Wall clock time and date at job start Tue Mar 31 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86791 * 120.00157 * 2 1 4 4 H 1.48498 * 109.47203 * 359.97438 * 3 2 1 5 5 H 1.48508 * 109.47209 * 239.99683 * 3 2 1 6 6 H 1.48501 * 109.47471 * 119.99772 * 3 2 1 7 7 C 1.37886 * 119.99607 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00441 * 14.83102 * 7 2 1 9 9 C 1.50706 * 119.99476 * 194.83142 * 7 2 1 10 10 H 1.08994 * 109.50017 * 306.09571 * 9 7 2 11 11 C 1.53112 * 109.50346 * 66.17602 * 9 7 2 12 12 C 1.53124 * 109.16116 * 177.59055 * 11 9 7 13 13 C 1.53034 * 109.27792 * 302.35034 * 12 11 9 14 14 N 1.46845 * 109.52887 * 59.17585 * 13 12 11 15 15 C 1.46894 * 111.00528 * 174.16097 * 14 13 12 16 16 C 1.50699 * 109.47129 * 73.71077 * 15 14 13 17 17 N 1.30492 * 125.65424 * 284.91445 * 16 15 14 18 18 C 1.34129 * 109.25923 * 179.89403 * 17 16 15 19 19 C 1.34662 * 108.02051 * 0.36905 * 18 17 16 20 20 N 1.35053 * 125.64918 * 105.22293 * 16 15 14 21 21 C 1.46498 * 126.39428 * 359.94275 * 20 16 15 22 22 F 1.39908 * 109.47179 * 291.41556 * 21 20 16 23 23 F 1.39898 * 109.47433 * 51.41450 * 21 20 16 24 24 C 1.46854 * 111.19619 * 298.26211 * 14 13 12 25 25 H 0.97003 * 119.99903 * 174.88164 * 1 2 3 26 26 H 1.08996 * 109.52789 * 297.49766 * 11 9 7 27 27 H 1.09007 * 109.52198 * 57.62723 * 11 9 7 28 28 H 1.08997 * 109.50013 * 62.28875 * 12 11 9 29 29 H 1.08989 * 109.50611 * 182.36640 * 12 11 9 30 30 H 1.09001 * 109.46332 * 179.19121 * 13 12 11 31 31 H 1.09003 * 109.46531 * 299.15660 * 13 12 11 32 32 H 1.09005 * 109.47286 * 193.71451 * 15 14 13 33 33 H 1.09000 * 109.47198 * 313.71364 * 15 14 13 34 34 H 1.08000 * 125.99161 * 180.18799 * 18 17 16 35 35 H 1.08002 * 126.59340 * 179.81933 * 19 18 17 36 36 H 1.08995 * 109.47201 * 171.41708 * 21 20 16 37 37 H 1.09001 * 109.45573 * 301.72057 * 24 14 13 38 38 H 1.09000 * 109.46346 * 181.75697 * 24 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 1.2842 2.7464 -0.0006 5 1 3.1030 1.6963 -1.2125 6 1 3.1029 1.6964 1.2125 7 6 2.0045 -1.1942 0.0005 8 1 1.4915 -2.1140 -0.2384 9 6 3.4739 -1.2157 0.3346 10 1 4.0040 -0.5148 -0.3101 11 6 3.6712 -0.8133 1.7987 12 6 5.1602 -0.8959 2.1464 13 6 5.6634 -2.3162 1.8788 14 7 5.4530 -2.6533 0.4652 15 6 6.0492 -3.9559 0.1402 16 6 5.2035 -5.0561 0.7278 17 7 5.1563 -5.3881 1.9889 18 6 4.2968 -6.4057 2.1466 19 6 3.7984 -6.7215 0.9361 20 7 4.3732 -5.8657 0.0356 21 6 4.1323 -5.8335 -1.4091 22 9 3.4461 -4.6605 -1.7415 23 9 5.3558 -5.8660 -2.0867 24 6 4.0260 -2.6267 0.1196 25 1 -0.4850 -0.8367 -0.0749 26 1 3.3188 0.2075 1.9466 27 1 3.1080 -1.4899 2.4415 28 1 5.7174 -0.1903 1.5302 29 1 5.3022 -0.6511 3.1989 30 1 6.7266 -2.3747 2.1118 31 1 5.1153 -3.0198 2.5054 32 1 6.0975 -4.0735 -0.9425 33 1 7.0551 -4.0092 0.5566 34 1 4.0502 -6.8893 3.0803 35 1 3.0822 -7.4999 0.7178 36 1 3.5344 -6.6981 -1.6971 37 1 3.4856 -3.3289 0.7545 38 1 3.8999 -2.9108 -0.9251 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595611564.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:34 Heat of formation + Delta-G solvation = -49.439427 kcal Electronic energy + Delta-G solvation = -24112.387039 eV Core-core repulsion = 20432.917975 eV Total energy + Delta-G solvation = -3679.469064 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -50.44442 -48.52413 -43.21593 -39.89213 -35.88107 -34.61053 -34.14208 -31.93697 -30.83840 -27.77248 -27.02337 -26.49429 -24.00763 -22.96135 -22.50108 -21.53726 -20.53344 -19.69798 -19.04873 -18.92929 -18.48908 -17.07815 -16.37614 -16.19608 -15.95152 -15.59051 -15.44083 -15.33914 -15.08043 -14.86896 -14.82007 -14.41156 -14.33327 -14.23108 -13.91342 -13.68561 -13.46054 -12.93187 -12.64207 -12.38607 -12.26613 -11.78377 -11.69003 -11.44091 -11.26550 -11.13279 -11.06037 -10.67944 -10.39043 -9.67467 -9.37761 -8.74854 -6.36758 0.70318 1.08656 1.45309 1.53388 1.73202 1.98377 2.48794 2.49198 2.94554 3.07729 3.10790 3.32532 3.51210 3.54553 4.04892 4.07897 4.19984 4.25225 4.36219 4.45996 4.56384 4.58252 4.66466 4.77676 4.88802 4.92407 5.00274 5.03201 5.20387 5.25618 5.48032 5.61314 5.71559 5.75833 5.83915 6.01783 6.08230 6.23101 6.56761 6.89182 7.40542 8.64082 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019242 B = 0.006361 C = 0.005709 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1454.820942 B = 4400.612925 C = 4903.098626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.943 5.943 2 C -0.022 4.022 3 Si 1.085 2.915 4 H -0.291 1.291 5 H -0.264 1.264 6 H -0.238 1.238 7 C -0.593 4.593 8 H 0.009 0.991 9 C 0.023 3.977 10 H 0.029 0.971 11 C -0.123 4.123 12 C -0.114 4.114 13 C 0.061 3.939 14 N -0.524 5.524 15 C 0.130 3.870 16 C 0.181 3.819 17 N -0.503 5.503 18 C -0.047 4.047 19 C -0.032 4.032 20 N -0.515 5.515 21 C 0.467 3.533 22 F -0.195 7.195 23 F -0.183 7.183 24 C 0.092 3.908 25 H 0.249 0.751 26 H 0.055 0.945 27 H 0.023 0.977 28 H 0.073 0.927 29 H 0.079 0.921 30 H 0.093 0.907 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.119 0.881 34 H 0.195 0.805 35 H 0.226 0.774 36 H 0.214 0.786 37 H -0.004 1.004 38 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.715 -14.430 -0.539 19.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.218 4.218 3 Si 0.906 3.094 4 H -0.217 1.217 5 H -0.189 1.189 6 H -0.163 1.163 7 C -0.631 4.631 8 H 0.028 0.972 9 C 0.004 3.996 10 H 0.047 0.953 11 C -0.160 4.160 12 C -0.151 4.151 13 C -0.066 4.066 14 N -0.247 5.247 15 C 0.000 4.000 16 C -0.083 4.083 17 N -0.223 5.223 18 C -0.192 4.192 19 C -0.161 4.161 20 N -0.210 5.210 21 C 0.332 3.668 22 F -0.176 7.176 23 F -0.164 7.164 24 C -0.036 4.036 25 H 0.057 0.943 26 H 0.073 0.927 27 H 0.042 0.958 28 H 0.091 0.909 29 H 0.097 0.903 30 H 0.112 0.888 31 H 0.047 0.953 32 H 0.112 0.888 33 H 0.137 0.863 34 H 0.212 0.788 35 H 0.243 0.757 36 H 0.230 0.770 37 H 0.014 0.986 38 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 13.189 -12.059 -0.297 17.873 hybrid contribution -1.598 -2.859 -0.310 3.290 sum 11.591 -14.918 -0.607 18.902 Atomic orbital electron populations 1.70999 1.08157 1.29600 1.49166 1.27237 0.96096 1.06316 0.92192 0.83604 0.74823 0.71368 0.79611 1.21701 1.18940 1.16311 1.22157 0.95909 0.93938 1.51140 0.97239 1.18967 0.93677 0.93630 0.93342 0.95295 1.22003 0.95858 1.00353 0.97828 1.21651 0.95163 0.96759 1.01565 1.22128 1.01324 0.96065 0.87125 1.62433 1.15232 1.25762 1.21245 1.21061 0.96904 0.81510 1.00526 1.24774 0.97679 0.97337 0.88464 1.70243 1.21596 1.14956 1.15461 1.22936 0.99164 0.97877 0.99197 1.23401 1.04220 0.99768 0.88711 1.46930 1.36218 1.29244 1.08650 1.22188 0.80003 0.88979 0.75583 1.93144 1.79437 1.53284 1.91756 1.93085 1.47204 1.96821 1.79288 1.21934 0.85603 0.97102 0.98930 0.94257 0.92683 0.95781 0.90853 0.90261 0.88841 0.95311 0.88842 0.86300 0.78848 0.75713 0.77019 0.98612 0.91602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -61.02 13.70 21.45 0.29 -60.73 16 2 C -0.02 -1.29 5.37 84.66 0.45 -0.84 16 3 Si 1.08 51.76 26.35 68.60 1.81 53.57 16 4 H -0.29 -13.92 7.11 99.48 0.71 -13.22 16 5 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 6 H -0.24 -10.12 5.42 99.48 0.54 -9.58 16 7 C -0.59 -35.33 8.84 25.60 0.23 -35.11 16 8 H 0.01 0.61 7.99 -2.91 -0.02 0.59 16 9 C 0.02 1.15 1.84 -11.49 -0.02 1.13 16 10 H 0.03 1.44 6.82 -2.39 -0.02 1.42 16 11 C -0.12 -5.55 4.95 30.67 0.15 -5.39 16 12 C -0.11 -4.01 6.09 30.65 0.19 -3.82 16 13 C 0.06 2.07 5.18 86.33 0.45 2.52 16 14 N -0.52 -18.83 4.86 -900.93 -4.38 -23.21 16 15 C 0.13 3.88 5.86 85.56 0.50 4.38 16 16 C 0.18 5.57 5.10 138.13 0.70 6.28 16 17 N -0.50 -16.24 10.03 -188.14 -1.89 -18.13 16 18 C -0.05 -1.20 11.87 83.52 0.99 -0.21 16 19 C -0.03 -0.68 11.55 83.08 0.96 0.28 16 20 N -0.52 -13.04 3.03 -532.46 -1.61 -14.65 16 21 C 0.47 9.58 5.80 127.77 0.74 10.32 16 22 F -0.19 -5.94 14.51 44.97 0.65 -5.29 16 23 F -0.18 -3.86 15.90 44.97 0.71 -3.15 16 24 C 0.09 4.03 3.67 86.32 0.32 4.35 16 25 H 0.25 16.36 8.73 -92.71 -0.81 15.55 16 26 H 0.05 2.54 4.60 -2.39 -0.01 2.53 16 27 H 0.02 1.16 8.14 -2.38 -0.02 1.14 16 28 H 0.07 2.45 8.14 -2.39 -0.02 2.43 16 29 H 0.08 2.41 8.14 -2.39 -0.02 2.39 16 30 H 0.09 2.63 7.98 -2.39 -0.02 2.61 16 31 H 0.03 1.09 6.78 -2.39 -0.02 1.08 16 32 H 0.09 2.65 6.32 -2.38 -0.02 2.63 16 33 H 0.12 3.04 7.91 -2.39 -0.02 3.02 16 34 H 0.19 3.85 8.06 -2.91 -0.02 3.83 16 35 H 0.23 2.37 8.06 -2.91 -0.02 2.35 16 36 H 0.21 1.79 8.09 -2.39 -0.02 1.78 16 37 H 0.00 -0.21 7.10 -2.39 -0.02 -0.23 16 38 H 0.07 2.96 5.45 -2.39 -0.01 2.95 16 Total: -1.00 -77.63 302.46 2.12 -75.50 By element: Atomic # 1 Polarization: 11.32 SS G_CDS: 0.87 Total: 12.19 kcal Atomic # 6 Polarization: -21.77 SS G_CDS: 5.66 Total: -16.11 kcal Atomic # 7 Polarization: -109.13 SS G_CDS: -7.58 Total: -116.71 kcal Atomic # 9 Polarization: -9.81 SS G_CDS: 1.37 Total: -8.44 kcal Atomic # 14 Polarization: 51.76 SS G_CDS: 1.81 Total: 53.57 kcal Total: -77.63 2.12 -75.50 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595611564.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.063 kcal (2) G-P(sol) polarization free energy of solvation -77.627 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.563 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.503 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds