Wall clock time and date at job start Tue Mar 31 2020 06:29:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47102 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.46838 * 29.99667 * 3 2 1 6 6 H 1.48499 * 109.47406 * 149.99623 * 3 2 1 7 7 C 1.37874 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99727 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00595 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50473 * 60.07802 * 9 7 2 11 11 C 1.53127 * 109.50155 * 300.00274 * 9 7 2 12 12 C 1.53121 * 109.15951 * 182.40335 * 11 9 7 13 13 C 1.53039 * 109.27805 * 57.65287 * 12 11 9 14 14 N 1.46845 * 109.52354 * 300.82105 * 13 12 11 15 15 C 1.46903 * 110.99885 * 185.83788 * 14 13 12 16 16 C 1.50705 * 109.46991 * 66.04899 * 15 14 13 17 17 C 1.33990 * 124.92493 * 89.99354 * 16 15 14 18 18 C 1.46788 * 106.18385 * 179.75154 * 17 16 15 19 19 C 1.39404 * 134.37034 * 180.22985 * 18 17 16 20 20 C 1.36737 * 119.71628 * 180.02562 * 19 18 17 21 21 C 1.38734 * 120.41902 * 0.02562 * 20 19 18 22 22 C 1.37846 * 120.68618 * 359.97438 * 21 20 19 23 23 C 1.38948 * 119.81653 * 359.96385 * 22 21 20 24 24 O 1.34454 * 124.91766 * 270.14127 * 16 15 14 25 25 C 1.46847 * 111.20032 * 61.74126 * 14 13 12 26 26 H 0.96996 * 119.99924 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.51993 * 62.49817 * 11 9 7 28 28 H 1.09000 * 109.57284 * 302.33866 * 11 9 7 29 29 H 1.09001 * 109.50185 * 297.71659 * 12 11 9 30 30 H 1.08999 * 109.50259 * 177.59020 * 12 11 9 31 31 H 1.08995 * 109.46346 * 180.80393 * 13 12 11 32 32 H 1.09001 * 109.46042 * 60.83385 * 13 12 11 33 33 H 1.08995 * 109.47167 * 306.05120 * 15 14 13 34 34 H 1.08996 * 109.47037 * 186.04391 * 15 14 13 35 35 H 1.08002 * 126.91012 * 0.02562 * 17 16 15 36 36 H 1.08010 * 120.14450 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.78679 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.66064 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.09468 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.46135 * 58.27712 * 25 14 13 41 41 H 1.09002 * 109.46528 * 178.23941 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6813 0.8916 11 6 4.0233 -0.4725 -1.2489 12 6 5.5533 -0.5294 -1.2710 13 6 6.0050 -1.9912 -1.2386 14 7 5.4909 -2.6370 -0.0241 15 6 6.0188 -4.0012 0.1106 16 6 7.5075 -3.9436 0.3380 17 6 8.0978 -3.8718 1.5387 18 6 9.5430 -3.8430 1.2829 19 6 10.6753 -3.7779 2.0935 20 6 11.9178 -3.7673 1.5226 21 6 12.0576 -3.8204 0.1434 22 6 10.9496 -3.8850 -0.6741 23 6 9.6779 -3.8982 -0.1143 24 8 8.4356 -3.9539 -0.6348 25 6 4.0225 -2.6365 -0.0034 26 1 -0.4850 0.8400 -0.0004 27 1 3.6977 0.5674 -1.2280 28 1 3.6276 -0.9603 -2.1397 29 1 5.9495 -0.0067 -0.4004 30 1 5.9219 -0.0547 -2.1803 31 1 7.0941 -2.0349 -1.2399 32 1 5.6198 -2.5099 -2.1165 33 1 5.8119 -4.5624 -0.8006 34 1 5.5408 -4.4938 0.9572 35 1 7.6089 -3.8454 2.5013 36 1 10.5716 -3.7352 3.1677 37 1 12.7958 -3.7165 2.1495 38 1 13.0449 -3.8109 -0.2945 39 1 11.0695 -3.9256 -1.7466 40 1 3.6467 -3.1522 -0.8871 41 1 3.6717 -3.1488 0.8925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595616106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:56 Heat of formation + Delta-G solvation = 31.769292 kcal Electronic energy + Delta-G solvation = -22046.962803 eV Core-core repulsion = 18892.951993 eV Total energy + Delta-G solvation = -3154.010811 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -42.49661 -38.61609 -37.88879 -34.32557 -32.84189 -32.06420 -30.54637 -30.33088 -29.72433 -26.27699 -24.97029 -23.23681 -22.59745 -21.74938 -21.49224 -20.56281 -18.92038 -17.42887 -16.92073 -16.74317 -16.36910 -15.68053 -15.27957 -14.54254 -14.41016 -14.15287 -13.92969 -13.66937 -13.35829 -13.10015 -12.97718 -12.60415 -12.40189 -12.30606 -12.16058 -11.95317 -11.60701 -11.13266 -11.07246 -11.02519 -10.52611 -10.20628 -10.10355 -9.96896 -9.72199 -9.15829 -8.95691 -8.73971 -8.52481 -8.23088 -7.94773 -6.07918 -4.07387 0.79984 1.23963 2.30960 2.64851 3.28700 3.40154 3.43488 3.59552 4.25374 4.39299 4.42127 4.57256 4.77375 5.00744 5.08632 5.13562 5.18220 5.23651 5.34693 5.43110 5.52597 5.57706 5.70061 5.75387 5.80603 5.96442 6.09413 6.11393 6.13226 6.23840 6.28139 6.28977 6.38986 6.44336 6.56472 6.57859 6.76152 6.81658 7.15024 7.16246 7.32338 7.44046 7.61521 7.82414 8.50164 8.94791 9.54874 11.05227 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.003556 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.603742 B = 7872.733770 C = 8023.353879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.071 3.929 3 Si 0.887 3.113 4 H -0.280 1.280 5 H -0.298 1.298 6 H -0.263 1.263 7 C -0.515 4.515 8 H 0.073 0.927 9 C 0.021 3.979 10 H 0.037 0.963 11 C -0.123 4.123 12 C -0.119 4.119 13 C 0.061 3.939 14 N -0.537 5.537 15 C 0.126 3.874 16 C 0.054 3.946 17 C -0.194 4.194 18 C -0.126 4.126 19 C -0.072 4.072 20 C -0.140 4.140 21 C -0.101 4.101 22 C -0.107 4.107 23 C 0.050 3.950 24 O -0.194 6.194 25 C 0.077 3.923 26 H 0.264 0.736 27 H 0.047 0.953 28 H 0.057 0.943 29 H 0.063 0.937 30 H 0.054 0.946 31 H 0.064 0.936 32 H 0.031 0.969 33 H 0.051 0.949 34 H 0.109 0.891 35 H 0.159 0.841 36 H 0.126 0.874 37 H 0.126 0.874 38 H 0.132 0.868 39 H 0.129 0.871 40 H 0.031 0.969 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.042 -8.333 0.710 23.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.130 4.130 3 Si 0.718 3.282 4 H -0.207 1.207 5 H -0.226 1.226 6 H -0.188 1.188 7 C -0.553 4.553 8 H 0.091 0.909 9 C 0.002 3.998 10 H 0.055 0.945 11 C -0.160 4.160 12 C -0.157 4.157 13 C -0.067 4.067 14 N -0.262 5.262 15 C -0.002 4.002 16 C 0.007 3.993 17 C -0.214 4.214 18 C -0.127 4.127 19 C -0.091 4.091 20 C -0.158 4.158 21 C -0.119 4.119 22 C -0.126 4.126 23 C 0.002 3.998 24 O -0.096 6.096 25 C -0.049 4.049 26 H 0.073 0.927 27 H 0.065 0.935 28 H 0.075 0.925 29 H 0.082 0.918 30 H 0.073 0.927 31 H 0.082 0.918 32 H 0.050 0.950 33 H 0.069 0.931 34 H 0.127 0.873 35 H 0.177 0.823 36 H 0.144 0.856 37 H 0.144 0.856 38 H 0.150 0.850 39 H 0.147 0.853 40 H 0.049 0.951 41 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 21.957 -7.970 0.822 23.373 hybrid contribution 0.113 0.566 -0.650 0.869 sum 22.070 -7.404 0.172 23.279 Atomic orbital electron populations 1.69894 1.06306 1.26976 1.50824 1.24973 0.94658 0.99047 0.94359 0.86837 0.80025 0.83475 0.77889 1.20709 1.22600 1.18803 1.20978 0.88663 0.94528 1.51148 0.90882 1.19160 0.95981 0.90850 0.93828 0.94533 1.22039 0.92549 1.00325 1.01127 1.21648 0.98092 0.94997 1.00915 1.22052 0.98801 0.95601 0.90200 1.62075 1.10777 1.14739 1.38648 1.20677 0.84375 0.92322 1.02826 1.22359 0.90988 1.00130 0.85863 1.22216 0.90804 1.09634 0.98763 1.20016 0.94169 1.05219 0.93318 1.20301 0.90689 0.98530 0.99538 1.20744 0.97176 1.02877 0.94999 1.20875 0.97650 0.99912 0.93425 1.19937 0.87480 1.04710 1.00439 1.19649 0.85217 1.02981 0.91925 1.83986 1.13232 1.76133 1.36211 1.22140 0.82460 1.00166 1.00136 0.92656 0.93474 0.92466 0.91831 0.92706 0.91753 0.95048 0.93064 0.87328 0.82346 0.85609 0.85563 0.85031 0.85267 0.95093 0.91058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.47 13.96 55.43 0.77 -26.70 16 2 C 0.07 2.04 5.45 -17.82 -0.10 1.94 16 3 Si 0.89 22.09 24.35 -169.99 -4.14 17.95 16 4 H -0.28 -6.81 6.89 56.52 0.39 -6.42 16 5 H -0.30 -7.46 7.11 56.52 0.40 -7.05 16 6 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 7 C -0.51 -14.19 9.15 -34.44 -0.31 -14.51 16 8 H 0.07 2.16 7.99 -52.49 -0.42 1.74 16 9 C 0.02 0.49 1.85 -91.69 -0.17 0.32 16 10 H 0.04 0.90 7.21 -51.93 -0.37 0.52 16 11 C -0.12 -2.66 4.73 -26.60 -0.13 -2.78 16 12 C -0.12 -2.16 6.09 -26.65 -0.16 -2.32 16 13 C 0.06 1.03 5.31 -3.83 -0.02 1.01 16 14 N -0.54 -9.17 4.65 -236.11 -1.10 -10.27 16 15 C 0.13 1.75 5.47 -4.97 -0.03 1.72 16 16 C 0.05 0.77 5.82 -35.80 -0.21 0.56 16 17 C -0.19 -2.60 11.01 -37.62 -0.41 -3.02 16 18 C -0.13 -1.67 6.40 -105.16 -0.67 -2.34 16 19 C -0.07 -0.78 10.05 -39.69 -0.40 -1.18 16 20 C -0.14 -1.27 9.98 -39.94 -0.40 -1.67 16 21 C -0.10 -0.90 10.01 -39.54 -0.40 -1.30 16 22 C -0.11 -1.17 10.07 -39.46 -0.40 -1.56 16 23 C 0.05 0.68 7.42 -38.47 -0.29 0.39 16 24 O -0.19 -2.87 9.76 3.89 0.04 -2.83 16 25 C 0.08 1.50 4.68 -3.84 -0.02 1.48 16 26 H 0.26 7.56 8.31 -40.82 -0.34 7.22 16 27 H 0.05 1.08 3.34 -51.93 -0.17 0.91 16 28 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 29 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.46 16 31 H 0.06 1.05 6.48 -51.93 -0.34 0.71 16 32 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.05 0.68 8.12 -51.93 -0.42 0.26 16 34 H 0.11 1.31 7.98 -51.93 -0.41 0.90 16 35 H 0.16 1.84 8.06 -52.49 -0.42 1.42 16 36 H 0.13 1.09 8.06 -52.48 -0.42 0.67 16 37 H 0.13 0.80 8.06 -52.48 -0.42 0.38 16 38 H 0.13 0.79 8.06 -52.49 -0.42 0.37 16 39 H 0.13 1.15 8.06 -52.49 -0.42 0.73 16 40 H 0.03 0.60 8.14 -51.92 -0.42 0.18 16 41 H 0.07 1.34 8.01 -51.93 -0.42 0.92 16 LS Contribution 325.17 15.07 4.90 4.90 Total: -1.00 -30.98 325.17 -9.60 -40.57 By element: Atomic # 1 Polarization: 5.58 SS G_CDS: -5.96 Total: -0.38 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: -4.11 Total: -23.24 kcal Atomic # 7 Polarization: -36.64 SS G_CDS: -0.32 Total: -36.97 kcal Atomic # 8 Polarization: -2.87 SS G_CDS: 0.04 Total: -2.83 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.14 Total: 17.95 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -30.98 -9.60 -40.57 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.342 kcal (2) G-P(sol) polarization free energy of solvation -30.978 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.364 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.573 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.769 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds