Wall clock time and date at job start Tue Mar 31 2020 06:29:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48506 * 109.47033 * 264.78088 * 3 2 1 5 5 H 1.48494 * 109.47389 * 24.78158 * 3 2 1 6 6 H 1.48494 * 109.46853 * 144.78459 * 3 2 1 7 7 C 1.37876 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 5.77402 * 7 2 1 9 9 C 1.50698 * 120.00221 * 185.76822 * 7 2 1 10 10 H 1.09004 * 109.53151 * 335.27438 * 9 7 2 11 11 C 1.53125 * 109.50113 * 95.36865 * 9 7 2 12 12 C 1.53116 * 109.16048 * 177.59993 * 11 9 7 13 13 C 1.53032 * 109.27626 * 302.34512 * 12 11 9 14 14 N 1.46843 * 109.52552 * 59.18363 * 13 12 11 15 15 C 1.46896 * 111.00183 * 174.16216 * 14 13 12 16 16 C 1.50704 * 109.47179 * 294.20483 * 15 14 13 17 17 C 1.33997 * 124.91998 * 89.99677 * 16 15 14 18 18 C 1.46781 * 106.18318 * 179.97438 * 17 16 15 19 19 C 1.39414 * 134.37204 * 180.02562 * 18 17 16 20 20 C 1.36730 * 119.71634 * 180.27864 * 19 18 17 21 21 C 1.38740 * 120.42235 * 359.48110 * 20 19 18 22 22 C 1.37851 * 120.68254 * 0.50509 * 21 20 19 23 23 C 1.38941 * 119.81776 * 359.76003 * 22 21 20 24 24 O 1.34449 * 124.92635 * 269.98248 * 16 15 14 25 25 C 1.46847 * 111.19584 * 298.25500 * 14 13 12 26 26 H 0.97004 * 119.99491 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.52120 * 297.50443 * 11 9 7 28 28 H 1.08999 * 109.51806 * 57.62629 * 11 9 7 29 29 H 1.09001 * 109.50279 * 62.28591 * 12 11 9 30 30 H 1.09004 * 109.49944 * 182.36347 * 12 11 9 31 31 H 1.08995 * 109.46455 * 299.16415 * 13 12 11 32 32 H 1.09000 * 109.46562 * 179.19608 * 13 12 11 33 33 H 1.09007 * 109.47791 * 174.21094 * 15 14 13 34 34 H 1.08994 * 109.47556 * 54.20814 * 15 14 13 35 35 H 1.08002 * 126.90899 * 0.02562 * 17 16 15 36 36 H 1.08000 * 120.13445 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.78894 * 179.72059 * 20 19 18 38 38 H 1.08000 * 119.66353 * 180.28851 * 21 20 19 39 39 H 1.08002 * 120.09565 * 179.74045 * 22 21 20 40 40 H 1.09002 * 109.46258 * 181.76032 * 25 14 13 41 41 H 1.09002 * 109.46381 * 301.72290 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3960 2.6820 0.5868 6 1 3.4873 1.4744 0.8073 7 6 2.0045 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0950 9 6 3.5058 -1.1976 0.1306 10 1 3.9043 -0.2447 -0.2179 11 6 3.8902 -1.4065 1.5980 12 6 5.4157 -1.4688 1.7139 13 6 5.9442 -2.5976 0.8260 14 7 5.5510 -2.3511 -0.5672 15 6 6.1574 -3.3402 -1.4682 16 6 7.6539 -3.1620 -1.4756 17 6 8.5039 -3.7787 -0.6433 18 6 9.8463 -3.3113 -1.0093 19 6 11.1317 -3.5709 -0.5360 20 6 12.2043 -2.9474 -1.1108 21 6 12.0219 -2.0675 -2.1678 22 6 10.7586 -1.7987 -2.6494 23 6 9.6545 -2.4174 -2.0761 24 8 8.3296 -2.3615 -2.3183 25 6 4.0897 -2.3342 -0.7114 26 1 -0.4849 0.8401 -0.0004 27 1 3.5131 -0.5762 2.1951 28 1 3.4581 -2.3400 1.9583 29 1 5.8443 -0.5202 1.3904 30 1 5.6944 -1.6593 2.7504 31 1 5.5260 -3.5475 1.1588 32 1 7.0313 -2.6354 0.8952 33 1 5.7698 -3.1986 -2.4771 34 1 5.9128 -4.3446 -1.1227 35 1 8.2520 -4.4795 0.1390 36 1 11.2790 -4.2577 0.2843 37 1 13.2002 -3.1442 -0.7421 38 1 12.8783 -1.5853 -2.6157 39 1 10.6272 -1.1089 -3.4700 40 1 3.8299 -2.1808 -1.7588 41 1 3.6802 -3.2855 -0.3714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:53 Heat of formation + Delta-G solvation = 25.135907 kcal Electronic energy + Delta-G solvation = -22003.337299 eV Core-core repulsion = 18849.038843 eV Total energy + Delta-G solvation = -3154.298456 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.48872 -38.57914 -37.89145 -34.27536 -32.73437 -32.13587 -30.53687 -30.32516 -29.64677 -26.29284 -25.03144 -23.12069 -22.47970 -21.93128 -21.23612 -20.68761 -18.81575 -17.43157 -16.97992 -16.78773 -16.28899 -15.68520 -15.14931 -14.50206 -14.36021 -14.12416 -13.85450 -13.62041 -13.52353 -13.15199 -12.71278 -12.51709 -12.44794 -12.31817 -12.19698 -11.99590 -11.46520 -11.16518 -11.00932 -10.98945 -10.70858 -10.21934 -10.15098 -9.83128 -9.56562 -9.36056 -8.96493 -8.72463 -8.50538 -8.25245 -7.91394 -6.08433 -4.08025 0.79942 1.24992 2.27192 2.67451 3.32779 3.40437 3.45159 3.59624 4.23047 4.42548 4.44436 4.56544 4.77788 4.99213 5.10657 5.11685 5.17666 5.22232 5.34530 5.43405 5.53993 5.59420 5.65366 5.74485 5.83486 5.98075 6.11627 6.11965 6.13158 6.27813 6.28467 6.35336 6.37565 6.46477 6.56681 6.64619 6.80278 6.88653 7.16830 7.26171 7.41830 7.48070 7.54101 7.83595 8.51414 8.96064 9.55524 11.04648 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003674 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.512606 B = 7618.668527 C = 7847.615890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.073 3.927 3 Si 0.878 3.122 4 H -0.275 1.275 5 H -0.291 1.291 6 H -0.263 1.263 7 C -0.513 4.513 8 H 0.071 0.929 9 C 0.021 3.979 10 H 0.040 0.960 11 C -0.112 4.112 12 C -0.120 4.120 13 C 0.055 3.945 14 N -0.539 5.539 15 C 0.121 3.879 16 C 0.068 3.932 17 C -0.216 4.216 18 C -0.125 4.125 19 C -0.075 4.075 20 C -0.139 4.139 21 C -0.101 4.101 22 C -0.105 4.105 23 C 0.050 3.950 24 O -0.184 6.184 25 C 0.073 3.927 26 H 0.264 0.736 27 H 0.052 0.948 28 H 0.050 0.950 29 H 0.061 0.939 30 H 0.053 0.947 31 H 0.030 0.970 32 H 0.067 0.933 33 H 0.095 0.905 34 H 0.068 0.932 35 H 0.155 0.845 36 H 0.125 0.875 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.131 0.869 40 H 0.071 0.929 41 H 0.028 0.972 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.306 -7.150 -1.973 23.507 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.538 5.538 2 C -0.129 4.129 3 Si 0.706 3.294 4 H -0.201 1.201 5 H -0.218 1.218 6 H -0.188 1.188 7 C -0.551 4.551 8 H 0.090 0.910 9 C 0.001 3.999 10 H 0.058 0.942 11 C -0.151 4.151 12 C -0.157 4.157 13 C -0.072 4.072 14 N -0.264 5.264 15 C -0.007 4.007 16 C 0.020 3.980 17 C -0.236 4.236 18 C -0.126 4.126 19 C -0.093 4.093 20 C -0.157 4.157 21 C -0.119 4.119 22 C -0.124 4.124 23 C 0.003 3.997 24 O -0.084 6.084 25 C -0.053 4.053 26 H 0.074 0.926 27 H 0.071 0.929 28 H 0.069 0.931 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.048 0.952 32 H 0.085 0.915 33 H 0.114 0.886 34 H 0.086 0.914 35 H 0.173 0.827 36 H 0.143 0.857 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.149 0.851 40 H 0.089 0.911 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 22.159 -6.404 -2.317 23.182 hybrid contribution 0.111 0.062 0.379 0.399 sum 22.270 -6.342 -1.939 23.237 Atomic orbital electron populations 1.69918 1.06368 1.27036 1.50525 1.25045 0.94657 0.99039 0.94159 0.86838 0.80180 0.83465 0.78965 1.20123 1.21779 1.18778 1.20936 0.89089 0.94571 1.50550 0.91047 1.19161 0.95846 0.94277 0.90574 0.94171 1.21878 0.91918 1.00922 1.00351 1.21667 0.98459 0.98314 0.97298 1.22141 0.99613 0.97446 0.88024 1.62029 1.11896 1.46998 1.05494 1.20652 0.84434 0.95456 1.00167 1.22394 0.94553 0.90872 0.90202 1.22205 0.90154 1.07079 1.04160 1.19962 0.94354 1.00046 0.98252 1.20269 0.90213 0.99336 0.99454 1.20737 0.98786 0.98590 0.97625 1.20881 0.95734 0.98387 0.96903 1.19961 0.88907 1.01647 1.01837 1.19675 0.82937 0.99496 0.97621 1.84010 1.16319 1.56520 1.51574 1.22332 0.82177 0.99429 1.01367 0.92648 0.92882 0.93125 0.92044 0.92794 0.95208 0.91480 0.88629 0.91402 0.82719 0.85730 0.85583 0.84999 0.85135 0.91076 0.95332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.32 13.96 55.43 0.77 -26.54 16 2 C 0.07 2.08 5.47 -17.82 -0.10 1.98 16 3 Si 0.88 21.76 27.02 -169.99 -4.59 17.17 16 4 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 5 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 6 H -0.26 -6.31 6.78 56.52 0.38 -5.93 16 7 C -0.51 -14.08 8.86 -34.44 -0.31 -14.39 16 8 H 0.07 2.12 8.06 -52.49 -0.42 1.69 16 9 C 0.02 0.48 1.95 -91.69 -0.18 0.30 16 10 H 0.04 0.98 5.25 -51.93 -0.27 0.71 16 11 C -0.11 -2.35 5.27 -26.61 -0.14 -2.49 16 12 C -0.12 -2.10 6.09 -26.65 -0.16 -2.26 16 13 C 0.06 0.89 5.24 -3.84 -0.02 0.87 16 14 N -0.54 -9.32 4.65 -236.12 -1.10 -10.42 16 15 C 0.12 1.71 5.47 -4.98 -0.03 1.68 16 16 C 0.07 0.98 6.16 -35.80 -0.22 0.76 16 17 C -0.22 -2.81 9.39 -37.62 -0.35 -3.16 16 18 C -0.13 -1.65 6.40 -105.16 -0.67 -2.32 16 19 C -0.07 -0.79 10.05 -39.69 -0.40 -1.19 16 20 C -0.14 -1.27 9.98 -39.94 -0.40 -1.67 16 21 C -0.10 -0.93 10.01 -39.54 -0.40 -1.32 16 22 C -0.11 -1.19 10.07 -39.46 -0.40 -1.58 16 23 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 24 O -0.18 -2.87 10.58 3.92 0.04 -2.83 16 25 C 0.07 1.44 4.72 -3.84 -0.02 1.43 16 26 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 27 H 0.05 1.16 8.14 -51.93 -0.42 0.74 16 28 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 29 H 0.06 1.14 8.14 -51.93 -0.42 0.71 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.03 0.46 8.14 -51.93 -0.42 0.03 16 32 H 0.07 1.00 5.95 -51.93 -0.31 0.69 16 33 H 0.10 1.30 7.99 -51.92 -0.41 0.88 16 34 H 0.07 0.84 8.12 -51.93 -0.42 0.41 16 35 H 0.16 1.69 8.06 -52.49 -0.42 1.26 16 36 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 0.82 8.06 -52.49 -0.42 0.40 16 39 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 40 H 0.07 1.41 8.02 -51.93 -0.42 0.99 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 330.59 15.07 4.98 4.98 Total: -1.00 -30.97 330.59 -10.03 -40.99 By element: Atomic # 1 Polarization: 5.65 SS G_CDS: -6.06 Total: -0.41 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: -4.07 Total: -22.94 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.32 Total: -36.96 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 21.76 SS G_CDS: -4.59 Total: 17.17 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -30.97 -10.03 -40.99 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.128 kcal (2) G-P(sol) polarization free energy of solvation -30.966 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.162 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.026 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.992 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.136 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds