Wall clock time and date at job start Tue Mar 31 2020 06:28:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86798 * 120.00046 * 2 1 4 4 H 1.48497 * 109.47180 * 269.99898 * 3 2 1 5 5 H 1.48503 * 109.46903 * 29.99877 * 3 2 1 6 6 H 1.48498 * 109.47152 * 149.99643 * 3 2 1 7 7 C 1.37876 * 119.99869 * 179.97438 * 2 1 3 8 8 H 1.07999 * 120.00505 * 359.97438 * 7 2 1 9 9 C 1.50708 * 119.99904 * 180.02562 * 7 2 1 10 10 C 1.52994 * 109.47076 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47118 * 179.97438 * 10 9 7 12 12 C 1.50702 * 109.47159 * 179.97438 * 11 10 9 13 13 O 1.21283 * 120.00262 * 0.02562 * 12 11 10 14 14 N 1.34777 * 119.99928 * 179.72352 * 12 11 10 15 15 C 1.46499 * 120.00199 * 180.27479 * 14 12 11 16 16 H 1.09005 * 115.54066 * 350.80817 * 15 14 12 17 17 C 1.53040 * 117.48380 * 205.21487 * 15 14 12 18 18 H 1.09004 * 119.41291 * 140.82481 * 17 15 14 19 19 C 1.53435 * 118.57644 * 343.84822 * 17 15 14 20 20 C 1.50973 * 107.03425 * 297.00441 * 19 17 15 21 21 C 1.38782 * 129.72546 * 179.72476 * 20 19 17 22 22 C 1.38016 * 120.31418 * 179.97438 * 21 20 19 23 23 C 1.38242 * 119.87747 * 359.97438 * 22 21 20 24 24 C 1.38022 * 119.88774 * 0.02562 * 23 22 21 25 25 C 1.37809 * 110.45924 * 359.68679 * 20 19 17 26 26 C 1.50941 * 110.48461 * 359.94597 * 25 20 19 27 27 H 1.08998 * 117.16323 * 220.05053 * 26 25 20 28 28 H 0.96996 * 120.00354 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47154 * 60.00159 * 9 7 2 30 30 H 1.09003 * 109.46515 * 299.99635 * 9 7 2 31 31 H 1.09004 * 109.47131 * 59.99662 * 10 9 7 32 32 H 1.09000 * 109.47504 * 299.99966 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00025 * 11 10 9 34 34 H 1.08994 * 109.47405 * 299.99855 * 11 10 9 35 35 H 0.97000 * 120.00317 * 0.28382 * 14 12 11 36 36 H 1.09005 * 109.92016 * 177.66200 * 19 17 15 37 37 H 1.09002 * 110.09161 * 56.44659 * 19 17 15 38 38 H 1.08003 * 119.84053 * 359.97438 * 21 20 19 39 39 H 1.08000 * 120.06069 * 180.02562 * 22 21 20 40 40 H 1.08004 * 120.05661 * 180.02562 * 23 22 21 41 41 H 1.07996 * 119.84044 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4000 5 1 1.4465 2.6526 0.7000 6 1 3.5466 1.4402 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 1.4645 -2.1294 0.0014 9 6 3.5116 -1.1941 0.0011 10 6 4.0215 -2.6365 0.0023 11 6 5.5515 -2.6365 0.0022 12 6 6.0538 -4.0574 0.0040 13 8 5.2657 -4.9793 0.0047 14 7 7.3789 -4.3037 -0.0014 15 6 7.8672 -5.6848 -0.0057 16 1 7.1091 -6.4519 0.1528 17 6 9.2629 -5.9423 0.5670 18 1 9.4395 -6.8364 1.1650 19 6 10.2091 -4.7497 0.7584 20 6 10.4781 -4.1744 -0.6112 21 6 11.2623 -3.0902 -0.9794 22 6 11.3730 -2.7293 -2.3069 23 6 10.7002 -3.4512 -3.2751 24 6 9.9198 -4.5297 -2.9108 25 6 9.8072 -4.8939 -1.5762 26 6 9.0254 -6.0211 -0.9465 27 1 9.0189 -6.9762 -1.4716 28 1 -0.4850 0.8400 -0.0004 29 1 3.8745 -0.6801 0.8911 30 1 3.8751 -0.6805 -0.8889 31 1 3.6585 -3.1510 -0.8875 32 1 3.6579 -3.1498 0.8925 33 1 5.9148 -2.1220 0.8918 34 1 5.9148 -2.1235 -0.8881 35 1 8.0092 -3.5664 -0.0022 36 1 11.1427 -5.0852 1.2103 37 1 9.7396 -3.9971 1.3918 38 1 11.7885 -2.5261 -0.2234 39 1 11.9847 -1.8851 -2.5889 40 1 10.7851 -3.1716 -4.3149 41 1 9.3949 -5.0933 -3.6678 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000593993089.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:18 Heat of formation + Delta-G solvation = -18.500824 kcal Electronic energy + Delta-G solvation = -21347.982267 eV Core-core repulsion = 18191.791580 eV Total energy + Delta-G solvation = -3156.190686 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.06380 -40.40881 -38.18745 -36.14596 -34.53688 -34.08213 -32.54394 -31.28267 -30.08923 -28.59543 -25.92194 -24.25251 -22.90787 -22.24526 -21.42081 -21.29595 -20.93721 -18.95392 -18.19304 -17.48980 -16.81764 -16.74025 -16.36070 -16.23690 -15.65529 -15.37289 -15.13320 -14.82611 -14.70101 -14.37267 -13.89745 -13.78853 -13.64996 -13.49699 -13.23478 -12.71680 -12.71428 -12.51993 -12.25764 -12.10062 -11.79989 -11.74301 -11.71494 -11.50641 -11.33354 -11.22228 -10.80910 -10.74855 -10.07710 -9.66972 -9.25694 -8.27497 -6.33119 0.37839 0.45341 1.38517 1.41946 1.54079 1.55306 2.08619 2.39278 2.56555 2.92017 3.07564 3.41301 3.55525 3.77928 3.82166 3.93559 4.12503 4.13782 4.17766 4.23328 4.27384 4.50693 4.56787 4.66383 4.70203 4.84288 4.87522 4.89469 4.89676 4.94883 5.02901 5.03897 5.14430 5.26615 5.43493 5.54614 5.56476 5.59445 5.62838 5.67935 5.72490 6.09766 6.30862 6.47645 6.75454 7.21537 7.31267 8.90238 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020060 B = 0.003332 C = 0.003053 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1395.500077 B = 8400.925888 C = 9167.702996 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.957 5.957 2 C -0.003 4.003 3 Si 0.961 3.039 4 H -0.265 1.265 5 H -0.285 1.285 6 H -0.236 1.236 7 C -0.540 4.540 8 H 0.020 0.980 9 C -0.009 4.009 10 C -0.080 4.080 11 C -0.132 4.132 12 C 0.518 3.482 13 O -0.582 6.582 14 N -0.690 5.690 15 C 0.099 3.901 16 H 0.133 0.867 17 C -0.141 4.141 18 H 0.150 0.850 19 C -0.057 4.057 20 C -0.109 4.109 21 C -0.112 4.112 22 C -0.123 4.123 23 C -0.128 4.128 24 C -0.120 4.120 25 C -0.081 4.081 26 C -0.143 4.143 27 H 0.127 0.873 28 H 0.266 0.734 29 H 0.031 0.969 30 H 0.028 0.972 31 H 0.036 0.964 32 H 0.039 0.961 33 H 0.118 0.882 34 H 0.112 0.888 35 H 0.411 0.589 36 H 0.106 0.894 37 H 0.090 0.910 38 H 0.142 0.858 39 H 0.145 0.855 40 H 0.138 0.862 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.043 -7.210 -1.463 32.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.598 5.598 2 C -0.199 4.199 3 Si 0.783 3.217 4 H -0.190 1.190 5 H -0.211 1.211 6 H -0.159 1.159 7 C -0.578 4.578 8 H 0.038 0.962 9 C -0.047 4.047 10 C -0.118 4.118 11 C -0.171 4.171 12 C 0.306 3.694 13 O -0.462 6.462 14 N -0.340 5.340 15 C -0.007 4.007 16 H 0.151 0.849 17 C -0.160 4.160 18 H 0.168 0.832 19 C -0.093 4.093 20 C -0.109 4.109 21 C -0.130 4.130 22 C -0.141 4.141 23 C -0.145 4.145 24 C -0.138 4.138 25 C -0.081 4.081 26 C -0.162 4.162 27 H 0.145 0.855 28 H 0.075 0.925 29 H 0.049 0.951 30 H 0.046 0.954 31 H 0.055 0.945 32 H 0.058 0.942 33 H 0.136 0.864 34 H 0.130 0.870 35 H 0.248 0.752 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.159 0.841 39 H 0.163 0.837 40 H 0.156 0.844 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 31.343 -7.757 -1.453 32.321 hybrid contribution -0.412 0.551 -0.367 0.780 sum 30.931 -7.205 -1.820 31.811 Atomic orbital electron populations 1.70102 1.08668 1.28296 1.52696 1.26184 0.95736 1.04079 0.93851 0.85507 0.79677 0.77140 0.79379 1.18956 1.21095 1.15920 1.21553 0.92647 0.92887 1.50709 0.96163 1.19548 0.93546 0.94284 0.97288 1.21035 0.93124 0.97214 1.00416 1.21723 0.96602 0.92481 1.06302 1.21140 0.82027 0.92148 0.74040 1.90676 1.56526 1.47893 1.51062 1.45321 1.06438 1.08021 1.74249 1.21838 0.90788 0.85654 1.02429 0.84924 1.23639 0.94718 1.01888 0.95799 0.83240 1.20321 0.99665 0.95823 0.93511 1.20708 0.97931 0.96408 0.95824 1.20952 0.98723 0.96327 0.96983 1.21372 0.99739 1.00243 0.92719 1.21318 0.97120 0.95345 1.00754 1.20915 0.99575 0.98106 0.95190 1.19782 0.98149 0.96396 0.93749 1.22167 1.01458 0.99193 0.93414 0.85491 0.92481 0.95051 0.95407 0.94534 0.94209 0.86421 0.86975 0.75165 0.87590 0.89140 0.84061 0.83706 0.84366 0.86260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -62.17 13.96 21.45 0.30 -61.87 16 2 C 0.00 -0.16 5.47 84.65 0.46 0.31 16 3 Si 0.96 44.24 27.47 68.60 1.88 46.12 16 4 H -0.26 -11.60 7.11 99.48 0.71 -10.90 16 5 H -0.29 -12.90 7.11 99.48 0.71 -12.20 16 6 H -0.24 -9.70 6.54 99.48 0.65 -9.05 16 7 C -0.54 -32.79 9.66 25.60 0.25 -32.54 16 8 H 0.02 1.38 7.99 -2.91 -0.02 1.35 16 9 C -0.01 -0.44 4.04 29.85 0.12 -0.32 16 10 C -0.08 -3.39 4.44 30.59 0.14 -3.25 16 11 C -0.13 -3.94 5.70 29.85 0.17 -3.77 16 12 C 0.52 16.11 7.83 87.66 0.69 16.80 16 13 O -0.58 -23.59 15.55 -3.04 -0.05 -23.64 16 14 N -0.69 -15.75 5.14 -442.53 -2.28 -18.02 16 15 C 0.10 2.03 6.37 44.99 0.29 2.32 16 16 H 0.13 3.16 7.40 -2.38 -0.02 3.14 16 17 C -0.14 -1.94 7.10 -10.50 -0.07 -2.01 16 18 H 0.15 1.43 8.14 -2.38 -0.02 1.41 16 19 C -0.06 -0.66 5.91 30.08 0.18 -0.49 16 20 C -0.11 -1.64 5.30 -19.75 -0.10 -1.74 16 21 C -0.11 -1.48 10.04 22.35 0.22 -1.26 16 22 C -0.12 -1.63 10.05 22.22 0.22 -1.41 16 23 C -0.13 -1.94 10.04 22.22 0.22 -1.72 16 24 C -0.12 -2.16 10.04 22.35 0.22 -1.94 16 25 C -0.08 -1.45 5.45 -19.76 -0.11 -1.56 16 26 C -0.14 -2.47 6.87 -11.34 -0.08 -2.54 16 27 H 0.13 1.98 8.14 -2.39 -0.02 1.96 16 28 H 0.27 16.00 8.31 -92.71 -0.77 15.23 16 29 H 0.03 1.39 7.20 -2.39 -0.02 1.38 16 30 H 0.03 1.23 7.57 -2.39 -0.02 1.21 16 31 H 0.04 1.69 8.10 -2.38 -0.02 1.67 16 32 H 0.04 1.82 8.10 -2.39 -0.02 1.80 16 33 H 0.12 2.87 8.14 -2.38 -0.02 2.85 16 34 H 0.11 2.86 8.14 -2.39 -0.02 2.84 16 35 H 0.41 7.63 6.81 -92.71 -0.63 7.00 16 36 H 0.11 0.89 8.14 -2.38 -0.02 0.87 16 37 H 0.09 0.98 7.88 -2.39 -0.02 0.96 16 38 H 0.14 1.24 8.06 -2.91 -0.02 1.21 16 39 H 0.15 1.25 8.06 -2.91 -0.02 1.22 16 40 H 0.14 1.58 8.06 -2.91 -0.02 1.56 16 41 H 0.12 2.03 8.06 -2.91 -0.02 2.01 16 Total: -1.00 -77.99 339.49 3.02 -74.98 By element: Atomic # 1 Polarization: 17.21 SS G_CDS: 0.34 Total: 17.55 kcal Atomic # 6 Polarization: -37.93 SS G_CDS: 2.82 Total: -35.11 kcal Atomic # 7 Polarization: -77.92 SS G_CDS: -1.98 Total: -79.90 kcal Atomic # 8 Polarization: -23.59 SS G_CDS: -0.05 Total: -23.64 kcal Atomic # 14 Polarization: 44.24 SS G_CDS: 1.88 Total: 46.12 kcal Total: -77.99 3.02 -74.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000593993089.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.475 kcal (2) G-P(sol) polarization free energy of solvation -77.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.519 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.976 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds