Wall clock time and date at job start Tue Mar 31 2020 05:36:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99671 * 2 1 4 4 H 1.48505 * 109.47050 * 239.99660 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47064 * 120.00083 * 3 2 1 7 7 C 1.37876 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.35349 * 126.74891 * 124.99619 * 10 9 7 12 12 N 1.35312 * 106.17395 * 179.97438 * 11 10 9 13 13 C 1.46502 * 125.87232 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47203 * 124.99838 * 13 12 11 15 15 H 1.09001 * 109.46652 * 55.00507 * 14 13 12 16 16 C 1.53000 * 109.46886 * 175.00162 * 14 13 12 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47127 * 300.00449 * 17 16 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 20 20 C 1.52996 * 109.47302 * 295.00379 * 14 13 12 21 21 F 1.39891 * 109.47275 * 299.99764 * 20 14 13 22 22 F 1.39902 * 109.46876 * 60.00222 * 20 14 13 23 23 N 1.28721 * 108.26242 * 0.26693 * 12 11 10 24 24 N 1.28631 * 110.17627 * 359.55645 * 23 12 11 25 25 H 0.97007 * 120.00368 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47062 * 59.99867 * 9 7 2 27 27 H 1.09002 * 109.47414 * 300.00308 * 9 7 2 28 28 H 1.07997 * 126.91390 * 359.96628 * 11 10 9 29 29 H 1.09002 * 109.46745 * 5.00182 * 13 12 11 30 30 H 1.08994 * 109.47346 * 245.00738 * 13 12 11 31 31 H 1.09002 * 109.47398 * 300.00496 * 16 14 13 32 32 H 1.09001 * 109.47194 * 60.00677 * 16 14 13 33 33 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 34 34 H 1.08996 * 109.47853 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 36 36 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47045 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47375 * 59.99966 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.2838 -4.6643 0.8889 12 7 3.3140 -5.4502 0.4991 13 6 3.7539 -6.6804 1.1620 14 6 3.7686 -7.8278 0.1500 15 1 4.3854 -7.5504 -0.7049 16 6 4.3456 -9.0820 0.8095 17 6 4.3609 -10.2293 -0.2026 18 6 2.9333 -10.5121 -0.6747 19 6 2.3564 -9.2578 -1.3342 20 6 2.3408 -8.1104 -0.3215 21 9 1.5493 -8.4665 0.7756 22 9 1.8133 -6.9635 -0.9246 23 7 3.8442 -4.9286 -0.5515 24 7 3.2174 -3.8538 -0.8778 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 1.6350 -4.8193 1.7382 29 1 3.0676 -6.9209 1.9740 30 1 4.7568 -6.5377 1.5642 31 1 5.3628 -8.8807 1.1454 32 1 3.7289 -9.3595 1.6643 33 1 4.9778 -9.9517 -1.0573 34 1 4.7716 -11.1230 0.2672 35 1 2.3163 -10.7898 0.1799 36 1 2.9443 -11.3291 -1.3961 37 1 1.3391 -9.4592 -1.6701 38 1 2.9733 -8.9801 -2.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000594655983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:08 Heat of formation + Delta-G solvation = -22.119661 kcal Electronic energy + Delta-G solvation = -23214.866349 eV Core-core repulsion = 19536.581960 eV Total energy + Delta-G solvation = -3678.284390 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -49.07739 -46.99834 -42.38262 -38.36929 -34.92461 -33.22847 -31.59277 -30.92215 -30.30251 -27.46825 -26.42989 -23.37734 -23.24638 -22.62994 -21.02011 -20.45445 -19.82740 -17.44371 -16.98484 -16.88283 -16.59451 -16.08893 -15.68152 -14.81919 -14.48098 -14.30418 -14.27699 -13.90506 -13.66518 -13.49656 -13.31219 -12.94706 -12.78161 -12.45825 -12.32904 -12.06507 -11.95185 -11.60311 -11.51565 -11.18615 -11.13437 -10.89200 -10.65500 -10.60711 -10.48629 -9.99895 -9.61479 -9.35043 -9.17782 -8.36019 -8.01671 -5.92781 -3.93171 2.32852 2.81038 3.42305 3.44967 3.47836 3.48814 3.62846 3.74094 3.92303 4.02350 4.40761 4.53207 4.56252 4.63550 4.69408 4.72558 4.90713 4.95457 5.09869 5.22949 5.24786 5.33074 5.43956 5.49380 5.52646 5.57645 5.61870 5.67088 5.87745 5.97256 6.20499 6.41450 7.23555 7.28181 7.61917 7.71404 8.04859 8.44705 9.10012 9.41737 9.69109 11.18354 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.003755 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.074807 B = 7454.647665 C = 7697.447944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.899 5.899 2 C 0.056 3.944 3 Si 0.896 3.104 4 H -0.276 1.276 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.502 4.502 8 H 0.058 0.942 9 C 0.093 3.907 10 C 0.036 3.964 11 C -0.074 4.074 12 N -0.303 5.303 13 C 0.123 3.877 14 C -0.139 4.139 15 H 0.117 0.883 16 C -0.113 4.113 17 C -0.123 4.123 18 C -0.120 4.120 19 C -0.158 4.158 20 C 0.291 3.709 21 F -0.200 7.200 22 F -0.187 7.187 23 N -0.108 5.108 24 N -0.258 5.258 25 H 0.261 0.739 26 H 0.038 0.962 27 H 0.035 0.965 28 H 0.177 0.823 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.082 0.918 32 H 0.077 0.923 33 H 0.070 0.930 34 H 0.074 0.926 35 H 0.073 0.927 36 H 0.077 0.923 37 H 0.088 0.912 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.011 -24.683 2.977 25.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.144 4.144 3 Si 0.724 3.276 4 H -0.201 1.201 5 H -0.214 1.214 6 H -0.204 1.204 7 C -0.541 4.541 8 H 0.076 0.924 9 C 0.054 3.946 10 C -0.101 4.101 11 C -0.223 4.223 12 N -0.098 5.098 13 C 0.000 4.000 14 C -0.159 4.159 15 H 0.135 0.865 16 C -0.151 4.151 17 C -0.160 4.160 18 C -0.157 4.157 19 C -0.196 4.196 20 C 0.254 3.746 21 F -0.181 7.181 22 F -0.167 7.167 23 N -0.086 5.086 24 N -0.126 5.126 25 H 0.071 0.929 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.195 0.805 29 H 0.124 0.876 30 H 0.121 0.879 31 H 0.101 0.899 32 H 0.095 0.905 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.092 0.908 36 H 0.095 0.905 37 H 0.106 0.894 38 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 7.924 -24.679 1.933 25.992 hybrid contribution -0.584 1.022 0.997 1.543 sum 7.340 -23.656 2.930 24.941 Atomic orbital electron populations 1.69943 1.05962 1.26781 1.51190 1.24973 0.94864 0.99169 0.95429 0.86581 0.79480 0.82824 0.78682 1.20121 1.21356 1.20376 1.21020 0.93198 0.89830 1.50046 0.92365 1.17702 0.90911 0.87561 0.98430 1.22924 0.97838 0.97711 0.91637 1.23270 0.97366 0.95844 1.05778 1.46974 1.22795 1.19099 1.20963 1.21885 1.03207 0.80236 0.94638 1.22550 0.95262 0.96535 1.01558 0.86474 1.21544 1.02115 0.92558 0.98859 1.21594 0.96850 0.98343 0.99227 1.21536 0.96542 0.96469 1.01166 1.22536 1.04526 0.94303 0.98269 1.21005 0.87517 0.83720 0.82332 1.92969 1.76772 1.92124 1.56199 1.93140 1.88024 1.52021 1.83554 1.78076 1.21762 1.07196 1.01611 1.75023 1.06955 1.07247 1.23358 0.92919 0.94375 0.94665 0.80544 0.87640 0.87916 0.89909 0.90453 0.91145 0.90719 0.90838 0.90458 0.89377 0.88665 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.31 13.29 55.43 0.74 -26.57 16 2 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 3 Si 0.90 22.55 29.54 -169.99 -5.02 17.53 16 4 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 5 H -0.29 -7.08 7.11 56.52 0.40 -6.67 16 6 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 7 C -0.50 -14.91 9.09 -34.44 -0.31 -15.23 16 8 H 0.06 1.76 7.74 -52.49 -0.41 1.35 16 9 C 0.09 2.53 5.55 -29.04 -0.16 2.37 16 10 C 0.04 0.86 6.44 -82.78 -0.53 0.33 16 11 C -0.07 -1.45 10.97 -17.05 -0.19 -1.64 16 12 N -0.30 -5.22 2.04 -61.26 -0.12 -5.35 16 13 C 0.12 1.38 5.78 -4.04 -0.02 1.36 16 14 C -0.14 -1.35 1.96 -90.62 -0.18 -1.53 16 15 H 0.12 1.25 8.00 -51.93 -0.42 0.83 16 16 C -0.11 -0.70 5.08 -26.73 -0.14 -0.84 16 17 C -0.12 -0.66 5.92 -26.73 -0.16 -0.82 16 18 C -0.12 -0.74 5.80 -26.73 -0.16 -0.90 16 19 C -0.16 -1.38 5.46 -26.71 -0.15 -1.53 16 20 C 0.29 3.39 1.63 -26.71 -0.04 3.35 16 21 F -0.20 -2.42 15.42 2.25 0.03 -2.38 16 22 F -0.19 -3.12 14.78 2.25 0.03 -3.09 16 23 N -0.11 -2.23 12.62 60.35 0.76 -1.47 16 24 N -0.26 -6.38 12.40 33.29 0.41 -5.96 16 25 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 26 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 27 H 0.04 0.95 8.12 -51.93 -0.42 0.53 16 28 H 0.18 2.88 8.06 -52.49 -0.42 2.46 16 29 H 0.11 1.01 7.59 -51.93 -0.39 0.62 16 30 H 0.10 0.94 8.14 -51.93 -0.42 0.51 16 31 H 0.08 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.08 0.46 7.80 -51.93 -0.41 0.06 16 33 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.48 7.80 -51.93 -0.41 0.07 16 36 H 0.08 0.38 8.14 -51.93 -0.42 -0.04 16 37 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 LS Contribution 319.12 15.07 4.81 4.81 Total: -1.00 -35.00 319.12 -5.88 -40.88 By element: Atomic # 1 Polarization: 0.51 SS G_CDS: -5.39 Total: -4.88 kcal Atomic # 6 Polarization: -11.38 SS G_CDS: -2.13 Total: -13.51 kcal Atomic # 7 Polarization: -41.14 SS G_CDS: 1.79 Total: -39.36 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.07 Total: -5.47 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.53 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -35.00 -5.88 -40.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.759 kcal (2) G-P(sol) polarization free energy of solvation -35.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.242 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.879 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.120 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds