Wall clock time and date at job start Tue Mar 31 2020 05:36:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47258 * 239.99955 * 3 2 1 5 5 H 1.48504 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47227 * 119.99813 * 3 2 1 7 7 C 1.37877 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47389 * 180.02562 * 9 7 2 11 11 C 1.35351 * 126.75622 * 124.99671 * 10 9 7 12 12 N 1.35313 * 106.17259 * 179.97438 * 11 10 9 13 13 C 1.46510 * 125.86349 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47180 * 124.35815 * 13 12 11 15 15 H 1.08998 * 109.47289 * 54.55431 * 14 13 12 16 16 C 1.53003 * 109.46982 * 294.55657 * 14 13 12 17 17 C 1.52999 * 109.47226 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47176 * 59.99516 * 17 16 14 19 19 C 1.52995 * 109.47664 * 300.00355 * 18 17 16 20 20 C 1.52997 * 109.47306 * 174.55680 * 14 13 12 21 21 F 1.39899 * 109.46978 * 300.00164 * 20 14 13 22 22 F 1.39903 * 109.47293 * 59.99875 * 20 14 13 23 23 N 1.28714 * 108.26842 * 0.02562 * 12 11 10 24 24 N 1.28635 * 110.17466 * 359.71810 * 23 12 11 25 25 H 0.96999 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47110 * 59.99594 * 9 7 2 27 27 H 1.09006 * 109.46718 * 300.00143 * 9 7 2 28 28 H 1.07990 * 126.91227 * 0.03774 * 11 10 9 29 29 H 1.09006 * 109.46727 * 244.35954 * 13 12 11 30 30 H 1.08993 * 109.47060 * 4.35458 * 13 12 11 31 31 H 1.08998 * 109.46924 * 299.99997 * 16 14 13 32 32 H 1.08997 * 109.47512 * 60.00038 * 16 14 13 33 33 H 1.09000 * 109.47238 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.46589 * 299.99914 * 17 16 14 35 35 H 1.09004 * 109.47036 * 60.00673 * 18 17 16 36 36 H 1.09007 * 109.47348 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47737 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47153 * 300.00246 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 6 2.2831 -4.6641 0.8906 12 7 3.3136 -5.4501 0.5018 13 6 3.7530 -6.6800 1.1656 14 6 3.7532 -7.8313 0.1579 15 1 4.3574 -7.5572 -0.7069 16 6 2.3187 -8.1157 -0.2917 17 6 2.3187 -9.2674 -1.2989 18 6 2.9051 -10.5189 -0.6426 19 6 4.3396 -10.2345 -0.1929 20 6 4.3397 -9.0830 0.8137 21 9 5.6514 -8.8229 1.2249 22 9 3.5642 -9.4349 1.9237 23 7 3.8414 -4.9316 -0.5515 24 7 3.2148 -3.8569 -0.8786 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5572 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 1.6330 -4.8194 1.7388 29 1 4.7602 -6.5409 1.5585 30 1 3.0727 -6.9139 1.9844 31 1 1.7145 -8.3898 0.5731 32 1 1.9008 -7.2240 -0.7590 33 1 1.2967 -9.4703 -1.6189 34 1 2.9231 -8.9936 -2.1638 35 1 2.3007 -10.7927 0.2223 36 1 2.9056 -11.3393 -1.3603 37 1 4.7572 -11.1259 0.2750 38 1 4.9439 -9.9607 -1.0578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594655982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:06 Heat of formation + Delta-G solvation = -27.256981 kcal Electronic energy + Delta-G solvation = -22719.553211 eV Core-core repulsion = 19041.046050 eV Total energy + Delta-G solvation = -3678.507161 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.35362 -47.29085 -42.57070 -38.36916 -34.99422 -33.29683 -31.48776 -31.01913 -30.47947 -27.57298 -26.54875 -23.51801 -23.30909 -22.60130 -21.12564 -20.54742 -19.81151 -17.73397 -17.34464 -17.02567 -16.28232 -16.14516 -15.65329 -15.10696 -14.63465 -14.50227 -14.28672 -14.03165 -13.79860 -13.67212 -13.56858 -13.06320 -12.72309 -12.53190 -12.42577 -12.12613 -11.91019 -11.74070 -11.55859 -11.09956 -11.05041 -10.99025 -10.72075 -10.65769 -10.56009 -10.09538 -9.69930 -9.45032 -9.30342 -8.43274 -8.14229 -5.98599 -3.99215 2.18206 2.62941 3.39258 3.39345 3.41492 3.43022 3.51330 3.64858 3.87696 3.89852 4.28746 4.51777 4.52702 4.56595 4.69413 4.76759 4.84716 4.91110 5.11882 5.17640 5.22709 5.33835 5.38436 5.45260 5.53572 5.58092 5.72006 5.80839 5.84405 5.94401 6.05999 6.28952 7.10691 7.14491 7.52516 7.61930 7.99132 8.37431 9.03926 9.28281 9.63620 11.12498 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.003398 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.239147 B = 8237.151387 C = 8512.350622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.057 3.943 3 Si 0.897 3.103 4 H -0.275 1.275 5 H -0.287 1.287 6 H -0.278 1.278 7 C -0.504 4.504 8 H 0.058 0.942 9 C 0.092 3.908 10 C 0.035 3.965 11 C -0.080 4.080 12 N -0.301 5.301 13 C 0.124 3.876 14 C -0.138 4.138 15 H 0.118 0.882 16 C -0.116 4.116 17 C -0.123 4.123 18 C -0.119 4.119 19 C -0.156 4.156 20 C 0.298 3.702 21 F -0.198 7.198 22 F -0.197 7.197 23 N -0.109 5.109 24 N -0.259 5.259 25 H 0.262 0.738 26 H 0.039 0.961 27 H 0.036 0.964 28 H 0.181 0.819 29 H 0.099 0.901 30 H 0.107 0.893 31 H 0.075 0.925 32 H 0.080 0.920 33 H 0.074 0.926 34 H 0.070 0.930 35 H 0.073 0.927 36 H 0.078 0.922 37 H 0.089 0.911 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.193 -23.924 2.080 24.570 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.144 4.144 3 Si 0.725 3.275 4 H -0.201 1.201 5 H -0.213 1.213 6 H -0.203 1.203 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.102 4.102 11 C -0.229 4.229 12 N -0.097 5.097 13 C 0.001 3.999 14 C -0.158 4.158 15 H 0.136 0.864 16 C -0.154 4.154 17 C -0.161 4.161 18 C -0.157 4.157 19 C -0.194 4.194 20 C 0.262 3.738 21 F -0.179 7.179 22 F -0.178 7.178 23 N -0.088 5.088 24 N -0.126 5.126 25 H 0.071 0.929 26 H 0.057 0.943 27 H 0.054 0.946 28 H 0.198 0.802 29 H 0.118 0.882 30 H 0.125 0.875 31 H 0.094 0.906 32 H 0.099 0.901 33 H 0.093 0.907 34 H 0.088 0.912 35 H 0.092 0.908 36 H 0.096 0.904 37 H 0.108 0.892 38 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges 6.159 -23.949 1.063 24.751 hybrid contribution -0.190 0.928 1.220 1.544 sum 5.969 -23.021 2.283 23.892 Atomic orbital electron populations 1.69935 1.05966 1.26881 1.51042 1.24966 0.94877 0.99213 0.95311 0.86573 0.79493 0.82737 0.78741 1.20089 1.21314 1.20332 1.21008 0.93218 0.89786 1.50291 0.92351 1.17724 0.90873 0.87537 0.98501 1.23025 0.97846 0.97620 0.91667 1.23381 0.97395 0.96105 1.05985 1.47000 1.22633 1.19128 1.20904 1.21850 1.03229 0.80299 0.94504 1.22486 1.00667 0.92251 1.00357 0.86363 1.21603 0.93609 0.99972 1.00185 1.21594 1.02096 0.94049 0.98316 1.21543 0.94010 0.98638 1.01500 1.22510 1.00481 0.97326 0.99125 1.20974 0.74030 0.95951 0.82893 1.93029 1.37961 1.95172 1.91741 1.92997 1.75130 1.93260 1.56370 1.78169 1.21566 1.07374 1.01647 1.75087 1.06833 1.07095 1.23615 0.92859 0.94301 0.94557 0.80159 0.88247 0.87470 0.90622 0.90124 0.90692 0.91158 0.90789 0.90364 0.89239 0.88510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -26.66 13.29 55.43 0.74 -25.92 16 2 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 3 Si 0.90 22.18 29.54 -169.99 -5.02 17.16 16 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 5 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.50 -14.59 9.09 -34.44 -0.31 -14.90 16 8 H 0.06 1.73 7.74 -52.49 -0.41 1.32 16 9 C 0.09 2.41 5.55 -29.03 -0.16 2.25 16 10 C 0.04 0.81 6.44 -82.78 -0.53 0.27 16 11 C -0.08 -1.44 11.49 -17.05 -0.20 -1.64 16 12 N -0.30 -4.91 2.91 -61.26 -0.18 -5.09 16 13 C 0.12 1.43 5.60 -4.04 -0.02 1.41 16 14 C -0.14 -1.37 1.89 -90.62 -0.17 -1.54 16 15 H 0.12 1.28 8.00 -51.93 -0.42 0.87 16 16 C -0.12 -1.10 4.97 -26.73 -0.13 -1.23 16 17 C -0.12 -0.92 5.92 -26.73 -0.16 -1.08 16 18 C -0.12 -0.73 5.80 -26.74 -0.16 -0.89 16 19 C -0.16 -1.04 5.45 -26.76 -0.15 -1.19 16 20 C 0.30 2.68 1.63 -26.76 -0.04 2.63 16 21 F -0.20 -2.09 16.45 2.25 0.04 -2.06 16 22 F -0.20 -1.92 15.60 2.25 0.04 -1.88 16 23 N -0.11 -2.17 12.83 60.35 0.77 -1.39 16 24 N -0.26 -6.09 12.40 33.29 0.41 -5.68 16 25 H 0.26 7.35 8.31 -40.82 -0.34 7.01 16 26 H 0.04 1.08 8.14 -51.93 -0.42 0.65 16 27 H 0.04 0.94 8.12 -51.93 -0.42 0.51 16 28 H 0.18 2.59 8.06 -52.49 -0.42 2.17 16 29 H 0.10 1.12 7.65 -51.93 -0.40 0.72 16 30 H 0.11 1.02 7.88 -51.93 -0.41 0.61 16 31 H 0.08 0.67 7.80 -51.93 -0.41 0.27 16 32 H 0.08 0.97 7.77 -51.93 -0.40 0.57 16 33 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.47 7.80 -51.93 -0.41 0.07 16 36 H 0.08 0.37 8.14 -51.92 -0.42 -0.05 16 37 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.10 0.58 8.14 -51.93 -0.42 0.15 16 LS Contribution 321.62 15.07 4.85 4.85 Total: -1.00 -32.66 321.62 -5.84 -38.51 By element: Atomic # 1 Polarization: 1.22 SS G_CDS: -5.36 Total: -4.14 kcal Atomic # 6 Polarization: -12.23 SS G_CDS: -2.13 Total: -14.36 kcal Atomic # 7 Polarization: -39.83 SS G_CDS: 1.75 Total: -38.08 kcal Atomic # 9 Polarization: -4.01 SS G_CDS: 0.07 Total: -3.94 kcal Atomic # 14 Polarization: 22.18 SS G_CDS: -5.02 Total: 17.16 kcal Total LS contribution 4.85 Total: 4.85 kcal Total: -32.66 -5.84 -38.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.250 kcal (2) G-P(sol) polarization free energy of solvation -32.663 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.844 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.507 kcal (6) G-S(sol) free energy of system = (1) + (5) -27.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds