Wall clock time and date at job start Tue Mar 31 2020 06:29:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86797 * 120.00128 * 2 1 4 4 H 1.48506 * 109.47033 * 264.78088 * 3 2 1 5 5 H 1.48494 * 109.47389 * 24.78158 * 3 2 1 6 6 H 1.48494 * 109.46853 * 144.78459 * 3 2 1 7 7 C 1.37876 * 119.99673 * 180.02562 * 2 1 3 8 8 H 1.08002 * 120.00047 * 5.77402 * 7 2 1 9 9 C 1.50698 * 120.00221 * 185.76822 * 7 2 1 10 10 H 1.09004 * 109.53151 * 335.27438 * 9 7 2 11 11 C 1.53125 * 109.50113 * 95.36865 * 9 7 2 12 12 C 1.53116 * 109.16048 * 177.59993 * 11 9 7 13 13 C 1.53032 * 109.27626 * 302.34512 * 12 11 9 14 14 N 1.46843 * 109.52552 * 59.18363 * 13 12 11 15 15 C 1.46896 * 111.00183 * 174.16216 * 14 13 12 16 16 C 1.50704 * 109.47179 * 294.20483 * 15 14 13 17 17 C 1.33997 * 124.91998 * 89.99677 * 16 15 14 18 18 C 1.46781 * 106.18318 * 179.97438 * 17 16 15 19 19 C 1.39414 * 134.37204 * 180.02562 * 18 17 16 20 20 C 1.36730 * 119.71634 * 180.27864 * 19 18 17 21 21 C 1.38740 * 120.42235 * 359.48110 * 20 19 18 22 22 C 1.37851 * 120.68254 * 0.50509 * 21 20 19 23 23 C 1.38941 * 119.81776 * 359.76003 * 22 21 20 24 24 O 1.34449 * 124.92635 * 269.98248 * 16 15 14 25 25 C 1.46847 * 111.19584 * 298.25500 * 14 13 12 26 26 H 0.97004 * 119.99491 * 0.02562 * 1 2 3 27 27 H 1.09005 * 109.52120 * 297.50443 * 11 9 7 28 28 H 1.08999 * 109.51806 * 57.62629 * 11 9 7 29 29 H 1.09001 * 109.50279 * 62.28591 * 12 11 9 30 30 H 1.09004 * 109.49944 * 182.36347 * 12 11 9 31 31 H 1.08995 * 109.46455 * 299.16415 * 13 12 11 32 32 H 1.09000 * 109.46562 * 179.19608 * 13 12 11 33 33 H 1.09007 * 109.47791 * 174.21094 * 15 14 13 34 34 H 1.08994 * 109.47556 * 54.20814 * 15 14 13 35 35 H 1.08002 * 126.90899 * 0.02562 * 17 16 15 36 36 H 1.08000 * 120.13445 * 359.97438 * 19 18 17 37 37 H 1.08008 * 119.78894 * 179.72059 * 20 19 18 38 38 H 1.08000 * 119.66353 * 180.28851 * 21 20 19 39 39 H 1.08002 * 120.09565 * 179.74045 * 22 21 20 40 40 H 1.09002 * 109.46258 * 181.76032 * 25 14 13 41 41 H 1.09002 * 109.46381 * 301.72290 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 2.6070 1.9827 -1.3943 5 1 1.3960 2.6820 0.5868 6 1 3.4873 1.4744 0.8073 7 6 2.0045 -1.1941 -0.0005 8 1 1.4686 -2.1270 -0.0950 9 6 3.5058 -1.1976 0.1306 10 1 3.9043 -0.2447 -0.2179 11 6 3.8902 -1.4065 1.5980 12 6 5.4157 -1.4688 1.7139 13 6 5.9442 -2.5976 0.8260 14 7 5.5510 -2.3511 -0.5672 15 6 6.1574 -3.3402 -1.4682 16 6 7.6539 -3.1620 -1.4756 17 6 8.5039 -3.7787 -0.6433 18 6 9.8463 -3.3113 -1.0093 19 6 11.1317 -3.5709 -0.5360 20 6 12.2043 -2.9474 -1.1108 21 6 12.0219 -2.0675 -2.1678 22 6 10.7586 -1.7987 -2.6494 23 6 9.6545 -2.4174 -2.0761 24 8 8.3296 -2.3615 -2.3183 25 6 4.0897 -2.3342 -0.7114 26 1 -0.4849 0.8401 -0.0004 27 1 3.5131 -0.5762 2.1951 28 1 3.4581 -2.3400 1.9583 29 1 5.8443 -0.5202 1.3904 30 1 5.6944 -1.6593 2.7504 31 1 5.5260 -3.5475 1.1588 32 1 7.0313 -2.6354 0.8952 33 1 5.7698 -3.1986 -2.4771 34 1 5.9128 -4.3446 -1.1227 35 1 8.2520 -4.4795 0.1390 36 1 11.2790 -4.2577 0.2843 37 1 13.2002 -3.1442 -0.7421 38 1 12.8783 -1.5853 -2.6157 39 1 10.6272 -1.1089 -3.4700 40 1 3.8299 -2.1808 -1.7588 41 1 3.6802 -3.2855 -0.3714 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616105.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:52 Heat of formation + Delta-G solvation = 7.087156 kcal Electronic energy + Delta-G solvation = -22004.119952 eV Core-core repulsion = 18849.038843 eV Total energy + Delta-G solvation = -3155.081108 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -43.43222 -39.97448 -38.75338 -35.84343 -34.29936 -33.44407 -32.00823 -31.32463 -30.74304 -27.40122 -26.93745 -24.19163 -23.60824 -23.23817 -22.39264 -21.78449 -20.45505 -19.01770 -18.30235 -17.74082 -17.44994 -16.79479 -16.32996 -16.05841 -15.69355 -15.29413 -15.06412 -15.03367 -14.66855 -14.53978 -14.16685 -13.97247 -13.77812 -13.44465 -13.17770 -12.99076 -12.94289 -12.84888 -12.56346 -12.35569 -11.84708 -11.81568 -11.77814 -11.32900 -11.11667 -11.06943 -10.84024 -10.63941 -9.57284 -9.33638 -9.05252 -8.29850 -6.32342 -0.04311 0.42628 1.31684 1.34707 1.36252 1.47462 1.75623 2.34969 2.79704 2.99558 3.11140 3.41807 3.74169 4.02399 4.04724 4.10326 4.15895 4.21918 4.25948 4.31095 4.40924 4.46834 4.53698 4.58227 4.65837 4.78420 4.79991 4.83915 4.95982 4.97248 5.05938 5.17570 5.23656 5.26687 5.37033 5.49862 5.53200 5.54972 5.63550 5.73958 5.80111 6.09012 6.13509 6.26439 6.36164 6.75649 7.34043 8.86962 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028434 B = 0.003674 C = 0.003567 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 984.512606 B = 7618.668527 C = 7847.615890 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.016 3.984 3 Si 0.939 3.061 4 H -0.271 1.271 5 H -0.288 1.288 6 H -0.250 1.250 7 C -0.512 4.512 8 H 0.035 0.965 9 C 0.017 3.983 10 H 0.029 0.971 11 C -0.109 4.109 12 C -0.113 4.113 13 C 0.058 3.942 14 N -0.552 5.552 15 C 0.125 3.875 16 C 0.042 3.958 17 C -0.204 4.204 18 C -0.149 4.149 19 C -0.081 4.081 20 C -0.136 4.136 21 C -0.091 4.091 22 C -0.125 4.125 23 C 0.019 3.981 24 O -0.211 6.211 25 C 0.085 3.915 26 H 0.265 0.735 27 H 0.037 0.963 28 H 0.049 0.951 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.042 0.958 32 H 0.084 0.916 33 H 0.093 0.907 34 H 0.090 0.910 35 H 0.176 0.824 36 H 0.147 0.853 37 H 0.161 0.839 38 H 0.166 0.834 39 H 0.140 0.860 40 H 0.063 0.937 41 H 0.029 0.971 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.297 -7.527 -1.231 27.380 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.589 5.589 2 C -0.181 4.181 3 Si 0.764 3.236 4 H -0.196 1.196 5 H -0.214 1.214 6 H -0.174 1.174 7 C -0.550 4.550 8 H 0.054 0.946 9 C -0.002 4.002 10 H 0.047 0.953 11 C -0.148 4.148 12 C -0.151 4.151 13 C -0.069 4.069 14 N -0.277 5.277 15 C -0.002 4.002 16 C -0.006 4.006 17 C -0.224 4.224 18 C -0.150 4.150 19 C -0.099 4.099 20 C -0.153 4.153 21 C -0.108 4.108 22 C -0.143 4.143 23 C -0.028 4.028 24 O -0.113 6.113 25 C -0.042 4.042 26 H 0.074 0.926 27 H 0.056 0.944 28 H 0.067 0.933 29 H 0.070 0.930 30 H 0.101 0.899 31 H 0.060 0.940 32 H 0.102 0.898 33 H 0.112 0.888 34 H 0.108 0.892 35 H 0.193 0.807 36 H 0.165 0.835 37 H 0.178 0.822 38 H 0.183 0.817 39 H 0.158 0.842 40 H 0.081 0.919 41 H 0.047 0.953 Dipole moment (debyes) X Y Z Total from point charges 26.179 -6.799 -1.574 27.093 hybrid contribution -1.004 0.092 0.124 1.016 sum 25.175 -6.707 -1.450 26.093 Atomic orbital electron populations 1.70052 1.08093 1.27972 1.52786 1.25839 0.95330 1.02670 0.94251 0.85853 0.79259 0.79199 0.79285 1.19609 1.21438 1.17413 1.21229 0.91578 0.93072 1.49164 0.94630 1.19127 0.92968 0.95182 0.92926 0.95266 1.21736 0.94809 1.00187 0.98039 1.21616 0.95316 0.98645 0.99524 1.22157 1.00568 0.97254 0.86914 1.61881 1.09879 1.49075 1.06884 1.20638 0.84571 0.95608 0.99412 1.22364 0.94490 0.92332 0.91418 1.22494 0.90044 1.06243 1.03569 1.20260 0.95404 1.00650 0.98714 1.20647 0.89538 0.99702 1.00012 1.21213 0.99972 0.97332 0.96830 1.21365 0.95782 0.97448 0.96237 1.20335 0.89189 1.02218 1.02581 1.20209 0.82764 1.00925 0.98938 1.83945 1.17437 1.57399 1.52493 1.21969 0.84236 0.97920 1.00088 0.92573 0.94414 0.93264 0.92993 0.89884 0.93955 0.89768 0.88819 0.89216 0.80688 0.83548 0.82187 0.81656 0.84238 0.91870 0.95317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.48 13.96 21.45 0.30 -59.18 16 2 C 0.02 0.95 5.47 84.65 0.46 1.41 16 3 Si 0.94 45.59 27.02 68.60 1.85 47.44 16 4 H -0.27 -12.84 7.11 99.48 0.71 -12.13 16 5 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 6 H -0.25 -11.51 6.78 99.48 0.67 -10.83 16 7 C -0.51 -28.99 8.86 25.60 0.23 -28.76 16 8 H 0.04 2.21 8.06 -2.91 -0.02 2.19 16 9 C 0.02 0.80 1.95 -11.49 -0.02 0.78 16 10 H 0.03 1.42 5.25 -2.38 -0.01 1.41 16 11 C -0.11 -4.50 5.27 30.67 0.16 -4.34 16 12 C -0.11 -3.72 6.09 30.64 0.19 -3.53 16 13 C 0.06 1.73 5.24 86.32 0.45 2.18 16 14 N -0.55 -18.47 4.65 -900.96 -4.19 -22.65 16 15 C 0.12 3.41 5.47 85.56 0.47 3.88 16 16 C 0.04 1.16 6.16 24.72 0.15 1.32 16 17 C -0.20 -4.91 9.39 23.54 0.22 -4.69 16 18 C -0.15 -3.66 6.40 -20.21 -0.13 -3.79 16 19 C -0.08 -1.47 10.05 22.20 0.22 -1.24 16 20 C -0.14 -1.93 9.98 22.04 0.22 -1.71 16 21 C -0.09 -1.36 10.01 22.30 0.22 -1.14 16 22 C -0.12 -2.63 10.07 22.35 0.23 -2.41 16 23 C 0.02 0.51 7.42 22.99 0.17 0.68 16 24 O -0.21 -6.62 10.58 -8.89 -0.09 -6.71 16 25 C 0.08 3.35 4.72 86.32 0.41 3.76 16 26 H 0.27 15.62 8.31 -92.71 -0.77 14.85 16 27 H 0.04 1.63 8.14 -2.38 -0.02 1.61 16 28 H 0.05 2.00 8.14 -2.39 -0.02 1.99 16 29 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 31 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 32 H 0.08 2.25 5.95 -2.39 -0.01 2.24 16 33 H 0.09 2.54 7.99 -2.38 -0.02 2.52 16 34 H 0.09 2.04 8.12 -2.39 -0.02 2.02 16 35 H 0.18 3.28 8.06 -2.91 -0.02 3.26 16 36 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 37 H 0.16 1.18 8.06 -2.91 -0.02 1.16 16 38 H 0.17 1.30 8.06 -2.91 -0.02 1.28 16 39 H 0.14 2.50 8.06 -2.91 -0.02 2.48 16 40 H 0.06 2.55 8.02 -2.39 -0.02 2.53 16 41 H 0.03 1.12 8.14 -2.39 -0.02 1.10 16 Total: -1.00 -69.51 330.59 2.50 -67.01 By element: Atomic # 1 Polarization: 10.71 SS G_CDS: 0.98 Total: 11.69 kcal Atomic # 6 Polarization: -41.24 SS G_CDS: 3.65 Total: -37.59 kcal Atomic # 7 Polarization: -77.94 SS G_CDS: -3.89 Total: -81.83 kcal Atomic # 8 Polarization: -6.62 SS G_CDS: -0.09 Total: -6.71 kcal Atomic # 14 Polarization: 45.59 SS G_CDS: 1.85 Total: 47.44 kcal Total: -69.51 2.50 -67.01 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616105.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.097 kcal (2) G-P(sol) polarization free energy of solvation -69.508 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.498 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.087 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.07 seconds