Wall clock time and date at job start Tue Mar 31 2020 06:24:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99552 * 2 1 4 4 H 1.48504 * 109.46773 * 179.97438 * 3 2 1 5 5 H 1.48495 * 109.47152 * 299.99749 * 3 2 1 6 6 H 1.48500 * 109.47410 * 60.00327 * 3 2 1 7 7 C 1.37873 * 120.00230 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99927 * 180.02562 * 7 2 1 9 9 C 1.50696 * 120.00314 * 0.02562 * 7 2 1 10 10 N 1.46891 * 109.47637 * 184.82812 * 9 7 2 11 11 C 1.46874 * 111.00066 * 64.55460 * 10 9 7 12 12 C 1.53074 * 109.54701 * 174.23262 * 11 10 9 13 13 C 1.53111 * 109.24343 * 59.12573 * 12 11 10 14 14 C 1.50719 * 109.55769 * 182.74432 * 13 12 11 15 15 C 1.33251 * 119.67108 * 207.18058 * 14 13 12 16 16 C 1.47911 * 117.81197 * 359.40404 * 15 14 13 17 17 C 1.38979 * 121.59568 * 198.97542 * 16 15 14 18 18 C 1.38156 * 119.43377 * 180.33531 * 17 16 15 19 19 C 1.38450 * 120.40569 * 0.09238 * 18 17 16 20 20 C 1.38359 * 120.47047 * 359.78555 * 19 18 17 21 21 C 1.38157 * 119.79955 * 359.87228 * 20 19 18 22 22 O 1.35875 * 121.50351 * 181.35385 * 21 20 19 23 23 C 1.53155 * 109.16149 * 302.26052 * 13 12 11 24 24 C 1.46791 * 110.99897 * 300.28239 * 10 9 7 25 25 H 0.97000 * 120.00178 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.46964 * 64.82542 * 9 7 2 27 27 H 1.09002 * 109.46847 * 304.83088 * 9 7 2 28 28 H 1.09002 * 109.45349 * 54.20994 * 11 10 9 29 29 H 1.09000 * 109.44338 * 294.24765 * 11 10 9 30 30 H 1.09005 * 109.51071 * 299.19635 * 12 11 10 31 31 H 1.08997 * 109.51172 * 179.05572 * 12 11 10 32 32 H 1.07996 * 120.16435 * 26.98791 * 14 13 12 33 33 H 1.08004 * 121.09444 * 179.66892 * 15 14 13 34 34 H 1.07995 * 120.27983 * 0.31316 * 17 16 15 35 35 H 1.08002 * 119.79806 * 180.02562 * 18 17 16 36 36 H 1.08000 * 119.76439 * 179.76312 * 19 18 17 37 37 H 1.08002 * 120.10168 * 179.89270 * 20 19 18 38 38 H 1.09000 * 109.50961 * 177.68947 * 23 13 12 39 39 H 1.08994 * 109.51767 * 297.84593 * 23 13 12 40 40 H 1.09004 * 109.45604 * 305.83599 * 24 10 9 41 41 H 1.08993 * 109.46375 * 65.79393 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8903 2.3965 -1.2125 6 1 1.8903 2.3965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0010 9 6 1.2512 -2.4991 0.0005 10 7 2.2015 -3.6131 0.1177 11 6 2.8984 -3.5768 1.4101 12 6 3.7706 -4.8261 1.5569 13 6 4.7833 -4.8723 0.4095 14 6 5.6013 -6.1343 0.5090 15 6 6.8370 -6.1604 0.0110 16 6 7.3460 -4.9320 -0.6370 17 6 8.4281 -4.9633 -1.5084 18 6 8.8710 -3.7878 -2.0835 19 6 8.2452 -2.5871 -1.7944 20 6 7.1657 -2.5489 -0.9297 21 6 6.7068 -3.7171 -0.3523 22 8 5.6330 -3.7235 0.4802 23 6 4.0318 -4.8636 -0.9250 24 6 3.1530 -3.6126 -1.0000 25 1 -0.4850 0.8400 0.0004 26 1 0.6913 -2.5954 -0.9297 27 1 0.5609 -2.5201 0.8438 28 1 2.1660 -3.5483 2.2168 29 1 3.5268 -2.6875 1.4585 30 1 3.1413 -5.7155 1.5230 31 1 4.3004 -4.7904 2.5088 32 1 5.1892 -7.0120 0.9844 33 1 7.4452 -7.0506 0.0744 34 1 8.9189 -5.8986 -1.7338 35 1 9.7112 -3.8054 -2.7619 36 1 8.6024 -1.6738 -2.2468 37 1 6.6831 -1.6087 -0.7071 38 1 4.7483 -4.8549 -1.7463 39 1 3.4059 -5.7530 -0.9962 40 1 2.6058 -3.6094 -1.9427 41 1 3.7810 -2.7237 -0.9419 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000595877003.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:11 Heat of formation + Delta-G solvation = -10.342553 kcal Electronic energy + Delta-G solvation = -23032.044395 eV Core-core repulsion = 19876.207478 eV Total energy + Delta-G solvation = -3155.836917 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.12132 -39.62305 -37.95978 -35.51564 -34.81335 -33.19019 -31.86134 -31.24987 -30.12458 -28.22195 -25.71095 -24.25125 -24.14917 -23.34182 -23.21393 -21.03627 -19.68757 -18.81527 -18.32620 -17.30058 -16.88922 -16.66974 -16.01797 -15.86447 -15.72893 -15.53785 -15.25509 -14.74298 -14.48908 -14.29767 -14.04873 -13.85062 -13.49400 -13.25901 -13.10873 -12.99221 -12.70576 -12.58798 -12.50880 -12.28592 -12.18154 -12.06659 -11.76804 -11.61555 -11.47004 -11.08773 -10.86453 -10.63867 -9.60576 -9.06330 -8.87515 -8.18635 -6.37532 -0.09471 0.40812 1.30298 1.31626 1.39821 1.43850 2.33564 2.41333 2.90562 3.05454 3.34154 3.57133 3.67527 3.78201 3.80994 3.88754 4.16621 4.28892 4.34854 4.40000 4.50994 4.53539 4.60803 4.62306 4.70145 4.80777 4.89977 4.96669 4.99575 5.06821 5.16061 5.22819 5.25597 5.29774 5.31471 5.32885 5.48960 5.56343 5.70356 5.71670 5.95021 6.03514 6.22864 6.49540 6.51364 6.83139 7.33469 8.83761 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017964 B = 0.005718 C = 0.004656 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1558.315714 B = 4896.049835 C = 6011.830819 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.924 5.924 2 C 0.014 3.986 3 Si 0.952 3.048 4 H -0.274 1.274 5 H -0.274 1.274 6 H -0.274 1.274 7 C -0.553 4.553 8 H 0.048 0.952 9 C 0.199 3.801 10 N -0.533 5.533 11 C 0.065 3.935 12 C -0.088 4.088 13 C 0.146 3.854 14 C -0.180 4.180 15 C -0.101 4.101 16 C -0.148 4.148 17 C -0.073 4.073 18 C -0.149 4.149 19 C -0.088 4.088 20 C -0.174 4.174 21 C 0.105 3.895 22 O -0.327 6.327 23 C -0.119 4.119 24 C 0.073 3.927 25 H 0.266 0.734 26 H 0.004 0.996 27 H 0.011 0.989 28 H 0.063 0.937 29 H 0.013 0.987 30 H 0.110 0.890 31 H 0.084 0.916 32 H 0.161 0.839 33 H 0.166 0.834 34 H 0.161 0.839 35 H 0.158 0.842 36 H 0.147 0.853 37 H 0.108 0.892 38 H 0.062 0.938 39 H 0.097 0.903 40 H 0.055 0.945 41 H 0.011 0.989 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.836 -13.801 -1.927 22.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.564 5.564 2 C -0.185 4.185 3 Si 0.777 3.223 4 H -0.199 1.199 5 H -0.199 1.199 6 H -0.200 1.200 7 C -0.592 4.592 8 H 0.066 0.934 9 C 0.072 3.928 10 N -0.256 5.256 11 C -0.063 4.063 12 C -0.126 4.126 13 C 0.109 3.891 14 C -0.198 4.198 15 C -0.118 4.118 16 C -0.148 4.148 17 C -0.091 4.091 18 C -0.167 4.167 19 C -0.106 4.106 20 C -0.193 4.193 21 C 0.060 3.940 22 O -0.243 6.243 23 C -0.157 4.157 24 C -0.056 4.056 25 H 0.075 0.925 26 H 0.022 0.978 27 H 0.030 0.970 28 H 0.082 0.918 29 H 0.031 0.969 30 H 0.128 0.872 31 H 0.102 0.898 32 H 0.179 0.821 33 H 0.184 0.816 34 H 0.178 0.822 35 H 0.175 0.825 36 H 0.165 0.835 37 H 0.126 0.874 38 H 0.080 0.920 39 H 0.116 0.884 40 H 0.073 0.927 41 H 0.030 0.970 Dipole moment (debyes) X Y Z Total from point charges 17.329 -13.986 -1.805 22.342 hybrid contribution 0.193 2.277 0.029 2.285 sum 17.522 -11.709 -1.776 21.149 Atomic orbital electron populations 1.70055 1.07328 1.27783 1.51212 1.25750 0.95611 1.02574 0.94570 0.85596 0.78709 0.79795 0.78156 1.19896 1.19921 1.19987 1.21968 0.93059 0.93189 1.51031 0.93353 1.19420 0.91231 0.86702 0.95443 1.62424 1.17017 1.44145 1.02056 1.21830 0.95935 0.96666 0.91883 1.21677 0.95000 0.99196 0.96688 1.20916 0.88435 0.83010 0.96759 1.24101 0.96089 0.98163 1.01401 1.22135 0.96090 0.96398 0.97222 1.19512 0.99405 0.93202 1.02711 1.21392 0.93756 0.99924 0.94013 1.21456 1.01691 0.91619 1.01896 1.21361 0.93583 0.99998 0.95643 1.20760 1.01265 0.97052 1.00218 1.19344 0.88412 0.94684 0.91572 1.86250 1.36045 1.44095 1.57891 1.22104 0.98140 0.99053 0.96396 1.21699 0.93447 0.96235 0.94201 0.92525 0.97754 0.97046 0.91827 0.96910 0.87162 0.89756 0.82139 0.81642 0.82188 0.82460 0.83503 0.87375 0.91955 0.88432 0.92686 0.97037 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -56.33 13.29 21.45 0.28 -56.04 16 2 C 0.01 0.84 5.46 84.65 0.46 1.30 16 3 Si 0.95 45.96 29.54 68.60 2.03 47.98 16 4 H -0.27 -13.16 7.11 99.48 0.71 -12.45 16 5 H -0.27 -12.73 7.11 99.48 0.71 -12.03 16 6 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 7 C -0.55 -32.38 7.73 25.60 0.20 -32.18 16 8 H 0.05 2.90 5.86 -2.91 -0.02 2.88 16 9 C 0.20 10.94 5.12 85.56 0.44 11.38 16 10 N -0.53 -24.05 4.86 -900.92 -4.37 -28.43 16 11 C 0.07 2.69 4.98 86.33 0.43 3.12 16 12 C -0.09 -2.69 5.09 30.66 0.16 -2.53 16 13 C 0.15 4.48 0.68 -11.44 -0.01 4.47 16 14 C -0.18 -4.05 8.79 24.57 0.22 -3.84 16 15 C -0.10 -2.10 10.10 23.71 0.24 -1.86 16 16 C -0.15 -3.77 5.55 -20.06 -0.11 -3.88 16 17 C -0.07 -1.42 9.86 22.43 0.22 -1.20 16 18 C -0.15 -2.81 10.03 22.30 0.22 -2.58 16 19 C -0.09 -2.07 10.03 22.35 0.22 -1.85 16 20 C -0.17 -5.51 10.02 22.28 0.22 -5.28 16 21 C 0.10 3.42 5.65 22.73 0.13 3.55 16 22 O -0.33 -12.09 8.65 -92.15 -0.80 -12.89 16 23 C -0.12 -3.88 4.78 30.67 0.15 -3.74 16 24 C 0.07 3.08 4.90 86.34 0.42 3.51 16 25 H 0.27 15.17 8.31 -92.71 -0.77 14.40 16 26 H 0.00 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.01 0.67 8.09 -2.39 -0.02 0.65 16 28 H 0.06 2.61 8.08 -2.39 -0.02 2.59 16 29 H 0.01 0.60 6.63 -2.39 -0.02 0.59 16 30 H 0.11 2.82 8.14 -2.38 -0.02 2.80 16 31 H 0.08 2.31 8.14 -2.39 -0.02 2.29 16 32 H 0.16 2.58 8.06 -2.91 -0.02 2.55 16 33 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 34 H 0.16 1.93 8.06 -2.91 -0.02 1.91 16 35 H 0.16 1.85 8.06 -2.91 -0.02 1.82 16 36 H 0.15 2.70 8.06 -2.91 -0.02 2.67 16 37 H 0.11 3.76 8.06 -2.91 -0.02 3.74 16 38 H 0.06 2.00 7.43 -2.39 -0.02 1.98 16 39 H 0.10 2.82 8.14 -2.39 -0.02 2.80 16 40 H 0.05 2.37 8.12 -2.39 -0.02 2.35 16 41 H 0.01 0.56 6.16 -2.39 -0.01 0.54 16 Total: -1.00 -70.36 326.00 1.76 -68.60 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 1.01 Total: 12.40 kcal Atomic # 6 Polarization: -35.23 SS G_CDS: 3.61 Total: -31.62 kcal Atomic # 7 Polarization: -80.38 SS G_CDS: -4.09 Total: -84.47 kcal Atomic # 8 Polarization: -12.09 SS G_CDS: -0.80 Total: -12.89 kcal Atomic # 14 Polarization: 45.96 SS G_CDS: 2.03 Total: 47.98 kcal Total: -70.36 1.76 -68.60 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000595877003.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.258 kcal (2) G-P(sol) polarization free energy of solvation -70.358 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.101 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.758 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds