Wall clock time and date at job start Tue Mar 31 2020 05:36:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86794 * 120.00208 * 2 1 4 4 H 1.48503 * 109.47258 * 239.99955 * 3 2 1 5 5 H 1.48504 * 109.47043 * 359.97438 * 3 2 1 6 6 H 1.48497 * 109.47227 * 119.99813 * 3 2 1 7 7 C 1.37877 * 119.99907 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00099 * 180.02562 * 7 2 1 9 9 C 1.50708 * 120.00213 * 0.02562 * 7 2 1 10 10 C 1.50693 * 109.47389 * 180.02562 * 9 7 2 11 11 C 1.35351 * 126.75622 * 124.99671 * 10 9 7 12 12 N 1.35313 * 106.17259 * 179.97438 * 11 10 9 13 13 C 1.46510 * 125.86349 * 180.02562 * 12 11 10 14 14 C 1.52994 * 109.47180 * 124.35815 * 13 12 11 15 15 H 1.08998 * 109.47289 * 54.55431 * 14 13 12 16 16 C 1.53003 * 109.46982 * 294.55657 * 14 13 12 17 17 C 1.52999 * 109.47226 * 180.02562 * 16 14 13 18 18 C 1.52994 * 109.47176 * 59.99516 * 17 16 14 19 19 C 1.52995 * 109.47664 * 300.00355 * 18 17 16 20 20 C 1.52997 * 109.47306 * 174.55680 * 14 13 12 21 21 F 1.39899 * 109.46978 * 300.00164 * 20 14 13 22 22 F 1.39903 * 109.47293 * 59.99875 * 20 14 13 23 23 N 1.28714 * 108.26842 * 0.02562 * 12 11 10 24 24 N 1.28635 * 110.17466 * 359.71810 * 23 12 11 25 25 H 0.96999 * 119.99803 * 0.02562 * 1 2 3 26 26 H 1.08993 * 109.47110 * 59.99594 * 9 7 2 27 27 H 1.09006 * 109.46718 * 300.00143 * 9 7 2 28 28 H 1.07990 * 126.91227 * 0.03774 * 11 10 9 29 29 H 1.09006 * 109.46727 * 244.35954 * 13 12 11 30 30 H 1.08993 * 109.47060 * 4.35458 * 13 12 11 31 31 H 1.08998 * 109.46924 * 299.99997 * 16 14 13 32 32 H 1.08997 * 109.47512 * 60.00038 * 16 14 13 33 33 H 1.09000 * 109.47238 * 179.97438 * 17 16 14 34 34 H 1.09004 * 109.46589 * 299.99914 * 17 16 14 35 35 H 1.09004 * 109.47036 * 60.00673 * 18 17 16 36 36 H 1.09007 * 109.47348 * 180.02562 * 18 17 16 37 37 H 1.08997 * 109.47737 * 179.97438 * 19 18 17 38 38 H 1.09004 * 109.47153 * 300.00246 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1030 1.6963 -1.2125 5 1 1.2842 2.7464 -0.0006 6 1 3.1029 1.6963 1.2125 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 6 2.2302 -3.6447 0.0018 11 6 2.2831 -4.6641 0.8906 12 7 3.3136 -5.4501 0.5018 13 6 3.7530 -6.6800 1.1656 14 6 3.7532 -7.8313 0.1579 15 1 4.3574 -7.5572 -0.7069 16 6 2.3187 -8.1157 -0.2917 17 6 2.3187 -9.2674 -1.2989 18 6 2.9051 -10.5189 -0.6426 19 6 4.3396 -10.2345 -0.1929 20 6 4.3397 -9.0830 0.8137 21 9 5.6514 -8.8229 1.2249 22 9 3.5642 -9.4349 1.9237 23 7 3.8414 -4.9316 -0.5515 24 7 3.2148 -3.8569 -0.8786 25 1 -0.4850 0.8401 -0.0004 26 1 0.6247 -2.5572 -0.8896 27 1 0.6240 -2.5567 0.8903 28 1 1.6330 -4.8194 1.7388 29 1 4.7602 -6.5409 1.5585 30 1 3.0727 -6.9139 1.9844 31 1 1.7145 -8.3898 0.5731 32 1 1.9008 -7.2240 -0.7590 33 1 1.2967 -9.4703 -1.6189 34 1 2.9231 -8.9936 -2.1638 35 1 2.3007 -10.7927 0.2223 36 1 2.9056 -11.3393 -1.3603 37 1 4.7572 -11.1259 0.2750 38 1 4.9439 -9.9607 -1.0578 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594655982.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:05 Heat of formation + Delta-G solvation = -46.502080 kcal Electronic energy + Delta-G solvation = -22720.387741 eV Core-core repulsion = 19041.046050 eV Total energy + Delta-G solvation = -3679.341691 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -50.10413 -48.04848 -44.10296 -39.11272 -36.25400 -35.22953 -32.97571 -32.43622 -31.15048 -29.41791 -27.62275 -25.47539 -24.15296 -23.46724 -22.59008 -21.54160 -20.94543 -18.66304 -18.43465 -18.21950 -17.87926 -17.12435 -16.97419 -16.49745 -15.84407 -15.58216 -15.45982 -14.95169 -14.69660 -14.57658 -14.36610 -14.33037 -14.12134 -13.79161 -13.59079 -13.38974 -13.11285 -12.87174 -12.67192 -12.62222 -12.50088 -12.25860 -11.89757 -11.74533 -11.67376 -11.66562 -11.40795 -11.24690 -10.82000 -10.58153 -9.87761 -8.18757 -6.27419 0.71820 1.39906 1.41588 1.43828 1.51698 1.75255 2.44570 2.65113 2.93668 3.08399 3.14128 3.17596 3.49384 3.71693 3.77854 3.91369 3.96351 4.07325 4.18827 4.24078 4.29785 4.34607 4.45187 4.60458 4.65888 4.76712 4.87469 4.96486 4.97915 5.14247 5.16205 5.29035 5.35707 5.43437 5.54193 5.76134 5.76676 6.22279 6.80611 7.39195 7.68811 8.91981 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.036438 B = 0.003398 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 768.239147 B = 8237.151387 C = 8512.350622 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.926 5.926 2 C 0.009 3.991 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.276 1.276 6 H -0.269 1.269 7 C -0.526 4.526 8 H 0.044 0.956 9 C 0.103 3.897 10 C -0.005 4.005 11 C -0.050 4.050 12 N -0.281 5.281 13 C 0.111 3.889 14 C -0.133 4.133 15 H 0.108 0.892 16 C -0.113 4.113 17 C -0.122 4.122 18 C -0.113 4.113 19 C -0.155 4.155 20 C 0.301 3.699 21 F -0.208 7.208 22 F -0.199 7.199 23 N -0.115 5.115 24 N -0.305 5.305 25 H 0.266 0.734 26 H 0.009 0.991 27 H 0.034 0.966 28 H 0.222 0.778 29 H 0.108 0.892 30 H 0.136 0.864 31 H 0.085 0.915 32 H 0.051 0.949 33 H 0.080 0.920 34 H 0.066 0.934 35 H 0.075 0.925 36 H 0.097 0.903 37 H 0.103 0.897 38 H 0.104 0.896 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.784 -25.596 3.156 26.430 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.189 4.189 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.200 1.200 6 H -0.194 1.194 7 C -0.564 4.564 8 H 0.062 0.938 9 C 0.064 3.936 10 C -0.143 4.143 11 C -0.200 4.200 12 N -0.076 5.076 13 C -0.009 4.009 14 C -0.153 4.153 15 H 0.126 0.874 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.151 4.151 19 C -0.193 4.193 20 C 0.264 3.736 21 F -0.189 7.189 22 F -0.180 7.180 23 N -0.093 5.093 24 N -0.171 5.171 25 H 0.075 0.925 26 H 0.027 0.973 27 H 0.052 0.948 28 H 0.238 0.762 29 H 0.126 0.874 30 H 0.154 0.846 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.099 0.901 34 H 0.085 0.915 35 H 0.094 0.906 36 H 0.116 0.884 37 H 0.122 0.878 38 H 0.122 0.878 Dipole moment (debyes) X Y Z Total from point charges 6.772 -25.653 2.139 26.618 hybrid contribution -0.363 1.331 0.929 1.663 sum 6.410 -24.323 3.067 25.339 Atomic orbital electron populations 1.70029 1.07233 1.27989 1.51396 1.25777 0.95789 1.02626 0.94700 0.85570 0.78404 0.78646 0.78828 1.20097 1.20038 1.19420 1.21258 0.92775 0.91599 1.50774 0.93773 1.17382 0.91104 0.88275 0.96854 1.22638 0.98646 0.98858 0.94141 1.23733 0.96989 0.94086 1.05211 1.47297 1.21204 1.19560 1.19495 1.22365 1.04371 0.78737 0.95421 1.22431 1.01019 0.92232 0.99631 0.87423 1.21571 0.93081 0.99568 1.00885 1.21598 1.02654 0.93983 0.97734 1.21525 0.93382 0.98288 1.01883 1.22571 1.01166 0.96779 0.98751 1.21079 0.73324 0.96090 0.83121 1.93015 1.38671 1.95290 1.91884 1.92995 1.75160 1.93229 1.56630 1.78051 1.21595 1.06751 1.02939 1.75000 1.07967 1.08942 1.25214 0.92468 0.97277 0.94801 0.76176 0.87434 0.84627 0.89678 0.93066 0.90101 0.91514 0.90635 0.88423 0.87829 0.87785 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.66 13.29 21.45 0.28 -55.38 16 2 C 0.01 0.55 5.46 84.65 0.46 1.01 16 3 Si 0.96 45.77 29.54 68.60 2.03 47.80 16 4 H -0.28 -13.05 7.11 99.48 0.71 -12.34 16 5 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 6 H -0.27 -12.38 7.11 99.48 0.71 -11.67 16 7 C -0.53 -31.22 9.09 25.60 0.23 -30.99 16 8 H 0.04 2.68 7.74 -2.91 -0.02 2.66 16 9 C 0.10 5.54 5.55 29.10 0.16 5.70 16 10 C 0.00 -0.22 6.44 41.59 0.27 0.04 16 11 C -0.05 -1.75 11.49 83.49 0.96 -0.79 16 12 N -0.28 -8.81 2.91 -347.73 -1.01 -9.82 16 13 C 0.11 2.33 5.60 86.38 0.48 2.81 16 14 C -0.13 -2.43 1.89 -10.80 -0.02 -2.45 16 15 H 0.11 2.23 8.00 -2.39 -0.02 2.22 16 16 C -0.11 -1.98 4.97 30.60 0.15 -1.83 16 17 C -0.12 -1.60 5.92 30.59 0.18 -1.42 16 18 C -0.11 -1.06 5.80 30.59 0.18 -0.88 16 19 C -0.15 -1.64 5.45 30.58 0.17 -1.47 16 20 C 0.30 4.68 1.63 30.58 0.05 4.73 16 21 F -0.21 -3.96 16.45 44.97 0.74 -3.22 16 22 F -0.20 -3.33 15.60 44.97 0.70 -2.62 16 23 N -0.11 -4.57 12.83 37.02 0.48 -4.09 16 24 N -0.30 -14.71 12.40 -48.60 -0.60 -15.31 16 25 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 26 H 0.01 0.53 8.14 -2.39 -0.02 0.51 16 27 H 0.03 1.79 8.12 -2.38 -0.02 1.77 16 28 H 0.22 5.67 8.06 -2.92 -0.02 5.65 16 29 H 0.11 2.17 7.65 -2.38 -0.02 2.15 16 30 H 0.14 2.12 7.88 -2.39 -0.02 2.10 16 31 H 0.08 1.31 7.80 -2.39 -0.02 1.29 16 32 H 0.05 1.21 7.77 -2.39 -0.02 1.19 16 33 H 0.08 0.97 8.14 -2.39 -0.02 0.96 16 34 H 0.07 0.92 8.14 -2.38 -0.02 0.91 16 35 H 0.07 0.72 7.80 -2.38 -0.02 0.70 16 36 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 37 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 38 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 Total: -1.00 -72.19 321.62 6.94 -65.25 By element: Atomic # 1 Polarization: 1.87 SS G_CDS: 1.06 Total: 2.92 kcal Atomic # 6 Polarization: -28.79 SS G_CDS: 3.27 Total: -25.52 kcal Atomic # 7 Polarization: -83.75 SS G_CDS: -0.85 Total: -84.61 kcal Atomic # 9 Polarization: -7.29 SS G_CDS: 1.44 Total: -5.85 kcal Atomic # 14 Polarization: 45.77 SS G_CDS: 2.03 Total: 47.80 kcal Total: -72.19 6.94 -65.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655982.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.746 kcal (2) G-P(sol) polarization free energy of solvation -72.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.944 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.248 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds