Wall clock time and date at job start Tue Mar 31 2020 05:34:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86802 * 119.99772 * 2 1 4 4 H 1.48494 * 109.47157 * 269.99844 * 3 2 1 5 5 H 1.48500 * 109.47032 * 30.00210 * 3 2 1 6 6 H 1.48510 * 109.46914 * 149.99931 * 3 2 1 7 7 C 1.37876 * 120.00179 * 180.02562 * 2 1 3 8 8 H 1.08008 * 119.99762 * 359.97438 * 7 2 1 9 9 C 1.50700 * 120.00117 * 179.97438 * 7 2 1 10 10 H 1.09003 * 109.49997 * 60.08158 * 9 7 2 11 11 C 1.53119 * 109.50339 * 300.00137 * 9 7 2 12 12 C 1.53124 * 109.15841 * 182.40666 * 11 9 7 13 13 C 1.53032 * 109.28012 * 57.65244 * 12 11 9 14 14 N 1.46846 * 109.52260 * 300.82015 * 13 12 11 15 15 C 1.46902 * 111.00204 * 185.84105 * 14 13 12 16 16 C 1.50705 * 109.47245 * 66.04321 * 15 14 13 17 17 N 1.30499 * 125.64842 * 90.02433 * 16 15 14 18 18 C 1.34126 * 109.25636 * 180.02562 * 17 16 15 19 19 C 1.34667 * 108.02284 * 359.97438 * 18 17 16 20 20 N 1.35037 * 125.65159 * 269.72695 * 16 15 14 21 21 C 1.46499 * 126.40008 * 359.97438 * 20 16 15 22 22 F 1.39898 * 109.47558 * 210.00270 * 21 20 16 23 23 F 1.39905 * 109.46978 * 330.00687 * 21 20 16 24 24 C 1.46846 * 111.19997 * 61.74591 * 14 13 12 25 25 H 0.96996 * 119.99954 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.52394 * 62.49954 * 11 9 7 27 27 H 1.09003 * 109.56984 * 302.33898 * 11 9 7 28 28 H 1.08999 * 109.49853 * 297.70868 * 12 11 9 29 29 H 1.08996 * 109.49839 * 177.59898 * 12 11 9 30 30 H 1.09001 * 109.46314 * 180.80749 * 13 12 11 31 31 H 1.08997 * 109.46418 * 60.83870 * 13 12 11 32 32 H 1.09001 * 109.47344 * 186.04531 * 15 14 13 33 33 H 1.09004 * 109.47104 * 306.04740 * 15 14 13 34 34 H 1.08001 * 125.98892 * 179.97438 * 18 17 16 35 35 H 1.07992 * 126.59597 * 180.02562 * 19 18 17 36 36 H 1.09005 * 109.47245 * 89.99967 * 21 20 16 37 37 H 1.08996 * 109.46231 * 58.27402 * 24 14 13 38 38 H 1.09004 * 109.46418 * 178.24241 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1940 -0.0011 10 1 3.8757 -0.6817 0.8894 11 6 4.0223 -0.4720 -1.2511 12 6 5.5522 -0.5290 -1.2745 13 6 6.0040 -1.9908 -1.2430 14 7 5.4908 -2.6370 -0.0284 15 6 6.0188 -4.0013 0.1054 16 6 7.5077 -3.9438 0.3316 17 7 8.0984 -3.8747 1.4932 18 6 9.4269 -3.8394 1.3125 19 6 9.6687 -3.8890 -0.0114 20 7 8.4517 -3.9609 -0.6338 21 6 8.2171 -4.0386 -2.0778 22 9 9.2901 -4.6951 -2.6900 23 9 7.0361 -4.7482 -2.3209 24 6 4.0225 -2.6366 -0.0066 25 1 -0.4850 0.8400 -0.0004 26 1 3.6967 0.5680 -1.2296 27 1 3.6259 -0.9595 -2.1419 28 1 5.9491 -0.0066 -0.4040 29 1 5.9202 -0.0538 -2.1838 30 1 7.0931 -2.0345 -1.2451 31 1 5.6183 -2.5091 -2.1209 32 1 5.5414 -4.4943 0.9523 33 1 5.8112 -4.5622 -0.8059 34 1 10.1721 -3.7813 2.0920 35 1 10.6368 -3.8787 -0.4898 36 1 8.1265 -3.0319 -2.4859 37 1 3.6460 -3.1519 -0.8902 38 1 3.6724 -3.1493 0.8894 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611563.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:32 Heat of formation + Delta-G solvation = -36.863703 kcal Electronic energy + Delta-G solvation = -23523.445918 eV Core-core repulsion = 19844.522179 eV Total energy + Delta-G solvation = -3678.923739 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.52384 -48.63616 -43.15868 -39.95080 -35.83713 -34.60237 -34.08380 -32.06853 -31.08614 -27.93863 -27.00785 -26.61139 -24.05769 -23.16770 -22.50132 -21.46534 -20.58913 -19.40272 -19.11027 -18.77176 -18.36075 -17.29768 -16.57966 -16.14695 -16.06049 -15.60078 -15.38625 -15.35874 -15.19241 -14.97185 -14.87427 -14.72453 -14.53105 -14.21678 -13.78218 -13.61058 -13.41517 -12.94583 -12.74229 -12.70502 -12.29335 -11.92821 -11.78480 -11.45060 -11.19716 -11.05478 -11.01651 -10.85976 -10.61585 -9.57462 -9.23343 -8.28734 -6.31977 0.71391 1.03448 1.29837 1.38071 1.48380 2.01182 2.34020 2.43858 2.92473 2.96883 3.07395 3.29161 3.38648 3.61802 3.90396 4.00200 4.21751 4.25866 4.37046 4.39964 4.53616 4.55717 4.67213 4.71956 4.74968 4.91430 4.96316 5.02058 5.11036 5.20248 5.43794 5.61933 5.66502 5.72409 5.76761 6.07932 6.10911 6.34096 6.75303 6.99111 7.33755 8.88076 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.027935 B = 0.004597 C = 0.004476 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1002.088629 B = 6089.269586 C = 6253.901244 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.950 5.950 2 C 0.015 3.985 3 Si 0.949 3.051 4 H -0.263 1.263 5 H -0.302 1.302 6 H -0.252 1.252 7 C -0.517 4.517 8 H 0.036 0.964 9 C 0.020 3.980 10 H 0.021 0.979 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.056 3.944 14 N -0.543 5.543 15 C 0.125 3.875 16 C 0.231 3.769 17 N -0.504 5.504 18 C -0.038 4.038 19 C -0.032 4.032 20 N -0.518 5.518 21 C 0.478 3.522 22 F -0.178 7.178 23 F -0.184 7.184 24 C 0.091 3.909 25 H 0.265 0.735 26 H 0.035 0.965 27 H 0.056 0.944 28 H 0.056 0.944 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.047 0.953 32 H 0.098 0.902 33 H 0.077 0.923 34 H 0.197 0.803 35 H 0.218 0.782 36 H 0.187 0.813 37 H 0.030 0.970 38 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 23.363 -6.699 -6.740 25.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.591 5.591 2 C -0.182 4.182 3 Si 0.777 3.223 4 H -0.189 1.189 5 H -0.230 1.230 6 H -0.176 1.176 7 C -0.555 4.555 8 H 0.054 0.946 9 C 0.001 3.999 10 H 0.039 0.961 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.071 4.071 14 N -0.268 5.268 15 C -0.004 4.004 16 C -0.032 4.032 17 N -0.222 5.222 18 C -0.184 4.184 19 C -0.161 4.161 20 N -0.214 5.214 21 C 0.343 3.657 22 F -0.159 7.159 23 F -0.165 7.165 24 C -0.036 4.036 25 H 0.074 0.926 26 H 0.053 0.947 27 H 0.075 0.925 28 H 0.075 0.925 29 H 0.109 0.891 30 H 0.093 0.907 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.094 0.906 34 H 0.214 0.786 35 H 0.235 0.765 36 H 0.203 0.797 37 H 0.048 0.952 38 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 22.976 -6.379 -5.761 24.531 hybrid contribution -0.337 0.072 -1.138 1.189 sum 22.640 -6.308 -6.898 24.494 Atomic orbital electron populations 1.70041 1.08159 1.27952 1.52911 1.25801 0.95332 1.02826 0.94260 0.85830 0.78955 0.78845 0.78682 1.18940 1.22981 1.17589 1.21308 0.91304 0.93069 1.49847 0.94584 1.19069 0.93008 0.93426 0.94431 0.96128 1.21917 0.95542 0.98985 0.99504 1.21609 0.94997 0.96011 1.02416 1.22241 0.98969 0.95303 0.90622 1.61833 1.08900 1.16951 1.39119 1.20660 0.85177 0.90930 1.03620 1.23107 0.93042 1.04327 0.82685 1.70287 1.08292 1.19153 1.24509 1.22919 0.92382 1.07043 0.96022 1.23245 0.89617 1.09364 0.93828 1.46958 1.09000 1.58150 1.07257 1.22145 0.71781 0.94164 0.77585 1.93117 1.56488 1.84337 1.82007 1.93054 1.48046 1.82079 1.93335 1.21793 0.84407 0.97586 0.99795 0.92600 0.94689 0.92498 0.92470 0.89137 0.90653 0.93517 0.88352 0.90570 0.78628 0.76539 0.79691 0.95206 0.91961 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.59 13.96 21.45 0.30 -59.29 16 2 C 0.01 0.86 5.45 84.65 0.46 1.32 16 3 Si 0.95 45.45 24.35 68.60 1.67 47.12 16 4 H -0.26 -11.80 6.89 99.48 0.69 -11.12 16 5 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 6 H -0.25 -11.46 6.53 99.48 0.65 -10.81 16 7 C -0.52 -29.31 9.15 25.60 0.23 -29.08 16 8 H 0.04 2.24 7.99 -2.91 -0.02 2.22 16 9 C 0.02 0.92 1.85 -11.49 -0.02 0.90 16 10 H 0.02 1.02 7.21 -2.39 -0.02 1.00 16 11 C -0.12 -4.87 4.73 30.68 0.15 -4.73 16 12 C -0.11 -3.41 6.09 30.65 0.19 -3.22 16 13 C 0.06 1.50 4.38 86.32 0.38 1.88 16 14 N -0.54 -17.63 4.65 -900.92 -4.19 -21.82 16 15 C 0.13 3.52 5.19 85.56 0.44 3.97 16 16 C 0.23 6.16 6.46 138.13 0.89 7.05 16 17 N -0.50 -14.94 11.25 -188.13 -2.12 -17.06 16 18 C -0.04 -0.82 11.87 83.52 0.99 0.17 16 19 C -0.03 -0.53 11.16 83.08 0.93 0.40 16 20 N -0.52 -10.26 2.74 -532.45 -1.46 -11.71 16 21 C 0.48 7.02 5.12 127.77 0.65 7.67 16 22 F -0.18 -2.53 17.05 44.97 0.77 -1.77 16 23 F -0.18 -3.46 14.31 44.97 0.64 -2.82 16 24 C 0.09 3.58 4.68 86.33 0.40 3.98 16 25 H 0.27 15.61 8.31 -92.71 -0.77 14.84 16 26 H 0.03 1.48 3.34 -2.39 -0.01 1.48 16 27 H 0.06 2.26 8.14 -2.39 -0.02 2.24 16 28 H 0.06 1.85 8.14 -2.39 -0.02 1.83 16 29 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 30 H 0.08 1.63 4.76 -2.39 -0.01 1.62 16 31 H 0.05 1.15 8.09 -2.39 -0.02 1.13 16 32 H 0.10 2.90 7.98 -2.39 -0.02 2.88 16 33 H 0.08 1.94 5.54 -2.39 -0.01 1.93 16 34 H 0.20 3.05 8.06 -2.91 -0.02 3.02 16 35 H 0.22 1.83 8.06 -2.91 -0.02 1.81 16 36 H 0.19 1.51 6.77 -2.38 -0.02 1.50 16 37 H 0.03 1.16 8.14 -2.39 -0.02 1.14 16 38 H 0.06 2.52 8.01 -2.38 -0.02 2.50 16 Total: -1.00 -71.87 301.66 2.32 -69.55 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: 1.00 Total: 7.49 kcal Atomic # 6 Polarization: -15.39 SS G_CDS: 5.70 Total: -9.69 kcal Atomic # 7 Polarization: -102.42 SS G_CDS: -7.46 Total: -109.89 kcal Atomic # 9 Polarization: -5.99 SS G_CDS: 1.41 Total: -4.58 kcal Atomic # 14 Polarization: 45.45 SS G_CDS: 1.67 Total: 47.12 kcal Total: -71.87 2.32 -69.55 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611563.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 32.688 kcal (2) G-P(sol) polarization free energy of solvation -71.870 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.182 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.864 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds