Wall clock time and date at job start Tue Mar 31 2020 05:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86802 * 119.99706 * 2 1 4 4 H 1.48498 * 109.46997 * 0.02562 * 3 2 1 5 5 H 1.48503 * 109.47393 * 120.00303 * 3 2 1 6 6 H 1.48510 * 109.46930 * 240.00256 * 3 2 1 7 7 C 1.37874 * 120.00562 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00617 * 191.10604 * 7 2 1 9 9 C 1.50700 * 119.99737 * 11.09539 * 7 2 1 10 10 C 1.52996 * 115.54898 * 39.41379 * 9 7 2 11 11 N 1.46500 * 109.47385 * 57.10487 * 10 9 7 12 12 C 1.37398 * 125.96847 * 262.14414 * 11 10 9 13 13 N 1.29268 * 109.29139 * 179.84828 * 12 11 10 14 14 N 1.40127 * 108.66757 * 0.40961 * 13 12 11 15 15 H 0.97005 * 126.41469 * 179.77224 * 14 13 12 16 16 C 1.36584 * 107.16847 * 359.74174 * 14 13 12 17 17 N 1.32018 * 126.59312 * 180.02562 * 16 14 13 18 18 C 1.36756 * 120.00316 * 5.04781 * 17 16 14 19 19 C 1.40128 * 120.57654 * 94.37479 * 18 17 16 20 20 C 1.38315 * 118.27995 * 180.02562 * 19 18 17 21 21 C 1.38368 * 119.32450 * 0.02562 * 20 19 18 22 22 N 1.31900 * 121.12312 * 0.02562 * 21 20 19 23 23 C 1.31698 * 121.88605 * 359.65269 * 22 21 20 24 24 C 1.53004 * 117.50115 * 253.70154 * 9 7 2 25 25 C 1.53004 * 117.49914 * 185.07842 * 9 7 2 26 26 H 0.97004 * 120.00661 * 354.95984 * 1 2 3 27 27 H 1.09000 * 109.47279 * 177.10670 * 10 9 7 28 28 H 1.09000 * 109.47452 * 297.10180 * 10 9 7 29 29 H 1.07998 * 125.35570 * 0.02562 * 12 11 10 30 30 H 1.07994 * 120.85617 * 359.97438 * 19 18 17 31 31 H 1.08000 * 120.33289 * 180.02562 * 20 19 18 32 32 H 1.08005 * 119.43512 * 180.02562 * 21 20 19 33 33 H 1.08000 * 119.73142 * 180.33752 * 23 22 21 34 34 H 1.08996 * 117.49396 * 0.02562 * 24 9 7 35 35 H 1.09000 * 117.49571 * 145.01999 * 24 9 7 36 36 H 1.08993 * 117.49942 * 214.98131 * 25 9 7 37 37 H 1.08995 * 117.49822 * 0.02562 * 25 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 1.2839 2.7464 0.0006 5 1 3.1028 1.6965 1.2125 6 1 3.1027 1.6965 -1.2126 7 6 2.0046 -1.1940 -0.0005 8 1 3.0694 -1.2028 0.1796 9 6 1.2722 -2.4868 -0.2523 10 6 0.1827 -2.4299 -1.3249 11 7 0.7646 -1.9702 -2.5883 12 6 0.7294 -0.6848 -3.0725 13 7 1.3427 -0.6399 -4.2095 14 7 1.8039 -1.9258 -4.5215 15 1 2.2949 -2.1841 -5.3172 16 6 1.4332 -2.7471 -3.4951 17 7 1.6740 -4.0414 -3.3966 18 6 2.4471 -4.6666 -4.3356 19 6 3.8219 -4.8397 -4.1266 20 6 4.5586 -5.4781 -5.1078 21 6 3.9214 -5.9206 -6.2536 22 7 2.6256 -5.7433 -6.4248 23 6 1.8792 -5.1473 -5.5181 24 6 1.0386 -3.4110 0.9445 25 6 2.0688 -3.7867 -0.1226 26 1 -0.4851 0.8368 0.0738 27 1 -0.2445 -3.4233 -1.4618 28 1 -0.5994 -1.7381 -1.0121 29 1 0.2650 0.1563 -2.5793 30 1 4.2940 -4.4832 -3.2231 31 1 5.6204 -5.6295 -4.9809 32 1 4.4949 -6.4196 -7.0208 33 1 0.8203 -5.0254 -5.6919 34 1 1.4142 -3.0837 1.9139 35 1 0.1084 -3.9786 0.9679 36 1 1.8162 -4.6014 -0.8012 37 1 3.1223 -3.7068 0.1451 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000596281766.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:59 Heat of formation + Delta-G solvation = 157.439451 kcal Electronic energy + Delta-G solvation = -22470.181396 eV Core-core repulsion = 19250.372460 eV Total energy + Delta-G solvation = -3219.808936 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.86352 -40.85560 -38.55125 -36.54988 -34.77743 -34.17102 -33.08045 -31.89387 -29.64621 -28.05006 -27.33082 -24.61502 -24.36169 -23.24200 -22.85395 -21.90981 -20.80794 -19.41850 -18.19059 -17.94676 -17.35180 -17.07018 -16.66517 -16.51676 -16.23871 -15.63069 -15.23141 -15.06980 -14.80125 -14.62240 -13.99701 -13.75280 -13.44957 -13.21310 -12.89231 -12.77858 -12.50269 -12.32080 -12.05493 -11.98606 -11.91529 -11.64016 -11.12658 -10.86221 -10.62445 -10.53500 -10.42218 -10.02878 -9.16065 -8.55663 -8.09529 -6.16765 0.16309 0.34946 1.10247 1.19726 1.41129 1.47723 1.52277 1.55151 2.32412 2.41574 2.87614 2.99685 3.50593 3.66365 3.72399 3.98089 4.05986 4.08545 4.23988 4.33128 4.35791 4.45558 4.66202 4.76278 4.79486 4.89349 4.95283 5.06307 5.19692 5.22466 5.32316 5.37411 5.50696 5.63283 5.68326 5.87375 5.93624 6.13296 6.41430 6.77502 6.86441 7.04493 7.37958 7.43910 8.91675 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.021197 B = 0.005591 C = 0.005150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.645321 B = 5006.679021 C = 5435.105060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.893 5.893 2 C 0.056 3.944 3 Si 0.922 3.078 4 H -0.269 1.269 5 H -0.286 1.286 6 H -0.281 1.281 7 C -0.498 4.498 8 H 0.034 0.966 9 C 0.014 3.986 10 C 0.179 3.821 11 N -0.492 5.492 12 C 0.302 3.698 13 N -0.329 5.329 14 N -0.562 5.562 15 H 0.450 0.550 16 C 0.584 3.416 17 N -0.626 5.626 18 C 0.099 3.901 19 C -0.120 4.120 20 C -0.140 4.140 21 C 0.061 3.939 22 N -0.488 5.488 23 C 0.049 3.951 24 C -0.186 4.186 25 C -0.183 4.183 26 H 0.273 0.727 27 H 0.064 0.936 28 H 0.127 0.873 29 H 0.231 0.769 30 H 0.121 0.879 31 H 0.163 0.837 32 H 0.184 0.816 33 H 0.144 0.856 34 H 0.070 0.930 35 H 0.083 0.917 36 H 0.086 0.914 37 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.673 -4.315 -7.836 9.337 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.145 4.145 3 Si 0.748 3.252 4 H -0.193 1.193 5 H -0.212 1.212 6 H -0.207 1.207 7 C -0.536 4.536 8 H 0.052 0.948 9 C 0.012 3.988 10 C 0.058 3.942 11 N -0.198 5.198 12 C 0.003 3.997 13 N -0.151 5.151 14 N -0.297 5.297 15 H 0.298 0.702 16 C 0.224 3.776 17 N -0.372 5.372 18 C -0.005 4.005 19 C -0.149 4.149 20 C -0.160 4.160 21 C -0.097 4.097 22 N -0.197 5.197 23 C -0.112 4.112 24 C -0.225 4.225 25 C -0.221 4.221 26 H 0.083 0.917 27 H 0.082 0.918 28 H 0.144 0.856 29 H 0.247 0.753 30 H 0.139 0.861 31 H 0.180 0.820 32 H 0.201 0.799 33 H 0.162 0.838 34 H 0.089 0.911 35 H 0.102 0.898 36 H 0.105 0.895 37 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.110 -4.415 -8.818 10.085 hybrid contribution 1.309 0.881 1.101 1.924 sum 3.420 -3.535 -7.717 9.151 Atomic orbital electron populations 1.69780 1.05728 1.28035 1.49543 1.25151 0.95395 0.99928 0.94072 0.86196 0.79393 0.81395 0.78170 1.19298 1.21216 1.20678 1.20517 0.93292 0.90730 1.49025 0.94765 1.19299 0.96198 0.89219 0.94044 1.21388 0.95823 0.99644 0.77364 1.44942 1.49560 1.06305 1.18992 1.26119 0.95009 0.88869 0.89686 1.76734 1.19736 1.01972 1.16613 1.46599 1.56465 1.04920 1.21690 0.70228 1.20111 0.87675 0.86707 0.83139 1.68786 1.35545 1.01003 1.31887 1.19544 0.91799 0.98839 0.90274 1.22118 0.92992 0.99838 0.99971 1.22326 1.02364 0.97448 0.93899 1.23164 0.90231 0.98639 0.97663 1.67511 1.07987 1.13020 1.31175 1.23228 0.99925 0.98455 0.89550 1.22906 0.99424 1.05713 0.94414 1.22761 0.95350 1.00915 1.03048 0.91706 0.91751 0.85589 0.75320 0.86058 0.81964 0.79934 0.83816 0.91127 0.89814 0.89527 0.92326 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -39.73 10.31 21.44 0.22 -39.51 16 2 C 0.06 2.57 4.00 84.66 0.34 2.91 16 3 Si 0.92 38.01 29.56 68.60 2.03 40.04 16 4 H -0.27 -10.47 7.11 99.48 0.71 -9.76 16 5 H -0.29 -12.27 7.11 99.48 0.71 -11.56 16 6 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 7 C -0.50 -24.26 8.65 25.60 0.22 -24.04 16 8 H 0.03 1.79 7.84 -2.91 -0.02 1.77 16 9 C 0.01 0.60 2.00 -52.93 -0.11 0.50 16 10 C 0.18 7.17 5.33 86.38 0.46 7.63 16 11 N -0.49 -18.96 2.55 -530.57 -1.35 -20.31 16 12 C 0.30 11.08 11.50 179.85 2.07 13.15 16 13 N -0.33 -11.76 12.60 -59.46 -0.75 -12.51 16 14 N -0.56 -19.19 7.23 -58.60 -0.42 -19.61 16 15 H 0.45 13.54 8.50 -213.30 -1.81 11.73 16 16 C 0.58 21.84 8.45 260.56 2.20 24.04 16 17 N -0.63 -23.34 10.01 -190.08 -1.90 -25.24 16 18 C 0.10 3.30 5.15 39.19 0.20 3.50 16 19 C -0.12 -3.58 10.14 22.75 0.23 -3.35 16 20 C -0.14 -3.21 10.10 22.32 0.23 -2.98 16 21 C 0.06 1.41 11.17 84.71 0.95 2.35 16 22 N -0.49 -14.12 10.34 -194.60 -2.01 -16.13 16 23 C 0.05 1.51 11.16 85.07 0.95 2.46 16 24 C -0.19 -7.69 9.95 30.60 0.30 -7.38 16 25 C -0.18 -7.69 9.93 30.60 0.30 -7.39 16 26 H 0.27 11.53 8.32 -92.71 -0.77 10.76 16 27 H 0.06 2.49 8.11 -2.39 -0.02 2.47 16 28 H 0.13 5.22 5.94 -2.39 -0.01 5.21 16 29 H 0.23 7.93 7.18 -2.91 -0.02 7.91 16 30 H 0.12 3.80 8.06 -2.91 -0.02 3.77 16 31 H 0.16 2.57 8.06 -2.91 -0.02 2.54 16 32 H 0.18 2.85 8.06 -2.91 -0.02 2.83 16 33 H 0.14 4.41 8.06 -2.91 -0.02 4.39 16 34 H 0.07 3.00 8.14 -2.39 -0.02 2.99 16 35 H 0.08 3.14 8.14 -2.39 -0.02 3.12 16 36 H 0.09 3.59 7.75 -2.39 -0.02 3.57 16 37 H 0.06 2.53 8.14 -2.39 -0.02 2.51 16 Total: -1.00 -52.29 321.75 3.44 -48.85 By element: Atomic # 1 Polarization: 33.75 SS G_CDS: -0.71 Total: 33.03 kcal Atomic # 6 Polarization: 3.05 SS G_CDS: 8.35 Total: 11.39 kcal Atomic # 7 Polarization: -127.10 SS G_CDS: -6.22 Total: -133.32 kcal Atomic # 14 Polarization: 38.01 SS G_CDS: 2.03 Total: 40.04 kcal Total: -52.29 3.44 -48.85 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000596281766.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 206.290 kcal (2) G-P(sol) polarization free energy of solvation -52.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 153.999 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.440 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.851 kcal (6) G-S(sol) free energy of system = (1) + (5) 157.439 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds