Wall clock time and date at job start Tue Mar 31 2020 06:21:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48506 * 109.46776 * 269.99923 * 3 2 1 5 5 H 1.48492 * 109.47447 * 30.00002 * 3 2 1 6 6 H 1.48502 * 109.47253 * 150.00143 * 3 2 1 7 7 C 1.37883 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50852 * 299.92012 * 9 7 2 11 11 C 1.53120 * 109.50406 * 60.00003 * 9 7 2 12 12 C 1.53119 * 109.16064 * 177.59049 * 11 9 7 13 13 C 1.53033 * 109.27765 * 302.34654 * 12 11 9 14 14 N 1.46847 * 109.52535 * 59.18268 * 13 12 11 15 15 C 1.46906 * 110.99892 * 174.15855 * 14 13 12 16 16 C 1.50704 * 109.47007 * 66.04379 * 15 14 13 17 17 C 1.38739 * 119.78850 * 89.99853 * 16 15 14 18 18 C 1.37848 * 120.68322 * 179.71965 * 17 16 15 19 19 C 1.38940 * 119.81900 * 0.25458 * 18 17 16 20 20 O 1.34805 * 133.49981 * 179.97438 * 19 18 17 21 21 C 1.34456 * 110.89355 * 180.02562 * 20 19 18 22 22 C 1.33998 * 110.15178 * 359.97438 * 21 20 19 23 23 C 1.40495 * 119.22040 * 0.02562 * 19 18 17 24 24 C 1.36735 * 119.78945 * 270.21381 * 16 15 14 25 25 C 1.46844 * 111.19309 * 298.25413 * 14 13 12 26 26 H 0.96997 * 119.99720 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.52305 * 57.69073 * 11 9 7 28 28 H 1.08994 * 109.52227 * 297.49912 * 11 9 7 29 29 H 1.08995 * 109.50131 * 182.40537 * 12 11 9 30 30 H 1.09001 * 109.50153 * 62.28789 * 12 11 9 31 31 H 1.08994 * 109.46768 * 299.15907 * 13 12 11 32 32 H 1.09014 * 109.46024 * 179.19583 * 13 12 11 33 33 H 1.08992 * 109.47160 * 306.04045 * 15 14 13 34 34 H 1.08997 * 109.46915 * 186.04517 * 15 14 13 35 35 H 1.08002 * 119.66283 * 0.02562 * 17 16 15 36 36 H 1.08000 * 120.09478 * 180.28266 * 18 17 16 37 37 H 1.07992 * 124.92638 * 179.97438 * 21 20 19 38 38 H 1.07992 * 126.90823 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.14484 * 0.04812 * 24 16 15 40 40 H 1.09001 * 109.45928 * 181.76312 * 25 14 13 41 41 H 1.09005 * 109.46404 * 301.72571 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 1 0.6255 -2.5575 0.8925 11 6 0.3698 -2.5818 -1.2479 12 6 -0.3458 -3.9353 -1.2695 13 6 0.6943 -5.0574 -1.2373 14 7 1.5110 -4.9348 -0.0230 15 6 2.4285 -6.0741 0.1115 16 6 3.4395 -6.0396 -1.0056 17 6 4.6333 -5.3541 -0.8338 18 6 5.5735 -5.3153 -1.8413 19 6 5.3240 -5.9640 -3.0444 20 8 6.0265 -6.1035 -4.1864 21 6 5.3441 -6.8378 -5.0825 22 6 4.1646 -7.2132 -4.5693 23 6 4.1106 -6.6515 -3.2141 24 6 3.1723 -6.6804 -2.1836 25 6 2.2447 -3.6630 -0.0029 26 1 -0.4849 0.8400 0.0004 27 1 0.9906 -2.4838 -2.1385 28 1 -0.3680 -1.7799 -1.2270 29 1 -0.9416 -4.0174 -2.1785 30 1 -0.9964 -4.0169 -0.3987 31 1 1.3357 -4.9835 -2.1154 32 1 0.1874 -6.0225 -1.2381 33 1 1.8626 -7.0043 0.0609 34 1 2.9440 -6.0143 1.0700 35 1 4.8304 -4.8496 0.1006 36 1 6.5016 -4.7826 -1.6957 37 1 5.6955 -7.0886 -6.0723 38 1 3.4060 -7.8087 -5.0551 39 1 2.2397 -7.2092 -2.3140 40 1 2.8641 -3.6152 0.8927 41 1 2.8789 -3.5955 -0.8869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:52 Heat of formation + Delta-G solvation = 25.039272 kcal Electronic energy + Delta-G solvation = -22582.835565 eV Core-core repulsion = 19428.532919 eV Total energy + Delta-G solvation = -3154.302646 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -42.39734 -39.21512 -37.11451 -33.87296 -32.80296 -32.03914 -30.18884 -29.69645 -29.18047 -25.90615 -24.93730 -23.20650 -22.21785 -21.46765 -21.21613 -20.75908 -18.49593 -17.40617 -17.07650 -16.36413 -16.05964 -15.33360 -14.98062 -14.37265 -14.27821 -14.10804 -13.90251 -13.43977 -13.12419 -12.81639 -12.65645 -12.49271 -12.33183 -11.87931 -11.63046 -11.57589 -11.25256 -10.92433 -10.85183 -10.63391 -10.58808 -10.21051 -10.04200 -9.78828 -9.44522 -9.03867 -8.67877 -8.40760 -8.26479 -8.18781 -7.66092 -5.94267 -4.00089 0.97465 1.41220 2.36144 2.79724 3.32753 3.39500 3.42381 3.75590 4.41460 4.44612 4.66751 4.68110 4.99512 5.05939 5.19381 5.35400 5.35872 5.45867 5.52165 5.66496 5.75248 5.87876 5.90501 6.03810 6.11830 6.23291 6.28838 6.30539 6.40214 6.48378 6.54028 6.66648 6.69064 6.76433 6.80916 7.00912 7.18480 7.25667 7.43030 7.67931 7.77909 7.83723 8.12029 8.21136 8.51897 9.03848 9.63982 11.11728 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.004815 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.748894 B = 5813.522058 C = 6476.161859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.889 5.889 2 C 0.063 3.937 3 Si 0.888 3.112 4 H -0.282 1.282 5 H -0.287 1.287 6 H -0.275 1.275 7 C -0.512 4.512 8 H 0.053 0.947 9 C 0.055 3.945 10 H 0.033 0.967 11 C -0.110 4.110 12 C -0.118 4.118 13 C 0.059 3.941 14 N -0.526 5.526 15 C 0.093 3.907 16 C -0.125 4.125 17 C -0.072 4.072 18 C -0.109 4.109 19 C 0.047 3.953 20 O -0.199 6.199 21 C -0.001 4.001 22 C -0.209 4.209 23 C -0.135 4.135 24 C -0.062 4.062 25 C 0.064 3.936 26 H 0.259 0.741 27 H 0.028 0.972 28 H 0.090 0.910 29 H 0.045 0.955 30 H 0.060 0.940 31 H 0.029 0.971 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.081 0.919 35 H 0.136 0.864 36 H 0.130 0.870 37 H 0.205 0.795 38 H 0.155 0.845 39 H 0.123 0.877 40 H 0.057 0.943 41 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.225 -15.092 -6.400 17.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.138 4.138 3 Si 0.717 3.283 4 H -0.208 1.208 5 H -0.213 1.213 6 H -0.200 1.200 7 C -0.551 4.551 8 H 0.071 0.929 9 C 0.036 3.964 10 H 0.051 0.949 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.069 4.069 14 N -0.248 5.248 15 C -0.036 4.036 16 C -0.127 4.127 17 C -0.091 4.091 18 C -0.128 4.128 19 C 0.000 4.000 20 O -0.100 6.100 21 C -0.066 4.066 22 C -0.228 4.228 23 C -0.136 4.136 24 C -0.081 4.081 25 C -0.062 4.062 26 H 0.069 0.931 27 H 0.047 0.953 28 H 0.108 0.892 29 H 0.063 0.937 30 H 0.079 0.921 31 H 0.047 0.953 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.100 0.900 35 H 0.154 0.846 36 H 0.148 0.852 37 H 0.221 0.779 38 H 0.173 0.827 39 H 0.141 0.859 40 H 0.076 0.924 41 H 0.045 0.955 Dipole moment (debyes) X Y Z Total from point charges 6.984 -14.838 -5.998 17.462 hybrid contribution 0.891 0.878 -1.026 1.618 sum 7.875 -13.960 -7.024 17.500 Atomic orbital electron populations 1.69889 1.05828 1.26241 1.50799 1.24923 0.94802 0.98881 0.95190 0.86655 0.79924 0.83760 0.78005 1.20841 1.21253 1.19960 1.21141 0.92780 0.90679 1.50519 0.92911 1.18665 0.92624 0.90383 0.94747 0.94865 1.21645 1.00009 0.94690 0.98490 1.21677 0.97188 0.96571 1.00107 1.22089 0.95478 0.98497 0.90838 1.62443 1.22385 1.02396 1.37571 1.21287 0.91478 0.95540 0.95247 1.20431 0.96503 0.98449 0.97346 1.20938 0.92280 0.97324 0.98551 1.19917 1.01417 1.01808 0.89612 1.19637 0.91375 1.01166 0.87812 1.83981 1.43698 1.60771 1.21555 1.23883 0.92434 0.95551 0.94713 1.22501 0.99415 1.06575 0.94339 1.19923 0.95960 1.02309 0.95430 1.20136 0.97739 0.98814 0.91406 1.22369 0.96606 0.88326 0.98934 0.93111 0.95314 0.89155 0.93658 0.92129 0.95312 0.92628 0.90588 0.90031 0.84622 0.85177 0.77867 0.82726 0.85897 0.92430 0.95533 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.52 11.35 55.43 0.63 -24.89 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.43 29.54 -169.99 -5.02 16.41 16 4 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 5 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 6 H -0.27 -6.53 7.11 56.52 0.40 -6.12 16 7 C -0.51 -14.11 8.56 -34.44 -0.29 -14.40 16 8 H 0.05 1.44 7.74 -52.49 -0.41 1.03 16 9 C 0.05 1.37 2.26 -91.69 -0.21 1.16 16 10 H 0.03 0.92 8.14 -51.93 -0.42 0.50 16 11 C -0.11 -2.66 5.02 -26.61 -0.13 -2.79 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.04 4.79 -3.84 -0.02 1.02 16 14 N -0.53 -9.54 4.86 -236.11 -1.15 -10.69 16 15 C 0.09 1.35 5.55 -4.97 -0.03 1.32 16 16 C -0.13 -1.83 4.03 -104.98 -0.42 -2.26 16 17 C -0.07 -1.05 7.97 -39.54 -0.32 -1.36 16 18 C -0.11 -1.56 10.07 -39.46 -0.40 -1.96 16 19 C 0.05 0.71 7.42 -38.47 -0.29 0.42 16 20 O -0.20 -2.73 10.58 3.90 0.04 -2.69 16 21 C 0.00 -0.01 11.96 29.24 0.35 0.34 16 22 C -0.21 -2.43 11.14 -37.62 -0.42 -2.85 16 23 C -0.14 -1.96 6.40 -105.16 -0.67 -2.63 16 24 C -0.06 -0.88 8.06 -39.69 -0.32 -1.20 16 25 C 0.06 1.35 3.75 -3.83 -0.01 1.34 16 26 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 27 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.09 2.43 6.15 -51.93 -0.32 2.11 16 29 H 0.04 0.81 8.14 -51.93 -0.42 0.39 16 30 H 0.06 1.23 8.14 -51.93 -0.42 0.81 16 31 H 0.03 0.53 6.54 -51.93 -0.34 0.19 16 32 H 0.06 0.85 8.06 -51.92 -0.42 0.43 16 33 H 0.08 0.97 8.00 -51.93 -0.42 0.56 16 34 H 0.08 1.10 8.08 -51.93 -0.42 0.68 16 35 H 0.14 1.81 8.01 -52.49 -0.42 1.39 16 36 H 0.13 1.59 8.06 -52.49 -0.42 1.17 16 37 H 0.20 1.18 8.06 -52.49 -0.42 0.75 16 38 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 39 H 0.12 1.56 8.00 -52.49 -0.42 1.14 16 40 H 0.06 1.18 8.12 -51.93 -0.42 0.76 16 41 H 0.03 0.58 6.46 -51.93 -0.34 0.24 16 LS Contribution 326.24 15.07 4.92 4.92 Total: -1.00 -30.41 326.24 -10.03 -40.43 By element: Atomic # 1 Polarization: 7.20 SS G_CDS: -6.01 Total: 1.19 kcal Atomic # 6 Polarization: -21.24 SS G_CDS: -3.44 Total: -24.68 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: -0.52 Total: -35.57 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.41 -10.03 -40.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.474 kcal (2) G-P(sol) polarization free energy of solvation -30.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 35.068 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.029 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.435 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds