Wall clock time and date at job start Tue Mar 31 2020 06:24:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99552 * 2 1 4 4 H 1.48504 * 109.46773 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47152 * 299.99749 * 3 2 1 6 6 H 1.48500 * 109.47410 * 60.00327 * 3 2 1 7 7 C 1.37873 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00314 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47637 * 184.82812 * 9 7 2 11 11 C 1.46874 * 111.00066 * 64.55460 * 10 9 7 12 12 C 1.53074 * 109.54701 * 174.23262 * 11 10 9 13 13 C 1.53111 * 109.24343 * 59.12573 * 12 11 10 14 14 C 1.50719 * 109.55769 * 182.74432 * 13 12 11 15 15 C 1.33251 * 119.67108 * 207.18058 * 14 13 12 16 16 C 1.47911 * 117.81197 * 359.40404 * 15 14 13 17 17 C 1.38979 * 121.59568 * 198.97542 * 16 15 14 18 18 C 1.38156 * 119.43377 * 180.33531 * 17 16 15 19 19 C 1.38450 * 120.40569 * 0.09238 * 18 17 16 20 20 C 1.38359 * 120.47047 * 359.78555 * 19 18 17 21 21 C 1.38157 * 119.79955 * 359.87228 * 20 19 18 22 22 O 1.35875 * 121.50351 * 181.35385 * 21 20 19 23 23 C 1.53155 * 109.16149 * 302.26052 * 13 12 11 24 24 C 1.46791 * 110.99897 * 300.28239 * 10 9 7 25 25 H 0.97000 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46964 * 64.82542 * 9 7 2 27 27 H 1.09002 * 109.46847 * 304.83088 * 9 7 2 28 28 H 1.09002 * 109.45349 * 54.20994 * 11 10 9 29 29 H 1.09000 * 109.44338 * 294.24765 * 11 10 9 30 30 H 1.09005 * 109.51071 * 299.19635 * 12 11 10 31 31 H 1.08997 * 109.51172 * 179.05572 * 12 11 10 32 32 H 1.07996 * 120.16435 * 26.98791 * 14 13 12 33 33 H 1.08004 * 121.09444 * 179.66892 * 15 14 13 34 34 H 1.07995 * 120.27983 * 0.31316 * 17 16 15 35 35 H 1.08002 * 119.79806 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.76439 * 179.76312 * 19 18 17 37 37 H 1.08002 * 120.10168 * 179.89270 * 20 19 18 38 38 H 1.09000 * 109.50961 * 177.68947 * 23 13 12 39 39 H 1.08994 * 109.51767 * 297.84593 * 23 13 12 40 40 H 1.09004 * 109.45604 * 305.83599 * 24 10 9 41 41 H 1.08993 * 109.46375 * 65.79393 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2015 -3.6131 0.1177 11 6 2.8984 -3.5768 1.4101 12 6 3.7706 -4.8261 1.5569 13 6 4.7833 -4.8723 0.4095 14 6 5.6013 -6.1343 0.5090 15 6 6.8370 -6.1604 0.0110 16 6 7.3460 -4.9320 -0.6370 17 6 8.4281 -4.9633 -1.5084 18 6 8.8710 -3.7878 -2.0835 19 6 8.2452 -2.5871 -1.7944 20 6 7.1657 -2.5489 -0.9297 21 6 6.7068 -3.7171 -0.3523 22 8 5.6330 -3.7235 0.4802 23 6 4.0318 -4.8636 -0.9250 24 6 3.1530 -3.6126 -1.0000 25 1 -0.4850 0.8400 0.0004 26 1 0.6913 -2.5954 -0.9297 27 1 0.5609 -2.5201 0.8438 28 1 2.1660 -3.5483 2.2168 29 1 3.5268 -2.6875 1.4585 30 1 3.1413 -5.7155 1.5230 31 1 4.3004 -4.7904 2.5088 32 1 5.1892 -7.0120 0.9844 33 1 7.4452 -7.0506 0.0744 34 1 8.9189 -5.8986 -1.7338 35 1 9.7112 -3.8054 -2.7619 36 1 8.6024 -1.6738 -2.2468 37 1 6.6831 -1.6087 -0.7071 38 1 4.7483 -4.8549 -1.7463 39 1 3.4059 -5.7530 -0.9962 40 1 2.6058 -3.6094 -1.9427 41 1 3.7810 -2.7237 -0.9419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000595877003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:12 Heat of formation + Delta-G solvation = 7.781940 kcal Electronic energy + Delta-G solvation = -23031.258458 eV Core-core repulsion = 19876.207478 eV Total energy + Delta-G solvation = -3155.050980 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -40.97501 -38.33981 -36.54669 -34.31465 -33.01143 -31.60550 -30.43839 -30.18573 -28.85302 -26.36141 -24.01798 -23.12728 -22.79933 -22.24756 -21.51086 -19.48234 -18.69737 -17.44009 -16.67280 -15.82479 -15.53368 -15.08981 -14.78199 -14.58195 -14.21813 -14.17591 -13.72927 -13.56716 -13.18169 -12.89567 -12.70996 -12.45029 -12.00526 -11.78430 -11.71357 -11.41240 -11.29744 -11.08060 -10.84298 -10.71589 -10.58387 -10.43465 -10.17374 -9.99625 -9.79266 -9.72673 -9.41547 -8.61032 -8.40208 -7.84334 -7.12275 -5.99324 -4.07805 0.87489 1.41725 2.33495 3.28435 3.36571 3.40944 3.48445 3.92322 4.43832 4.61078 4.70717 4.74072 4.95770 5.04079 5.09115 5.12675 5.25926 5.31088 5.39152 5.48895 5.70193 5.73851 5.92841 5.97225 6.00805 6.09493 6.11720 6.15998 6.18414 6.27056 6.44414 6.50192 6.51625 6.64419 6.65465 6.83036 6.86191 6.97224 7.32131 7.56571 7.61850 7.93697 8.10121 8.32078 8.35617 9.03380 9.59044 11.05679 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.005718 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.315714 B = 4896.049835 C = 6011.830819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.064 3.936 3 Si 0.886 3.114 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.545 4.545 8 H 0.059 0.941 9 C 0.187 3.813 10 N -0.541 5.541 11 C 0.064 3.936 12 C -0.098 4.098 13 C 0.152 3.848 14 C -0.172 4.172 15 C -0.108 4.108 16 C -0.133 4.133 17 C -0.079 4.079 18 C -0.156 4.156 19 C -0.086 4.086 20 C -0.143 4.143 21 C 0.139 3.861 22 O -0.295 6.295 23 C -0.132 4.132 24 C 0.068 3.932 25 H 0.261 0.739 26 H 0.028 0.972 27 H 0.034 0.966 28 H 0.067 0.933 29 H 0.047 0.953 30 H 0.085 0.915 31 H 0.068 0.932 32 H 0.130 0.870 33 H 0.128 0.872 34 H 0.124 0.876 35 H 0.122 0.878 36 H 0.127 0.873 37 H 0.133 0.867 38 H 0.060 0.940 39 H 0.079 0.921 40 H 0.065 0.935 41 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 15.083 -11.661 -1.444 19.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.138 4.138 3 Si 0.714 3.286 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.585 4.585 8 H 0.077 0.923 9 C 0.061 3.939 10 N -0.265 5.265 11 C -0.065 4.065 12 C -0.135 4.135 13 C 0.115 3.885 14 C -0.190 4.190 15 C -0.126 4.126 16 C -0.134 4.134 17 C -0.097 4.097 18 C -0.174 4.174 19 C -0.104 4.104 20 C -0.162 4.162 21 C 0.093 3.907 22 O -0.209 6.209 23 C -0.170 4.170 24 C -0.061 4.061 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.052 0.948 28 H 0.086 0.914 29 H 0.066 0.934 30 H 0.104 0.896 31 H 0.086 0.914 32 H 0.148 0.852 33 H 0.146 0.854 34 H 0.142 0.858 35 H 0.140 0.860 36 H 0.145 0.855 37 H 0.151 0.849 38 H 0.078 0.922 39 H 0.098 0.902 40 H 0.083 0.917 41 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 14.565 -11.835 -1.321 18.813 hybrid contribution 0.994 1.574 -0.067 1.863 sum 15.558 -10.261 -1.388 18.689 Atomic orbital electron populations 1.69954 1.05991 1.26621 1.50568 1.24954 0.94729 0.99085 0.95020 0.86625 0.80268 0.84075 0.77612 1.19788 1.20996 1.20978 1.21827 0.93512 0.92025 1.51100 0.92258 1.19739 0.90822 0.85548 0.97765 1.62464 1.16798 1.46696 1.00589 1.21819 0.96137 0.95362 0.93154 1.21711 0.95300 1.00988 0.95525 1.20856 0.88086 0.81589 0.97986 1.24090 0.95921 0.98952 1.00015 1.21749 0.96094 0.96101 0.98683 1.19185 0.98756 0.93467 1.01984 1.20911 0.94929 0.98246 0.95630 1.21003 1.01503 0.92507 1.02373 1.21064 0.94593 0.98128 0.96652 1.20670 0.99494 0.97815 0.98208 1.19029 0.87960 0.93233 0.90453 1.86298 1.35015 1.42658 1.56939 1.22225 0.98661 1.00993 0.95115 1.21752 0.93954 0.95091 0.95268 0.92947 0.95436 0.94780 0.91420 0.93433 0.89645 0.91360 0.85237 0.85370 0.85810 0.86039 0.85540 0.84896 0.92181 0.90240 0.91656 0.93721 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.83 5.46 -17.82 -0.10 1.73 16 3 Si 0.89 21.73 29.54 -169.99 -5.02 16.71 16 4 H -0.27 -6.63 7.11 56.52 0.40 -6.23 16 5 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 6 H -0.28 -6.90 7.11 56.52 0.40 -6.50 16 7 C -0.55 -15.15 7.73 -34.44 -0.27 -15.42 16 8 H 0.06 1.67 5.86 -52.48 -0.31 1.36 16 9 C 0.19 4.85 5.12 -4.98 -0.03 4.82 16 10 N -0.54 -11.69 4.86 -236.11 -1.15 -12.84 16 11 C 0.06 1.27 4.98 -3.80 -0.02 1.25 16 12 C -0.10 -1.53 5.09 -26.64 -0.14 -1.66 16 13 C 0.15 2.40 0.68 -91.63 -0.06 2.34 16 14 C -0.17 -2.21 8.79 -36.04 -0.32 -2.53 16 15 C -0.11 -1.34 10.10 -37.36 -0.38 -1.71 16 16 C -0.13 -1.85 5.55 -104.93 -0.58 -2.44 16 17 C -0.08 -0.92 9.86 -39.34 -0.39 -1.31 16 18 C -0.16 -1.73 10.03 -39.53 -0.40 -2.13 16 19 C -0.09 -1.06 10.03 -39.46 -0.40 -1.46 16 20 C -0.14 -2.17 10.02 -39.57 -0.40 -2.57 16 21 C 0.14 2.24 5.65 -38.88 -0.22 2.03 16 22 O -0.29 -5.28 8.65 -19.35 -0.17 -5.45 16 23 C -0.13 -2.17 4.78 -26.62 -0.13 -2.30 16 24 C 0.07 1.37 4.90 -3.85 -0.02 1.35 16 25 H 0.26 7.31 8.31 -40.82 -0.34 6.97 16 26 H 0.03 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.03 0.95 8.09 -51.93 -0.42 0.53 16 28 H 0.07 1.33 8.08 -51.93 -0.42 0.91 16 29 H 0.05 1.07 6.63 -51.93 -0.34 0.72 16 30 H 0.09 1.20 8.14 -51.93 -0.42 0.78 16 31 H 0.07 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.13 1.35 8.06 -52.49 -0.42 0.92 16 33 H 0.13 1.21 8.06 -52.48 -0.42 0.78 16 34 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 35 H 0.12 1.02 8.06 -52.49 -0.42 0.60 16 36 H 0.13 1.25 8.06 -52.49 -0.42 0.82 16 37 H 0.13 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.06 0.97 7.43 -51.93 -0.39 0.59 16 39 H 0.08 1.22 8.14 -51.93 -0.42 0.80 16 40 H 0.06 1.33 8.12 -51.93 -0.42 0.91 16 41 H 0.04 1.01 6.16 -51.93 -0.32 0.69 16 LS Contribution 326.00 15.07 4.91 4.91 Total: -1.00 -30.49 326.00 -10.49 -40.98 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: -5.98 Total: 1.38 kcal Atomic # 6 Polarization: -16.18 SS G_CDS: -3.82 Total: -20.00 kcal Atomic # 7 Polarization: -38.13 SS G_CDS: -0.41 Total: -38.54 kcal Atomic # 8 Polarization: -5.28 SS G_CDS: -0.17 Total: -5.45 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 4.91 Total: 4.91 kcal Total: -30.49 -10.49 -40.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595877003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.763 kcal (2) G-P(sol) polarization free energy of solvation -30.489 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.273 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.491 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds