Wall clock time and date at job start Tue Mar 31 2020 05:34:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00157 * 2 1 4 4 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47209 * 239.99683 * 3 2 1 6 6 H 1.48501 * 109.47471 * 119.99772 * 3 2 1 7 7 C 1.37886 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00441 * 14.83102 * 7 2 1 9 9 C 1.50706 * 119.99476 * 194.83142 * 7 2 1 10 10 H 1.08994 * 109.50017 * 306.09571 * 9 7 2 11 11 C 1.53112 * 109.50346 * 66.17602 * 9 7 2 12 12 C 1.53124 * 109.16116 * 177.59055 * 11 9 7 13 13 C 1.53034 * 109.27792 * 302.35034 * 12 11 9 14 14 N 1.46845 * 109.52887 * 59.17585 * 13 12 11 15 15 C 1.46894 * 111.00528 * 174.16097 * 14 13 12 16 16 C 1.50699 * 109.47129 * 73.71077 * 15 14 13 17 17 N 1.30492 * 125.65424 * 284.91445 * 16 15 14 18 18 C 1.34129 * 109.25923 * 179.89403 * 17 16 15 19 19 C 1.34662 * 108.02051 * 0.36905 * 18 17 16 20 20 N 1.35053 * 125.64918 * 105.22293 * 16 15 14 21 21 C 1.46498 * 126.39428 * 359.94275 * 20 16 15 22 22 F 1.39908 * 109.47179 * 291.41556 * 21 20 16 23 23 F 1.39898 * 109.47433 * 51.41450 * 21 20 16 24 24 C 1.46854 * 111.19619 * 298.26211 * 14 13 12 25 25 H 0.97003 * 119.99903 * 174.88164 * 1 2 3 26 26 H 1.08996 * 109.52789 * 297.49766 * 11 9 7 27 27 H 1.09007 * 109.52198 * 57.62723 * 11 9 7 28 28 H 1.08997 * 109.50013 * 62.28875 * 12 11 9 29 29 H 1.08989 * 109.50611 * 182.36640 * 12 11 9 30 30 H 1.09001 * 109.46332 * 179.19121 * 13 12 11 31 31 H 1.09003 * 109.46531 * 299.15660 * 13 12 11 32 32 H 1.09005 * 109.47286 * 193.71451 * 15 14 13 33 33 H 1.09000 * 109.47198 * 313.71364 * 15 14 13 34 34 H 1.08000 * 125.99161 * 180.18799 * 18 17 16 35 35 H 1.08002 * 126.59340 * 179.81933 * 19 18 17 36 36 H 1.08995 * 109.47201 * 171.41708 * 21 20 16 37 37 H 1.09001 * 109.45573 * 301.72057 * 24 14 13 38 38 H 1.09000 * 109.46346 * 181.75697 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 1.4915 -2.1140 -0.2384 9 6 3.4739 -1.2157 0.3346 10 1 4.0040 -0.5148 -0.3101 11 6 3.6712 -0.8133 1.7987 12 6 5.1602 -0.8959 2.1464 13 6 5.6634 -2.3162 1.8788 14 7 5.4530 -2.6533 0.4652 15 6 6.0492 -3.9559 0.1402 16 6 5.2035 -5.0561 0.7278 17 7 5.1563 -5.3881 1.9889 18 6 4.2968 -6.4057 2.1466 19 6 3.7984 -6.7215 0.9361 20 7 4.3732 -5.8657 0.0356 21 6 4.1323 -5.8335 -1.4091 22 9 3.4461 -4.6605 -1.7415 23 9 5.3558 -5.8660 -2.0867 24 6 4.0260 -2.6267 0.1196 25 1 -0.4850 -0.8367 -0.0749 26 1 3.3188 0.2075 1.9466 27 1 3.1080 -1.4899 2.4415 28 1 5.7174 -0.1903 1.5302 29 1 5.3022 -0.6511 3.1989 30 1 6.7266 -2.3747 2.1118 31 1 5.1153 -3.0198 2.5054 32 1 6.0975 -4.0735 -0.9425 33 1 7.0551 -4.0092 0.5566 34 1 4.0502 -6.8893 3.0803 35 1 3.0822 -7.4999 0.7178 36 1 3.5344 -6.6981 -1.6971 37 1 3.4856 -3.3289 0.7545 38 1 3.8999 -2.9108 -0.9251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595611564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:35 Heat of formation + Delta-G solvation = -25.121347 kcal Electronic energy + Delta-G solvation = -24111.332528 eV Core-core repulsion = 20432.917975 eV Total energy + Delta-G solvation = -3678.414553 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.48981 -47.54389 -42.17502 -38.30389 -34.07212 -33.58531 -32.22882 -30.10487 -29.62747 -26.61465 -25.86443 -24.53317 -22.49249 -21.78568 -20.90114 -20.37344 -18.92335 -17.96304 -17.94403 -17.57877 -17.42096 -15.64892 -15.19551 -14.79926 -14.64600 -14.31051 -14.18760 -13.95613 -13.83605 -13.62315 -13.30460 -13.24180 -12.80666 -12.60924 -12.45597 -12.13593 -11.89238 -11.45150 -11.05897 -10.57644 -10.46754 -10.23890 -10.10350 -9.95439 -9.75531 -9.54523 -9.17715 -8.62550 -8.57220 -8.15761 -7.94255 -6.37904 -3.99003 1.72227 1.99098 3.05133 3.31048 3.44836 3.50076 3.67950 3.85540 4.26763 4.43003 4.45679 4.55956 4.56766 5.13615 5.26754 5.34225 5.56304 5.63397 5.70458 5.78366 5.93479 6.01352 6.19495 6.25829 6.42647 6.49248 6.54105 6.60174 6.75899 6.82599 6.91820 7.01395 7.37112 7.48817 7.57313 7.69812 7.95038 8.26678 8.43521 8.96870 9.69337 11.02149 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.006361 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.820942 B = 4400.612925 C = 4903.098626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.913 5.913 2 C 0.029 3.971 3 Si 1.048 2.952 4 H -0.289 1.289 5 H -0.283 1.283 6 H -0.271 1.271 7 C -0.591 4.591 8 H 0.051 0.949 9 C 0.027 3.973 10 H 0.028 0.972 11 C -0.127 4.127 12 C -0.120 4.120 13 C 0.057 3.943 14 N -0.522 5.522 15 C 0.128 3.872 16 C 0.212 3.788 17 N -0.477 5.477 18 C -0.014 4.014 19 C -0.053 4.053 20 N -0.510 5.510 21 C 0.475 3.525 22 F -0.165 7.165 23 F -0.181 7.181 24 C 0.069 3.931 25 H 0.264 0.736 26 H 0.062 0.938 27 H 0.046 0.954 28 H 0.061 0.939 29 H 0.053 0.947 30 H 0.062 0.938 31 H 0.046 0.954 32 H 0.089 0.911 33 H 0.100 0.900 34 H 0.174 0.826 35 H 0.181 0.819 36 H 0.155 0.845 37 H 0.022 0.978 38 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.637 -13.926 -0.699 17.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.548 5.548 2 C -0.175 4.175 3 Si 0.877 3.123 4 H -0.215 1.215 5 H -0.209 1.209 6 H -0.197 1.197 7 C -0.629 4.629 8 H 0.069 0.931 9 C 0.008 3.992 10 H 0.046 0.954 11 C -0.164 4.164 12 C -0.157 4.157 13 C -0.070 4.070 14 N -0.245 5.245 15 C -0.003 4.003 16 C -0.052 4.052 17 N -0.195 5.195 18 C -0.160 4.160 19 C -0.182 4.182 20 N -0.206 5.206 21 C 0.339 3.661 22 F -0.147 7.147 23 F -0.162 7.162 24 C -0.058 4.058 25 H 0.074 0.926 26 H 0.081 0.919 27 H 0.065 0.935 28 H 0.079 0.921 29 H 0.072 0.928 30 H 0.081 0.919 31 H 0.065 0.935 32 H 0.107 0.893 33 H 0.118 0.882 34 H 0.192 0.808 35 H 0.198 0.802 36 H 0.172 0.828 37 H 0.040 0.960 38 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 11.085 -11.518 -0.454 15.992 hybrid contribution -0.898 -2.843 -0.253 2.992 sum 10.187 -14.361 -0.707 17.621 Atomic orbital electron populations 1.70868 1.06915 1.30550 1.46428 1.25769 0.96157 1.02472 0.93109 0.84023 0.75204 0.75598 0.77439 1.21524 1.20946 1.19735 1.21945 0.93468 0.95566 1.51935 0.93113 1.18995 0.96510 0.91624 0.92098 0.95353 1.22150 0.92783 1.01681 0.99833 1.21675 0.98593 0.95782 0.99694 1.22119 0.99837 0.97190 0.87884 1.62501 1.17888 1.23332 1.20768 1.21073 0.96324 0.82803 1.00075 1.24951 0.96092 0.96063 0.88080 1.70342 1.20472 1.13910 1.14818 1.22412 0.98595 0.97657 0.97326 1.22640 1.05422 1.00356 0.89738 1.46712 1.36781 1.29530 1.07537 1.21296 0.79658 0.88466 0.76679 1.93207 1.78782 1.51092 1.91585 1.93096 1.46841 1.96875 1.79409 1.22384 0.83641 0.99844 0.99899 0.92555 0.91914 0.93471 0.92050 0.92824 0.91908 0.93529 0.89316 0.88178 0.80844 0.80234 0.82801 0.95970 0.90896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -28.63 13.70 55.43 0.76 -27.87 16 2 C 0.03 0.85 5.37 -17.82 -0.10 0.76 16 3 Si 1.05 26.01 26.35 -169.99 -4.48 21.53 16 4 H -0.29 -7.21 7.11 56.52 0.40 -6.80 16 5 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 6 H -0.27 -6.21 5.42 56.52 0.31 -5.91 16 7 C -0.59 -17.05 8.84 -34.43 -0.30 -17.35 16 8 H 0.05 1.58 7.99 -52.49 -0.42 1.16 16 9 C 0.03 0.67 1.84 -91.69 -0.17 0.50 16 10 H 0.03 0.72 6.82 -51.93 -0.35 0.37 16 11 C -0.13 -2.92 4.95 -26.61 -0.13 -3.05 16 12 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 13 C 0.06 1.03 5.18 -3.84 -0.02 1.01 16 14 N -0.52 -9.74 4.86 -236.12 -1.15 -10.88 16 15 C 0.13 2.00 5.86 -4.98 -0.03 1.97 16 16 C 0.21 3.37 5.10 -155.41 -0.79 2.58 16 17 N -0.48 -7.89 10.03 -10.82 -0.11 -8.00 16 18 C -0.01 -0.19 11.87 -17.81 -0.21 -0.40 16 19 C -0.05 -0.62 11.55 -16.56 -0.19 -0.81 16 20 N -0.51 -6.87 3.03 -119.65 -0.36 -7.24 16 21 C 0.48 5.32 5.80 59.85 0.35 5.67 16 22 F -0.17 -2.53 14.51 2.25 0.03 -2.50 16 23 F -0.18 -2.07 15.90 2.25 0.04 -2.03 16 24 C 0.07 1.50 3.67 -3.83 -0.01 1.49 16 25 H 0.26 8.28 8.73 -40.82 -0.36 7.92 16 26 H 0.06 1.50 4.60 -51.93 -0.24 1.26 16 27 H 0.05 1.14 8.14 -51.93 -0.42 0.71 16 28 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.05 0.91 8.14 -51.94 -0.42 0.48 16 30 H 0.06 0.99 7.98 -51.93 -0.41 0.58 16 31 H 0.05 0.91 6.78 -51.93 -0.35 0.56 16 32 H 0.09 1.31 6.32 -51.93 -0.33 0.98 16 33 H 0.10 1.39 7.91 -51.93 -0.41 0.98 16 34 H 0.17 1.85 8.06 -52.49 -0.42 1.43 16 35 H 0.18 1.33 8.06 -52.49 -0.42 0.91 16 36 H 0.16 0.94 8.09 -51.93 -0.42 0.52 16 37 H 0.02 0.52 7.10 -51.93 -0.37 0.16 16 38 H 0.07 1.61 5.45 -51.93 -0.28 1.33 16 LS Contribution 302.46 15.07 4.56 4.56 Total: -1.00 -34.06 302.46 -7.44 -41.50 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -4.95 Total: 0.99 kcal Atomic # 6 Polarization: -8.29 SS G_CDS: -1.78 Total: -10.07 kcal Atomic # 7 Polarization: -53.13 SS G_CDS: -0.86 Total: -53.99 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.07 Total: -4.53 kcal Atomic # 14 Polarization: 26.01 SS G_CDS: -4.48 Total: 21.53 kcal Total LS contribution 4.56 Total: 4.56 kcal Total: -34.06 -7.44 -41.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.381 kcal (2) G-P(sol) polarization free energy of solvation -34.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.684 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.438 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds