Wall clock time and date at job start Tue Mar 31 2020 05:36:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31513 * 1 3 3 Si 1.86802 * 119.99671 * 2 1 4 4 H 1.48505 * 109.47050 * 239.99660 * 3 2 1 5 5 H 1.48494 * 109.47253 * 359.97438 * 3 2 1 6 6 H 1.48501 * 109.47064 * 120.00083 * 3 2 1 7 7 C 1.37876 * 120.00096 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99757 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00021 * 0.02562 * 7 2 1 10 10 C 1.50699 * 109.47277 * 179.97438 * 9 7 2 11 11 C 1.35349 * 126.74891 * 124.99619 * 10 9 7 12 12 N 1.35312 * 106.17395 * 179.97438 * 11 10 9 13 13 C 1.46502 * 125.87232 * 180.02562 * 12 11 10 14 14 C 1.53001 * 109.47203 * 124.99838 * 13 12 11 15 15 H 1.09001 * 109.46652 * 55.00507 * 14 13 12 16 16 C 1.53000 * 109.46886 * 175.00162 * 14 13 12 17 17 C 1.52997 * 109.47060 * 180.02562 * 16 14 13 18 18 C 1.53006 * 109.47127 * 300.00449 * 17 16 14 19 19 C 1.52997 * 109.47164 * 59.99836 * 18 17 16 20 20 C 1.52996 * 109.47302 * 295.00379 * 14 13 12 21 21 F 1.39891 * 109.47275 * 299.99764 * 20 14 13 22 22 F 1.39902 * 109.46876 * 60.00222 * 20 14 13 23 23 N 1.28721 * 108.26242 * 0.26693 * 12 11 10 24 24 N 1.28631 * 110.17627 * 359.55645 * 23 12 11 25 25 H 0.97007 * 120.00368 * 0.02562 * 1 2 3 26 26 H 1.09001 * 109.47062 * 59.99867 * 9 7 2 27 27 H 1.09002 * 109.47414 * 300.00308 * 9 7 2 28 28 H 1.07997 * 126.91390 * 359.96628 * 11 10 9 29 29 H 1.09002 * 109.46745 * 5.00182 * 13 12 11 30 30 H 1.08994 * 109.47346 * 245.00738 * 13 12 11 31 31 H 1.09002 * 109.47398 * 300.00496 * 16 14 13 32 32 H 1.09001 * 109.47194 * 60.00677 * 16 14 13 33 33 H 1.08998 * 109.47533 * 59.99948 * 17 16 14 34 34 H 1.08996 * 109.47853 * 180.02562 * 17 16 14 35 35 H 1.09001 * 109.47002 * 299.99574 * 18 17 16 36 36 H 1.09000 * 109.47050 * 179.97438 * 18 17 16 37 37 H 1.09002 * 109.47045 * 180.02562 * 19 18 17 38 38 H 1.09001 * 109.47375 * 59.99966 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1029 1.6965 -1.2125 5 1 1.2840 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0045 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 6 2.2304 -3.6446 0.0005 11 6 2.2838 -4.6643 0.8889 12 7 3.3140 -5.4502 0.4991 13 6 3.7539 -6.6804 1.1620 14 6 3.7686 -7.8278 0.1500 15 1 4.3854 -7.5504 -0.7049 16 6 4.3456 -9.0820 0.8095 17 6 4.3609 -10.2293 -0.2026 18 6 2.9333 -10.5121 -0.6747 19 6 2.3564 -9.2578 -1.3342 20 6 2.3408 -8.1104 -0.3215 21 9 1.5493 -8.4665 0.7756 22 9 1.8133 -6.9635 -0.9246 23 7 3.8442 -4.9286 -0.5515 24 7 3.2174 -3.8538 -0.8778 25 1 -0.4851 0.8401 -0.0004 26 1 0.6247 -2.5570 -0.8897 27 1 0.6240 -2.5567 0.8903 28 1 1.6350 -4.8193 1.7382 29 1 3.0676 -6.9209 1.9740 30 1 4.7568 -6.5377 1.5642 31 1 5.3628 -8.8807 1.1454 32 1 3.7289 -9.3595 1.6643 33 1 4.9778 -9.9517 -1.0573 34 1 4.7716 -11.1230 0.2672 35 1 2.3163 -10.7898 0.1799 36 1 2.9443 -11.3291 -1.3961 37 1 1.3391 -9.4592 -1.6701 38 1 2.9733 -8.9801 -2.1888 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000594655983.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:36:07 Heat of formation + Delta-G solvation = -43.821996 kcal Electronic energy + Delta-G solvation = -23215.807433 eV Core-core repulsion = 19536.581960 eV Total energy + Delta-G solvation = -3679.225474 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -50.07405 -48.04184 -43.98568 -39.04406 -36.23066 -35.21241 -32.96012 -32.50176 -31.00520 -29.38767 -27.51080 -25.46109 -23.92184 -23.60510 -22.54361 -21.48663 -20.96960 -18.55312 -18.37466 -18.09653 -17.77632 -17.57032 -16.92986 -16.53662 -15.64530 -15.57582 -15.14788 -14.94811 -14.68136 -14.50982 -14.35857 -14.32985 -14.03462 -13.76022 -13.59047 -13.45573 -13.08347 -12.84061 -12.67583 -12.57237 -12.49613 -12.18331 -11.88157 -11.71299 -11.67787 -11.59303 -11.38133 -11.22465 -10.69905 -10.57614 -9.81789 -8.18353 -6.27862 0.79260 1.39850 1.44269 1.51716 1.56165 1.81109 2.44731 2.66175 2.96715 3.08196 3.13899 3.30096 3.63065 3.69825 3.85377 3.98476 4.04173 4.13286 4.23119 4.27565 4.33074 4.36531 4.49394 4.63415 4.68308 4.80938 4.93315 5.01759 5.04909 5.19348 5.21758 5.29153 5.42317 5.46453 5.53188 5.76288 5.84995 6.22085 6.80235 7.38702 7.74491 8.92683 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.041162 B = 0.003755 C = 0.003637 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.074807 B = 7454.647665 C = 7697.447944 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.929 5.929 2 C 0.007 3.993 3 Si 0.965 3.035 4 H -0.275 1.275 5 H -0.275 1.275 6 H -0.267 1.267 7 C -0.524 4.524 8 H 0.046 0.954 9 C 0.103 3.897 10 C -0.004 4.004 11 C -0.054 4.054 12 N -0.280 5.280 13 C 0.105 3.895 14 C -0.131 4.131 15 H 0.107 0.893 16 C -0.106 4.106 17 C -0.121 4.121 18 C -0.115 4.115 19 C -0.157 4.157 20 C 0.274 3.726 21 F -0.203 7.203 22 F -0.223 7.223 23 N -0.107 5.107 24 N -0.307 5.307 25 H 0.266 0.734 26 H 0.004 0.996 27 H 0.029 0.971 28 H 0.211 0.789 29 H 0.129 0.871 30 H 0.135 0.865 31 H 0.104 0.896 32 H 0.085 0.915 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.072 0.928 36 H 0.093 0.907 37 H 0.082 0.918 38 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.757 -26.455 4.491 28.226 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.569 5.569 2 C -0.192 4.192 3 Si 0.790 3.210 4 H -0.200 1.200 5 H -0.200 1.200 6 H -0.192 1.192 7 C -0.562 4.562 8 H 0.065 0.935 9 C 0.064 3.936 10 C -0.142 4.142 11 C -0.204 4.204 12 N -0.076 5.076 13 C -0.015 4.015 14 C -0.151 4.151 15 H 0.125 0.875 16 C -0.144 4.144 17 C -0.159 4.159 18 C -0.153 4.153 19 C -0.195 4.195 20 C 0.238 3.762 21 F -0.184 7.184 22 F -0.204 7.204 23 N -0.086 5.086 24 N -0.173 5.173 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.047 0.953 28 H 0.227 0.773 29 H 0.147 0.853 30 H 0.152 0.848 31 H 0.123 0.877 32 H 0.103 0.897 33 H 0.090 0.910 34 H 0.114 0.886 35 H 0.091 0.909 36 H 0.111 0.889 37 H 0.100 0.900 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges 9.692 -26.493 3.450 28.420 hybrid contribution -1.143 1.413 0.557 1.901 sum 8.550 -25.080 4.007 26.799 Atomic orbital electron populations 1.70051 1.07400 1.28012 1.51436 1.25848 0.95818 1.02848 0.94637 0.85504 0.78332 0.78284 0.78917 1.20005 1.20038 1.19195 1.21250 0.92824 0.91422 1.50750 0.93534 1.17353 0.91143 0.88668 0.96405 1.22532 0.98690 0.98883 0.94120 1.23538 0.97401 0.94294 1.05141 1.47377 1.21066 1.19702 1.19435 1.22593 1.05466 0.78095 0.95332 1.22566 0.93814 0.97659 1.01036 0.87496 1.21602 1.03119 0.90745 0.98919 1.21627 0.96158 0.98840 0.99250 1.21563 0.97023 0.95335 1.01347 1.22580 1.04591 0.94529 0.97822 1.21607 0.88204 0.83437 0.82920 1.92953 1.77061 1.92038 1.56326 1.93074 1.88718 1.54269 1.84319 1.77921 1.21572 1.06371 1.02711 1.74928 1.08125 1.09314 1.24967 0.92478 0.97829 0.95253 0.77273 0.85329 0.84755 0.87724 0.89685 0.90981 0.88551 0.90897 0.88852 0.89974 0.88619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.51 13.29 21.45 0.28 -57.22 16 2 C 0.01 0.39 5.46 84.65 0.46 0.85 16 3 Si 0.97 46.66 29.54 68.60 2.03 48.68 16 4 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 6 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 7 C -0.52 -32.13 9.09 25.60 0.23 -31.90 16 8 H 0.05 2.89 7.74 -2.91 -0.02 2.87 16 9 C 0.10 5.91 5.55 29.10 0.16 6.07 16 10 C 0.00 -0.22 6.44 41.60 0.27 0.05 16 11 C -0.05 -2.07 10.97 83.49 0.92 -1.15 16 12 N -0.28 -9.33 2.04 -347.74 -0.71 -10.04 16 13 C 0.10 2.05 5.78 86.38 0.50 2.55 16 14 C -0.13 -2.24 1.96 -10.79 -0.02 -2.26 16 15 H 0.11 2.10 8.00 -2.39 -0.02 2.08 16 16 C -0.11 -0.91 5.08 30.59 0.16 -0.75 16 17 C -0.12 -0.87 5.92 30.60 0.18 -0.69 16 18 C -0.12 -1.13 5.80 30.60 0.18 -0.95 16 19 C -0.16 -2.58 5.46 30.61 0.17 -2.41 16 20 C 0.27 6.10 1.63 30.61 0.05 6.15 16 21 F -0.20 -4.58 15.42 44.97 0.69 -3.89 16 22 F -0.22 -7.55 14.78 44.97 0.66 -6.89 16 23 N -0.11 -4.43 12.62 37.02 0.47 -3.96 16 24 N -0.31 -15.60 12.40 -48.60 -0.60 -16.20 16 25 H 0.27 15.42 8.31 -92.70 -0.77 14.65 16 26 H 0.00 0.22 8.14 -2.39 -0.02 0.21 16 27 H 0.03 1.66 8.12 -2.39 -0.02 1.64 16 28 H 0.21 6.45 8.06 -2.91 -0.02 6.43 16 29 H 0.13 1.99 7.59 -2.39 -0.02 1.97 16 30 H 0.13 1.89 8.14 -2.39 -0.02 1.87 16 31 H 0.10 0.51 8.14 -2.39 -0.02 0.49 16 32 H 0.08 0.66 7.80 -2.39 -0.02 0.64 16 33 H 0.07 0.53 8.14 -2.39 -0.02 0.51 16 34 H 0.10 0.35 8.14 -2.39 -0.02 0.33 16 35 H 0.07 0.75 7.80 -2.39 -0.02 0.73 16 36 H 0.09 0.64 8.14 -2.39 -0.02 0.62 16 37 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 38 H 0.10 1.53 8.14 -2.39 -0.02 1.51 16 Total: -1.00 -79.24 319.12 7.13 -72.11 By element: Atomic # 1 Polarization: 0.81 SS G_CDS: 1.05 Total: 1.87 kcal Atomic # 6 Polarization: -27.70 SS G_CDS: 3.25 Total: -24.45 kcal Atomic # 7 Polarization: -86.87 SS G_CDS: -0.56 Total: -87.43 kcal Atomic # 9 Polarization: -12.14 SS G_CDS: 1.36 Total: -10.78 kcal Atomic # 14 Polarization: 46.66 SS G_CDS: 2.03 Total: 48.68 kcal Total: -79.24 7.13 -72.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000594655983.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.289 kcal (2) G-P(sol) polarization free energy of solvation -79.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 7.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.111 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds