2.6089 25 6 3.8140 -10.5912 1.3584 26 6 2.6772 -9.6854 0.9518 27 1 1.8180 -9.6267 1.6201 28 1 -0.4849 0.8401 0.0004 29 1 0.6240 -2.5567 -0.8903 30 1 0.6247 -2.5571 0.8898 31 1 2.8726 -3.6047 0.8877 32 1 2.8712 -3.6040 -0.8922 33 1 0.8525 -5.0447 -0.8905 34 1 0.8545 -5.0450 0.8894 35 1 1.0565 -7.5805 0.0040 36 1 3.0466 -11.7695 -1.3999 37 1 4.2165 -10.4558 -1.7121 38 1 5.7332 -12.7036 -0.4352 39 1 6.7314 -13.0668 1.7822 40 1 5.8626 -11.8434 3.7371 41 1 3.9992 -10.2626 3.4660 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593993088.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:15 Heat of formation + Delta-G solvation = -21.972254 kcal Electronic energy + Delta-G solvation = -20691.833800 eV Core-core repulsion = 17535.492581 eV Total energy + Delta-G solvation = -3156.341219 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.87931 -40.53628 -38.21748 -36.12857 -34.92884 -34.00042 -32.42961 -31.12294 -29.62811 -28.53751 -26.02755 -24.24918 -22.95670 -22.25652 -21.66484 -21.37776 -21.07740 -18.61163 -17.93127 -17.72243 -17.01904 -16.70811 -16.48406 -16.08187 -16.01002 -15.19812 -15.03457 -14.54185 -14.44543 -14.25768 -13.98143 -13.72392 -13.67254 -13.49112 -13.15215 -12.90965 -12.64256 -12.52880 -12.39105 -12.24234 -12.18170 -11.73917 -11.55709 -11.48440 -11.25938 -11.12162 -10.81707 -10.54588 -10.18165 -9.69140 -9.24571 -8.20539 -6.30136 0.35035 0.43790 1.39182 1.39576 1.53372 1.53901 1.94670 2.41642 2.54976 2.93736 3.12478 3.49223 3.56531 3.71782 3.82872 3.92560 4.11138 4.16080 4.19893 4.24112 4.27390 4.37143 4.58838 4.64723 4.71766 4.83576 4.85406 4.92306 4.97216 5.01084 5.10548 5.11734 5.19505 5.25131 5.42865 5.51778 5.54867 5.59328 5.70896 5.75888 5.87247 6.08315 6.27681 6.49530 6.85434 7.22172 7.38477 8.91136 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.035840 B = 0.002376 C = 0.002314 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 781.057425 B =11783.523451 C =12097.285588 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.269 1.269 5 H -0.275 1.275 6 H -0.275 1.275 7 C -0.546 4.546 8 H 0.050 0.950 9 C 0.025 3.975 10 C -0.084 4.084 11 C -0.128 4.128 12 C 0.521 3.479 13 O -0.583 6.583 14 N -0.687 5.687 15 C 0.102 3.898 16 H 0.104 0.896 17 C -0.140 4.140 18 H 0.151 0.849 19 C -0.052 4.052 20 C -0.108 4.108 21 C -0.117 4.117 22 C -0.123 4.123 23 C -0.130 4.130 24 C -0.120 4.120 25 C -0.088 4.088 26 C -0.138 4.138 27 H 0.129 0.871 28 H 0.265 0.735 29 H 0.003 0.997 30 H 0.002 0.998 31 H 0.039 0.961 32 H 0.040 0.960 33 H 0.113 0.887 34 H 0.111 0.889 35 H 0.421 0.579 36 H 0.109 0.891 37 H 0.086 0.914 38 H 0.141 0.859 39 H 0.148 0.852 40 H 0.143 0.857 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.682 -29.492 0.974 29.878 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.193 1.193 5 H -0.200 1.200 6 H -0.201 1.201 7 C -0.585 4.585 8 H 0.068 0.932 9 C -0.012 4.012 10 C -0.122 4.122 11 C -0.167 4.167 12 C 0.310 3.690 13 O -0.462 6.462 14 N -0.338 5.338 15 C -0.005 4.005 16 H 0.122 0.878 17 C -0.159 4.159 18 H 0.169 0.831 19 C -0.089 4.089 20 C -0.108 4.108 21 C -0.135 4.135 22 C -0.141 4.141 23 C -0.148 4.148 24 C -0.138 4.138 25 C -0.088 4.088 26 C -0.158 4.158 27 H 0.146 0.854 28 H 0.073 0.927 29 H 0.021 0.979 30 H 0.020 0.980 31 H 0.057 0.943 32 H 0.059 0.941 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.259 0.741 36 H 0.127 0.873 37 H 0.105 0.895 38 H 0.159 0.841 39 H 0.166 0.834 40 H 0.160 0.840 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges 5.362 -29.210 0.966 29.713 hybrid contribution -0.104 1.082 0.285 1.124 sum 5.258 -28.128 1.250 28.642 Atomic orbital electron populations 1.70068 1.07439 1.27714 1.51674 1.25902 0.95848 1.03047 0.94740 0.85453 0.78859 0.79046 0.78032 1.19323 1.20020 1.20052 1.21719 0.93304 0.92860 1.50570 0.93186 1.19027 0.94194 0.92282 0.95658 1.21172 0.97677 0.93052 1.00276 1.21681 0.97736 0.91175 1.06119 1.21170 0.89502 0.84532 0.73842 1.90673 1.19263 1.85347 1.50906 1.45165 1.10342 1.03675 1.74573 1.21347 0.94372 0.82054 1.02695 0.87779 1.23585 1.02337 0.94644 0.95374 0.83149 1.20335 0.95653 0.98148 0.94776 1.20787 0.97125 0.97144 0.95740 1.20969 0.95640 0.98249 0.98662 1.21400 1.00341 1.00016 0.92301 1.21346 0.96576 0.96614 1.00223 1.20967 0.97122 0.99074 0.96636 1.19879 0.96952 0.97717 0.94271 1.22056 0.99299 0.99849 0.94554 0.85365 0.92657 0.97864 0.97960 0.94250 0.94079 0.86863 0.87060 0.74100 0.87264 0.89537 0.84099 0.83419 0.83956 0.85876 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.41 13.29 21.45 0.28 -56.12 16 2 C 0.00 0.15 5.46 84.65 0.46 0.61 16 3 Si 0.96 45.45 29.54 68.60 2.03 47.48 16 4 H -0.27 -12.45 7.11 99.48 0.71 -11.75 16 5 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 6 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 7 C -0.55 -32.34 9.11 25.60 0.23 -32.11 16 8 H 0.05 2.95 7.74 -2.91 -0.02 2.92 16 9 C 0.03 1.35 4.97 29.85 0.15 1.50 16 10 C -0.08 -3.69 4.44 30.59 0.14 -3.55 16 11 C -0.13 -4.05 5.70 29.85 0.17 -3.88 16 12 C 0.52 16.54 7.83 87.66 0.69 17.23 16 13 O -0.58 -24.26 15.55 -3.04 -0.05 -24.30 16 14 N -0.69 -15.28 5.56 -442.53 -2.46 -17.74 16 15 C 0.10 2.28 6.01 44.99 0.27 2.55 16 16 H 0.10 3.04 7.40 -2.38 -0.02 3.02 16 17 C -0.14 -2.12 7.03 -10.50 -0.07 -2.20 16 18 H 0.15 1.51 8.14 -2.39 -0.02 1.49 16 19 C -0.05 -0.74 6.57 30.08 0.20 -0.54 16 20 C -0.11 -1.95 6.12 -19.75 -0.12 -2.07 16 21 C -0.12 -1.83 10.04 22.35 0.22 -1.61 16 22 C -0.12 -1.80 10.05 22.22 0.22 -1.58 16 23 C -0.13 -2.12 10.04 22.22 0.22 -1.89 16 24 C -0.12 -2.35 10.04 22.35 0.22 -2.13 16 25 C -0.09 -1.80 5.94 -19.76 -0.12 -1.92 16 26 C -0.14 -2.58 6.80 -11.34 -0.08 -2.66 16 27 H 0.13 2.10 8.14 -2.38 -0.02 2.08 16 28 H 0.26 14.99 8.31 -92.71 -0.77 14.22 16 29 H 0.00 0.16 8.14 -2.39 -0.02 0.14 16 30 H 0.00 0.11 8.14 -2.39 -0.02 0.09 16 31 H 0.04 1.83 8.10 -2.38 -0.02 1.81 16 32 H 0.04 1.90 8.10 -2.39 -0.02 1.88 16 33 H 0.11 3.10 8.14 -2.38 -0.02 3.08 16 34 H 0.11 3.08 8.14 -2.39 -0.02 3.06 16 35 H 0.42 6.16 8.83 -92.71 -0.82 5.34 16 36 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 37 H 0.09 1.23 8.14 -2.38 -0.02 1.21 16 38 H 0.14 1.52 8.06 -2.91 -0.02 1.50 16 39 H 0.15 1.36 8.06 -2.91 -0.02 1.34 16 40 H 0.14 1.66 8.06 -2.91 -0.02 1.64 16 41 H 0.12 2.20 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -75.09 347.25 2.82 -72.28 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 0.20 Total: 12.66 kcal Atomic # 6 Polarization: -37.06 SS G_CDS: 2.81 Total: -34.25 kcal Atomic # 7 Polarization: -71.69 SS G_CDS: -2.18 Total: -73.86 kcal Atomic # 8 Polarization: -24.26 SS G_CDS: -0.05 Total: -24.30 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 2.03 Total: 47.48 kcal Total: -75.09 2.82 -72.28 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593993088.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.306 kcal (2) G-P(sol) polarization free energy of solvation -75.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.815 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.278 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds