Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47157 * 269.99844 * 3 2 1 5 5 H 1.48500 * 109.47032 * 30.00210 * 3 2 1 6 6 H 1.48510 * 109.46914 * 149.99931 * 3 2 1 7 7 C 1.37876 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99762 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00117 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.49997 * 60.08158 * 9 7 2 11 11 C 1.53119 * 109.50339 * 300.00137 * 9 7 2 12 12 C 1.53124 * 109.15841 * 182.40666 * 11 9 7 13 13 C 1.53032 * 109.28012 * 57.65244 * 12 11 9 14 14 N 1.46846 * 109.52260 * 300.82015 * 13 12 11 15 15 C 1.46902 * 111.00204 * 185.84105 * 14 13 12 16 16 C 1.50705 * 109.47245 * 66.04321 * 15 14 13 17 17 N 1.30499 * 125.64842 * 90.02433 * 16 15 14 18 18 C 1.34126 * 109.25636 * 180.02562 * 17 16 15 19 19 C 1.34667 * 108.02284 * 359.97438 * 18 17 16 20 20 N 1.35037 * 125.65159 * 269.72695 * 16 15 14 21 21 C 1.46499 * 126.40008 * 359.97438 * 20 16 15 22 22 F 1.39898 * 109.47558 * 210.00270 * 21 20 16 23 23 F 1.39905 * 109.46978 * 330.00687 * 21 20 16 24 24 C 1.46846 * 111.19997 * 61.74591 * 14 13 12 25 25 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.52394 * 62.49954 * 11 9 7 27 27 H 1.09003 * 109.56984 * 302.33898 * 11 9 7 28 28 H 1.08999 * 109.49853 * 297.70868 * 12 11 9 29 29 H 1.08996 * 109.49839 * 177.59898 * 12 11 9 30 30 H 1.09001 * 109.46314 * 180.80749 * 13 12 11 31 31 H 1.08997 * 109.46418 * 60.83870 * 13 12 11 32 32 H 1.09001 * 109.47344 * 186.04531 * 15 14 13 33 33 H 1.09004 * 109.47104 * 306.04740 * 15 14 13 34 34 H 1.08001 * 125.98892 * 179.97438 * 18 17 16 35 35 H 1.07992 * 126.59597 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47245 * 89.99967 * 21 20 16 37 37 H 1.08996 * 109.46231 * 58.27402 * 24 14 13 38 38 H 1.09004 * 109.46418 * 178.24241 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8757 -0.6817 0.8894 11 6 4.0223 -0.4720 -1.2511 12 6 5.5522 -0.5290 -1.2745 13 6 6.0040 -1.9908 -1.2430 14 7 5.4908 -2.6370 -0.0284 15 6 6.0188 -4.0013 0.1054 16 6 7.5077 -3.9438 0.3316 17 7 8.0984 -3.8747 1.4932 18 6 9.4269 -3.8394 1.3125 19 6 9.6687 -3.8890 -0.0114 20 7 8.4517 -3.9609 -0.6338 21 6 8.2171 -4.0386 -2.0778 22 9 9.2901 -4.6951 -2.6900 23 9 7.0361 -4.7482 -2.3209 24 6 4.0225 -2.6366 -0.0066 25 1 -0.4850 0.8400 -0.0004 26 1 3.6967 0.5680 -1.2296 27 1 3.6259 -0.9595 -2.1419 28 1 5.9491 -0.0066 -0.4040 29 1 5.9202 -0.0538 -2.1838 30 1 7.0931 -2.0345 -1.2451 31 1 5.6183 -2.5091 -2.1209 32 1 5.5414 -4.4943 0.9523 33 1 5.8112 -4.5622 -0.8059 34 1 10.1721 -3.7813 2.0920 35 1 10.6368 -3.8787 -0.4898 36 1 8.1265 -3.0319 -2.4859 37 1 3.6460 -3.1519 -0.8902 38 1 3.6724 -3.1493 0.8894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -14.736601 kcal Electronic energy + Delta-G solvation = -23522.486415 eV Core-core repulsion = 19844.522179 eV Total energy + Delta-G solvation = -3677.964236 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -49.80377 -47.91572 -42.25222 -38.52150 -34.21000 -33.70103 -32.26171 -30.45161 -29.95380 -26.96503 -25.76453 -25.02165 -22.66144 -21.81074 -21.46729 -20.47755 -19.07834 -18.56362 -18.23540 -17.60218 -16.76262 -15.94952 -15.39447 -15.00361 -14.81361 -14.61450 -14.39117 -14.29983 -14.02203 -13.82199 -13.58988 -13.49521 -13.12462 -12.75312 -12.63072 -12.23075 -12.17195 -11.55777 -11.20803 -11.09192 -10.59752 -10.25666 -10.14077 -10.10880 -10.00131 -9.74734 -9.20241 -8.97159 -8.65796 -8.52411 -7.95372 -6.07476 -4.06841 1.59225 1.82412 2.95282 3.10834 3.27152 3.39849 3.42875 3.67544 3.98495 4.14285 4.38139 4.41947 4.44303 5.10308 5.15714 5.22185 5.25383 5.34521 5.56307 5.58664 5.67095 5.83465 5.89885 6.04544 6.16737 6.20683 6.35400 6.44868 6.53473 6.68742 6.72490 6.77201 7.14161 7.28120 7.40749 7.61786 7.81672 7.90673 8.50710 8.95619 9.55161 11.05723 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.004597 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.088629 B = 6089.269586 C = 6253.901244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.072 3.928 3 Si 0.886 3.114 4 H -0.281 1.281 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.514 4.514 8 H 0.074 0.926 9 C 0.021 3.979 10 H 0.038 0.962 11 C -0.123 4.123 12 C -0.118 4.118 13 C 0.056 3.944 14 N -0.531 5.531 15 C 0.119 3.881 16 C 0.253 3.747 17 N -0.465 5.465 18 C -0.014 4.014 19 C -0.054 4.054 20 N -0.518 5.518 21 C 0.481 3.519 22 F -0.181 7.181 23 F -0.173 7.173 24 C 0.079 3.921 25 H 0.264 0.736 26 H 0.048 0.952 27 H 0.057 0.943 28 H 0.065 0.935 29 H 0.054 0.946 30 H 0.048 0.952 31 H 0.033 0.967 32 H 0.109 0.891 33 H 0.065 0.935 34 H 0.176 0.824 35 H 0.180 0.820 36 H 0.153 0.847 37 H 0.031 0.969 38 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.818 -7.241 -5.183 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.552 4.552 8 H 0.092 0.908 9 C 0.001 3.999 10 H 0.056 0.944 11 C -0.160 4.160 12 C -0.156 4.156 13 C -0.072 4.072 14 N -0.257 5.257 15 C -0.010 4.010 16 C -0.009 4.009 17 N -0.182 5.182 18 C -0.160 4.160 19 C -0.183 4.183 20 N -0.215 5.215 21 C 0.345 3.655 22 F -0.163 7.163 23 F -0.154 7.154 24 C -0.047 4.047 25 H 0.073 0.927 26 H 0.066 0.934 27 H 0.076 0.924 28 H 0.084 0.916 29 H 0.073 0.927 30 H 0.066 0.934 31 H 0.051 0.949 32 H 0.127 0.873 33 H 0.082 0.918 34 H 0.193 0.807 35 H 0.197 0.803 36 H 0.169 0.831 37 H 0.049 0.951 38 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 19.404 -6.900 -4.182 21.014 hybrid contribution 0.728 0.370 -1.651 1.841 sum 20.131 -6.530 -5.832 21.953 Atomic orbital electron populations 1.69892 1.06299 1.26954 1.50810 1.24967 0.94645 0.98995 0.94389 0.86849 0.80109 0.83565 0.77781 1.20782 1.22571 1.18781 1.20973 0.88616 0.94552 1.51097 0.90828 1.19170 0.96058 0.90877 0.93771 0.94433 1.22040 0.92217 1.00484 1.01268 1.21638 0.98513 0.94484 1.00967 1.22168 0.97422 0.96589 0.91035 1.61950 1.11053 1.15089 1.37575 1.20775 0.84462 0.92331 1.03453 1.23474 0.93211 1.02165 0.82047 1.70370 1.06265 1.18405 1.23179 1.22437 0.93192 1.06052 0.94295 1.22630 0.88822 1.12512 0.94323 1.46809 1.09145 1.58977 1.06523 1.21638 0.72194 0.92938 0.78711 1.93106 1.56666 1.84176 1.82310 1.93077 1.47285 1.81629 1.93411 1.22137 0.82126 1.00127 1.00319 0.92664 0.93364 0.92401 0.91618 0.92732 0.93372 0.94894 0.87317 0.91769 0.80690 0.80298 0.83053 0.95064 0.90805 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.36 13.96 55.43 0.77 -26.58 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 21.88 24.35 -169.99 -4.14 17.74 16 4 H -0.28 -6.71 6.89 56.52 0.39 -6.33 16 5 H -0.30 -7.42 7.11 56.52 0.40 -7.02 16 6 H -0.26 -6.29 6.53 56.52 0.37 -5.92 16 7 C -0.51 -14.10 9.15 -34.44 -0.31 -14.41 16 8 H 0.07 2.17 7.99 -52.48 -0.42 1.75 16 9 C 0.02 0.47 1.85 -91.69 -0.17 0.30 16 10 H 0.04 0.93 7.21 -51.93 -0.37 0.55 16 11 C -0.12 -2.55 4.73 -26.61 -0.13 -2.68 16 12 C -0.12 -1.99 6.09 -26.65 -0.16 -2.16 16 13 C 0.06 0.84 4.38 -3.84 -0.02 0.82 16 14 N -0.53 -9.00 4.65 -236.11 -1.10 -10.10 16 15 C 0.12 1.74 5.19 -4.97 -0.03 1.72 16 16 C 0.25 3.63 6.46 -155.42 -1.00 2.62 16 17 N -0.46 -7.20 11.25 -10.82 -0.12 -7.32 16 18 C -0.01 -0.16 11.87 -17.81 -0.21 -0.37 16 19 C -0.05 -0.56 11.16 -16.56 -0.18 -0.74 16 20 N -0.52 -6.01 2.74 -119.65 -0.33 -6.34 16 21 C 0.48 4.49 5.12 59.85 0.31 4.80 16 22 F -0.18 -1.65 17.05 2.25 0.04 -1.61 16 23 F -0.17 -1.88 14.31 2.25 0.03 -1.85 16 24 C 0.08 1.54 4.68 -3.83 -0.02 1.52 16 25 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 26 H 0.05 1.08 3.34 -51.93 -0.17 0.90 16 27 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 28 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 29 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.05 0.63 4.76 -51.93 -0.25 0.38 16 31 H 0.03 0.47 8.09 -51.93 -0.42 0.05 16 32 H 0.11 1.58 7.98 -51.93 -0.41 1.16 16 33 H 0.06 0.87 5.54 -51.93 -0.29 0.58 16 34 H 0.18 1.57 8.06 -52.49 -0.42 1.15 16 35 H 0.18 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.15 1.02 6.77 -51.93 -0.35 0.67 16 37 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 38 H 0.07 1.44 8.01 -51.93 -0.42 1.02 16 LS Contribution 301.66 15.07 4.55 4.55 Total: -1.00 -32.01 301.66 -7.14 -39.15 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: -4.82 Total: -1.00 kcal Atomic # 6 Polarization: -4.62 SS G_CDS: -2.02 Total: -6.64 kcal Atomic # 7 Polarization: -49.57 SS G_CDS: -0.77 Total: -50.34 kcal Atomic # 9 Polarization: -3.53 SS G_CDS: 0.07 Total: -3.46 kcal Atomic # 14 Polarization: 21.88 SS G_CDS: -4.14 Total: 17.74 kcal Total LS contribution 4.55 Total: 4.55 kcal Total: -32.01 -7.14 -39.15 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 24.417 kcal (2) G-P(sol) polarization free energy of solvation -32.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -7.597 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.140 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.154 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.737 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds