Wall clock time and date at job start Tue Mar 31 2020 06:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86807 * 120.00082 * 2 1 4 4 H 1.48501 * 109.47102 * 269.99975 * 3 2 1 5 5 H 1.48501 * 109.46838 * 29.99667 * 3 2 1 6 6 H 1.48499 * 109.47406 * 149.99623 * 3 2 1 7 7 C 1.37874 * 120.00513 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99727 * 0.02562 * 7 2 1 9 9 C 1.50699 * 120.00595 * 180.02562 * 7 2 1 10 10 H 1.08996 * 109.50473 * 60.07802 * 9 7 2 11 11 C 1.53127 * 109.50155 * 300.00274 * 9 7 2 12 12 C 1.53121 * 109.15951 * 182.40335 * 11 9 7 13 13 C 1.53039 * 109.27805 * 57.65287 * 12 11 9 14 14 N 1.46845 * 109.52354 * 300.82105 * 13 12 11 15 15 C 1.46903 * 110.99885 * 185.83788 * 14 13 12 16 16 C 1.50705 * 109.46991 * 66.04899 * 15 14 13 17 17 C 1.33990 * 124.92493 * 89.99354 * 16 15 14 18 18 C 1.46788 * 106.18385 * 179.75154 * 17 16 15 19 19 C 1.39404 * 134.37034 * 180.22985 * 18 17 16 20 20 C 1.36737 * 119.71628 * 180.02562 * 19 18 17 21 21 C 1.38734 * 120.41902 * 0.02562 * 20 19 18 22 22 C 1.37846 * 120.68618 * 359.97438 * 21 20 19 23 23 C 1.38948 * 119.81653 * 359.96385 * 22 21 20 24 24 O 1.34454 * 124.91766 * 270.14127 * 16 15 14 25 25 C 1.46847 * 111.20032 * 61.74126 * 14 13 12 26 26 H 0.96996 * 119.99924 * 0.02562 * 1 2 3 27 27 H 1.08991 * 109.51993 * 62.49817 * 11 9 7 28 28 H 1.09000 * 109.57284 * 302.33866 * 11 9 7 29 29 H 1.09001 * 109.50185 * 297.71659 * 12 11 9 30 30 H 1.08999 * 109.50259 * 177.59020 * 12 11 9 31 31 H 1.08995 * 109.46346 * 180.80393 * 13 12 11 32 32 H 1.09001 * 109.46042 * 60.83385 * 13 12 11 33 33 H 1.08995 * 109.47167 * 306.05120 * 15 14 13 34 34 H 1.08996 * 109.47037 * 186.04391 * 15 14 13 35 35 H 1.08002 * 126.91012 * 0.02562 * 17 16 15 36 36 H 1.08010 * 120.14450 * 359.97438 * 19 18 17 37 37 H 1.08003 * 119.78679 * 179.97438 * 20 19 18 38 38 H 1.08001 * 119.66064 * 179.97438 * 21 20 19 39 39 H 1.08001 * 120.09468 * 179.97438 * 22 21 20 40 40 H 1.09007 * 109.46135 * 58.27712 * 25 14 13 41 41 H 1.09002 * 109.46528 * 178.23941 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6178 0.0000 4 1 2.4967 2.0465 -1.4001 5 1 1.4465 2.6527 0.7000 6 1 3.5467 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 1.4646 -2.1293 0.0005 9 6 3.5116 -1.1940 0.0011 10 1 3.8752 -0.6813 0.8916 11 6 4.0233 -0.4725 -1.2489 12 6 5.5533 -0.5294 -1.2710 13 6 6.0050 -1.9912 -1.2386 14 7 5.4909 -2.6370 -0.0241 15 6 6.0188 -4.0012 0.1106 16 6 7.5075 -3.9436 0.3380 17 6 8.0978 -3.8718 1.5387 18 6 9.5430 -3.8430 1.2829 19 6 10.6753 -3.7779 2.0935 20 6 11.9178 -3.7673 1.5226 21 6 12.0576 -3.8204 0.1434 22 6 10.9496 -3.8850 -0.6741 23 6 9.6779 -3.8982 -0.1143 24 8 8.4356 -3.9539 -0.6348 25 6 4.0225 -2.6365 -0.0034 26 1 -0.4850 0.8400 -0.0004 27 1 3.6977 0.5674 -1.2280 28 1 3.6276 -0.9603 -2.1397 29 1 5.9495 -0.0067 -0.4004 30 1 5.9219 -0.0547 -2.1803 31 1 7.0941 -2.0349 -1.2399 32 1 5.6198 -2.5099 -2.1165 33 1 5.8119 -4.5624 -0.8006 34 1 5.5408 -4.4938 0.9572 35 1 7.6089 -3.8454 2.5013 36 1 10.5716 -3.7352 3.1677 37 1 12.7958 -3.7165 2.1495 38 1 13.0449 -3.8109 -0.2945 39 1 11.0695 -3.9256 -1.7466 40 1 3.6467 -3.1522 -0.8871 41 1 3.6717 -3.1488 0.8925 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595616106.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:55 Heat of formation + Delta-G solvation = 13.282940 kcal Electronic energy + Delta-G solvation = -22047.764432 eV Core-core repulsion = 18892.951993 eV Total energy + Delta-G solvation = -3154.812439 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.42936 -40.03476 -38.75292 -35.91052 -34.31847 -33.45576 -32.06119 -31.32325 -30.80447 -27.43115 -26.85964 -24.38621 -23.74088 -23.04021 -22.59272 -21.70255 -20.54769 -18.85763 -18.29338 -17.77020 -17.58406 -16.92574 -16.44921 -15.97550 -15.74028 -15.32395 -15.29155 -14.90659 -14.83219 -14.53513 -14.17101 -13.99550 -13.82871 -13.36633 -13.19318 -13.08900 -12.91631 -12.75084 -12.60804 -12.29338 -11.93232 -11.82891 -11.78859 -11.47472 -11.12073 -11.00289 -10.85750 -10.62489 -9.58045 -9.35289 -9.07705 -8.30135 -6.33234 -0.03758 0.42438 1.29987 1.34534 1.36526 1.47192 1.72322 2.32744 2.80002 3.02110 3.05975 3.39129 3.75179 3.93717 4.00640 4.08892 4.13701 4.17983 4.23566 4.31988 4.39565 4.43276 4.51377 4.58273 4.62362 4.71756 4.76162 4.81424 4.91646 4.97092 4.99002 5.09857 5.17798 5.27334 5.37248 5.41617 5.50774 5.53607 5.61309 5.70348 5.79582 6.05545 6.08703 6.24846 6.32764 6.74051 7.32624 8.86522 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032949 B = 0.003556 C = 0.003489 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.603742 B = 7872.733770 C = 8023.353879 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.949 5.949 2 C 0.015 3.985 3 Si 0.948 3.052 4 H -0.268 1.268 5 H -0.300 1.300 6 H -0.250 1.250 7 C -0.516 4.516 8 H 0.038 0.962 9 C 0.020 3.980 10 H 0.026 0.974 11 C -0.122 4.122 12 C -0.113 4.113 13 C 0.065 3.935 14 N -0.543 5.543 15 C 0.129 3.871 16 C 0.035 3.965 17 C -0.195 4.195 18 C -0.153 4.153 19 C -0.083 4.083 20 C -0.136 4.136 21 C -0.091 4.091 22 C -0.122 4.122 23 C 0.022 3.978 24 O -0.210 6.210 25 C 0.088 3.912 26 H 0.265 0.735 27 H 0.035 0.965 28 H 0.052 0.948 29 H 0.060 0.940 30 H 0.080 0.920 31 H 0.073 0.927 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.125 0.875 35 H 0.170 0.830 36 H 0.143 0.857 37 H 0.159 0.841 38 H 0.167 0.833 39 H 0.144 0.856 40 H 0.026 0.974 41 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 25.819 -8.141 0.812 27.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.590 5.590 2 C -0.182 4.182 3 Si 0.775 3.225 4 H -0.195 1.195 5 H -0.228 1.228 6 H -0.174 1.174 7 C -0.555 4.555 8 H 0.057 0.943 9 C 0.001 3.999 10 H 0.044 0.956 11 C -0.159 4.159 12 C -0.150 4.150 13 C -0.063 4.063 14 N -0.268 5.268 15 C 0.002 3.998 16 C -0.013 4.013 17 C -0.215 4.215 18 C -0.153 4.153 19 C -0.101 4.101 20 C -0.154 4.154 21 C -0.108 4.108 22 C -0.140 4.140 23 C -0.025 4.025 24 O -0.113 6.113 25 C -0.039 4.039 26 H 0.074 0.926 27 H 0.053 0.947 28 H 0.070 0.930 29 H 0.078 0.922 30 H 0.098 0.902 31 H 0.092 0.908 32 H 0.053 0.947 33 H 0.075 0.925 34 H 0.142 0.858 35 H 0.187 0.813 36 H 0.161 0.839 37 H 0.177 0.823 38 H 0.185 0.815 39 H 0.162 0.838 40 H 0.044 0.956 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 25.762 -7.797 0.922 26.932 hybrid contribution -0.955 0.397 -0.643 1.218 sum 24.808 -7.400 0.279 25.889 Atomic orbital electron populations 1.70034 1.08097 1.27962 1.52895 1.25790 0.95337 1.02781 0.94300 0.85852 0.79070 0.79008 0.78540 1.19456 1.22756 1.17403 1.21305 0.91232 0.93124 1.49799 0.94344 1.19072 0.93033 0.93538 0.94255 0.95607 1.21932 0.95236 0.99037 0.99730 1.21604 0.95171 0.96179 1.02077 1.22019 0.99236 0.94764 0.90232 1.61981 1.08876 1.16993 1.38923 1.20695 0.84663 0.90559 1.03846 1.22277 0.90851 1.01944 0.86181 1.22486 0.91448 1.08526 0.99013 1.20288 0.94636 1.06656 0.93757 1.20646 0.90691 0.98375 1.00426 1.21203 0.97626 1.00950 0.95580 1.21373 0.98571 0.97463 0.93424 1.20332 0.87014 1.04963 1.01710 1.20155 0.85531 1.04234 0.92568 1.83928 1.13903 1.76762 1.36696 1.21843 0.84337 0.97575 1.00098 0.92572 0.94657 0.92967 0.92158 0.90180 0.90824 0.94737 0.92454 0.85753 0.81259 0.83944 0.82314 0.81539 0.83833 0.95598 0.90829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.95 -59.56 13.96 21.45 0.30 -59.26 16 2 C 0.01 0.87 5.45 84.65 0.46 1.34 16 3 Si 0.95 45.82 24.35 68.60 1.67 47.49 16 4 H -0.27 -12.38 6.89 99.48 0.69 -11.69 16 5 H -0.30 -14.44 7.11 99.48 0.71 -13.74 16 6 H -0.25 -11.43 6.53 99.48 0.65 -10.78 16 7 C -0.52 -29.22 9.15 25.60 0.23 -28.99 16 8 H 0.04 2.37 7.99 -2.91 -0.02 2.35 16 9 C 0.02 0.94 1.85 -11.49 -0.02 0.92 16 10 H 0.03 1.25 7.21 -2.39 -0.02 1.24 16 11 C -0.12 -5.14 4.73 30.68 0.15 -4.99 16 12 C -0.11 -3.86 6.09 30.65 0.19 -3.67 16 13 C 0.07 2.09 5.31 86.33 0.46 2.55 16 14 N -0.54 -17.94 4.65 -900.93 -4.19 -22.13 16 15 C 0.13 3.48 5.47 85.56 0.47 3.95 16 16 C 0.03 0.96 5.82 24.72 0.14 1.10 16 17 C -0.19 -5.05 11.01 23.54 0.26 -4.79 16 18 C -0.15 -3.83 6.40 -20.21 -0.13 -3.96 16 19 C -0.08 -1.59 10.05 22.20 0.22 -1.37 16 20 C -0.14 -1.97 9.98 22.04 0.22 -1.75 16 21 C -0.09 -1.30 10.01 22.30 0.22 -1.08 16 22 C -0.12 -2.39 10.07 22.35 0.23 -2.16 16 23 C 0.02 0.58 7.42 22.99 0.17 0.75 16 24 O -0.21 -6.10 9.76 -9.00 -0.09 -6.18 16 25 C 0.09 3.42 4.68 86.32 0.40 3.82 16 26 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 27 H 0.04 1.56 3.34 -2.39 -0.01 1.56 16 28 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.06 2.12 8.14 -2.39 -0.02 2.10 16 30 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 31 H 0.07 2.27 6.48 -2.39 -0.02 2.26 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.47 8.12 -2.39 -0.02 1.45 16 34 H 0.12 2.88 7.98 -2.39 -0.02 2.86 16 35 H 0.17 3.77 8.06 -2.91 -0.02 3.75 16 36 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 37 H 0.16 1.24 8.06 -2.91 -0.02 1.22 16 38 H 0.17 1.18 8.06 -2.91 -0.02 1.15 16 39 H 0.14 2.25 8.06 -2.91 -0.02 2.23 16 40 H 0.03 1.02 8.14 -2.38 -0.02 1.00 16 41 H 0.07 2.77 8.01 -2.39 -0.02 2.75 16 Total: -1.00 -68.48 325.17 2.30 -66.17 By element: Atomic # 1 Polarization: 11.31 SS G_CDS: 0.94 Total: 12.25 kcal Atomic # 6 Polarization: -42.01 SS G_CDS: 3.67 Total: -38.34 kcal Atomic # 7 Polarization: -77.50 SS G_CDS: -3.89 Total: -81.39 kcal Atomic # 8 Polarization: -6.10 SS G_CDS: -0.09 Total: -6.18 kcal Atomic # 14 Polarization: 45.82 SS G_CDS: 1.67 Total: 47.49 kcal Total: -68.48 2.30 -66.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595616106.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 79.456 kcal (2) G-P(sol) polarization free energy of solvation -68.477 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.979 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.173 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.283 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds