Wall clock time and date at job start Tue Mar 31 2020 06:21:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86800 * 120.00078 * 2 1 4 4 H 1.48506 * 109.46776 * 269.99923 * 3 2 1 5 5 H 1.48492 * 109.47447 * 30.00002 * 3 2 1 6 6 H 1.48502 * 109.47253 * 150.00143 * 3 2 1 7 7 C 1.37883 * 119.99823 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99657 * 179.97438 * 7 2 1 9 9 C 1.50696 * 119.99825 * 359.97438 * 7 2 1 10 10 H 1.08998 * 109.50852 * 299.92012 * 9 7 2 11 11 C 1.53120 * 109.50406 * 60.00003 * 9 7 2 12 12 C 1.53119 * 109.16064 * 177.59049 * 11 9 7 13 13 C 1.53033 * 109.27765 * 302.34654 * 12 11 9 14 14 N 1.46847 * 109.52535 * 59.18268 * 13 12 11 15 15 C 1.46906 * 110.99892 * 174.15855 * 14 13 12 16 16 C 1.50704 * 109.47007 * 66.04379 * 15 14 13 17 17 C 1.38739 * 119.78850 * 89.99853 * 16 15 14 18 18 C 1.37848 * 120.68322 * 179.71965 * 17 16 15 19 19 C 1.38940 * 119.81900 * 0.25458 * 18 17 16 20 20 O 1.34805 * 133.49981 * 179.97438 * 19 18 17 21 21 C 1.34456 * 110.89355 * 180.02562 * 20 19 18 22 22 C 1.33998 * 110.15178 * 359.97438 * 21 20 19 23 23 C 1.40495 * 119.22040 * 0.02562 * 19 18 17 24 24 C 1.36735 * 119.78945 * 270.21381 * 16 15 14 25 25 C 1.46844 * 111.19309 * 298.25413 * 14 13 12 26 26 H 0.96997 * 119.99720 * 359.97438 * 1 2 3 27 27 H 1.09002 * 109.52305 * 57.69073 * 11 9 7 28 28 H 1.08994 * 109.52227 * 297.49912 * 11 9 7 29 29 H 1.08995 * 109.50131 * 182.40537 * 12 11 9 30 30 H 1.09001 * 109.50153 * 62.28789 * 12 11 9 31 31 H 1.08994 * 109.46768 * 299.15907 * 13 12 11 32 32 H 1.09014 * 109.46024 * 179.19583 * 13 12 11 33 33 H 1.08992 * 109.47160 * 306.04045 * 15 14 13 34 34 H 1.08997 * 109.46915 * 186.04517 * 15 14 13 35 35 H 1.08002 * 119.66283 * 0.02562 * 17 16 15 36 36 H 1.08000 * 120.09478 * 180.28266 * 18 17 16 37 37 H 1.07992 * 124.92638 * 179.97438 * 21 20 19 38 38 H 1.07992 * 126.90823 * 180.02562 * 22 21 20 39 39 H 1.07996 * 120.14484 * 0.04812 * 24 16 15 40 40 H 1.09001 * 109.45928 * 181.76312 * 25 14 13 41 41 H 1.09005 * 109.46404 * 301.72571 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0463 -1.4002 5 1 1.4467 2.6527 0.7000 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4991 0.0017 10 1 0.6255 -2.5575 0.8925 11 6 0.3698 -2.5818 -1.2479 12 6 -0.3458 -3.9353 -1.2695 13 6 0.6943 -5.0574 -1.2373 14 7 1.5110 -4.9348 -0.0230 15 6 2.4285 -6.0741 0.1115 16 6 3.4395 -6.0396 -1.0056 17 6 4.6333 -5.3541 -0.8338 18 6 5.5735 -5.3153 -1.8413 19 6 5.3240 -5.9640 -3.0444 20 8 6.0265 -6.1035 -4.1864 21 6 5.3441 -6.8378 -5.0825 22 6 4.1646 -7.2132 -4.5693 23 6 4.1106 -6.6515 -3.2141 24 6 3.1723 -6.6804 -2.1836 25 6 2.2447 -3.6630 -0.0029 26 1 -0.4849 0.8400 0.0004 27 1 0.9906 -2.4838 -2.1385 28 1 -0.3680 -1.7799 -1.2270 29 1 -0.9416 -4.0174 -2.1785 30 1 -0.9964 -4.0169 -0.3987 31 1 1.3357 -4.9835 -2.1154 32 1 0.1874 -6.0225 -1.2381 33 1 1.8626 -7.0043 0.0609 34 1 2.9440 -6.0143 1.0700 35 1 4.8304 -4.8496 0.1006 36 1 6.5016 -4.7826 -1.6957 37 1 5.6955 -7.0886 -6.0723 38 1 3.4060 -7.8087 -5.0551 39 1 2.2397 -7.2092 -2.3140 40 1 2.8641 -3.6152 0.8927 41 1 2.8789 -3.5955 -0.8869 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175592.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:50 Heat of formation + Delta-G solvation = 7.790812 kcal Electronic energy + Delta-G solvation = -22583.583514 eV Core-core repulsion = 19428.532919 eV Total energy + Delta-G solvation = -3155.050596 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.36466 -40.53262 -38.46883 -35.61560 -33.88910 -33.63443 -31.74787 -31.18080 -30.21234 -27.21331 -26.91499 -24.40623 -23.55045 -22.99972 -22.23383 -22.09471 -20.21360 -18.45919 -18.39561 -17.97788 -17.07500 -16.77760 -16.53816 -15.94057 -15.72970 -15.27896 -15.10556 -14.91378 -14.42136 -14.31020 -14.04906 -13.95810 -13.58772 -13.34376 -12.95373 -12.88003 -12.85853 -12.69731 -12.52183 -12.26889 -11.93689 -11.74049 -11.67382 -11.38145 -11.12887 -10.87287 -10.64942 -10.36769 -9.52056 -9.17595 -9.09493 -8.07058 -6.20613 -0.01796 0.32298 1.40229 1.40910 1.46302 1.51019 1.89061 2.42872 2.67105 3.19918 3.25448 3.51852 3.74625 3.88684 4.09573 4.20736 4.28202 4.32153 4.32909 4.40212 4.52461 4.61800 4.68426 4.71850 4.80479 4.93131 4.93496 4.95540 5.02698 5.12998 5.20551 5.22775 5.24828 5.39959 5.50483 5.52000 5.59624 5.64423 5.68668 5.98624 6.13685 6.19828 6.22501 6.36958 6.48015 6.92095 7.46937 8.97575 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.017822 B = 0.004815 C = 0.004323 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1570.748894 B = 5813.522058 C = 6476.161859 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.915 5.915 2 C 0.015 3.985 3 Si 0.950 3.050 4 H -0.279 1.279 5 H -0.282 1.282 6 H -0.267 1.267 7 C -0.533 4.533 8 H 0.049 0.951 9 C 0.051 3.949 10 H -0.002 1.002 11 C -0.103 4.103 12 C -0.112 4.112 13 C 0.065 3.935 14 N -0.534 5.534 15 C 0.096 3.904 16 C -0.134 4.134 17 C -0.087 4.087 18 C -0.119 4.119 19 C 0.021 3.979 20 O -0.213 6.213 21 C 0.008 3.992 22 C -0.223 4.223 23 C -0.152 4.152 24 C -0.068 4.068 25 C 0.084 3.916 26 H 0.260 0.740 27 H 0.014 0.986 28 H 0.057 0.943 29 H 0.066 0.934 30 H 0.053 0.947 31 H 0.024 0.976 32 H 0.091 0.909 33 H 0.102 0.898 34 H 0.090 0.910 35 H 0.140 0.860 36 H 0.142 0.858 37 H 0.251 0.749 38 H 0.182 0.818 39 H 0.140 0.860 40 H 0.057 0.943 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.819 -16.670 -7.585 19.914 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.555 5.555 2 C -0.184 4.184 3 Si 0.776 3.224 4 H -0.205 1.205 5 H -0.208 1.208 6 H -0.192 1.192 7 C -0.572 4.572 8 H 0.068 0.932 9 C 0.033 3.967 10 H 0.016 0.984 11 C -0.141 4.141 12 C -0.150 4.150 13 C -0.062 4.062 14 N -0.256 5.256 15 C -0.031 4.031 16 C -0.136 4.136 17 C -0.106 4.106 18 C -0.137 4.137 19 C -0.026 4.026 20 O -0.115 6.115 21 C -0.056 4.056 22 C -0.242 4.242 23 C -0.153 4.153 24 C -0.087 4.087 25 C -0.043 4.043 26 H 0.069 0.931 27 H 0.032 0.968 28 H 0.075 0.925 29 H 0.084 0.916 30 H 0.072 0.928 31 H 0.042 0.958 32 H 0.109 0.891 33 H 0.120 0.880 34 H 0.108 0.892 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.267 0.733 38 H 0.199 0.801 39 H 0.158 0.842 40 H 0.076 0.924 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 7.587 -16.435 -7.182 19.474 hybrid contribution 0.725 1.330 -0.714 1.675 sum 8.312 -15.105 -7.896 18.963 Atomic orbital electron populations 1.70031 1.07126 1.26964 1.51375 1.25689 0.95626 1.02188 0.94878 0.85675 0.78906 0.79717 0.78081 1.20460 1.20753 1.19187 1.21513 0.92892 0.92238 1.50538 0.93224 1.18601 0.93058 0.91520 0.93555 0.98388 1.21446 0.99021 0.96422 0.97240 1.21598 0.97632 0.94894 1.00856 1.22057 0.94757 0.99011 0.90419 1.62363 1.23134 1.02156 1.37951 1.21360 0.91268 0.94805 0.95715 1.20453 0.96560 0.98927 0.97618 1.21082 0.92720 0.97833 0.98948 1.20136 1.01973 1.01900 0.89730 1.19908 0.92196 1.02011 0.88486 1.83983 1.44357 1.61458 1.21680 1.24848 0.91810 0.93439 0.95460 1.22877 1.00709 1.07352 0.93256 1.20362 0.95770 1.02354 0.96853 1.20349 0.98368 0.98787 0.91162 1.21959 0.95271 0.88652 0.98458 0.93125 0.96754 0.92488 0.91566 0.92800 0.95821 0.89068 0.88023 0.89197 0.84250 0.84016 0.73289 0.80116 0.84236 0.92417 0.96493 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -54.02 11.35 21.45 0.24 -53.78 16 2 C 0.01 0.84 5.30 84.66 0.45 1.29 16 3 Si 0.95 44.50 29.54 68.60 2.03 46.53 16 4 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 5 H -0.28 -12.91 7.11 99.48 0.71 -12.20 16 6 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 7 C -0.53 -30.12 8.56 25.60 0.22 -29.90 16 8 H 0.05 2.76 7.74 -2.91 -0.02 2.73 16 9 C 0.05 2.66 2.26 -11.49 -0.03 2.64 16 10 H 0.00 -0.12 8.14 -2.39 -0.02 -0.14 16 11 C -0.10 -5.10 5.02 30.67 0.15 -4.94 16 12 C -0.11 -4.37 6.09 30.65 0.19 -4.19 16 13 C 0.07 2.18 4.79 86.32 0.41 2.59 16 14 N -0.53 -18.68 4.86 -900.91 -4.38 -23.06 16 15 C 0.10 2.58 5.55 85.56 0.47 3.06 16 16 C -0.13 -3.74 4.03 -20.10 -0.08 -3.82 16 17 C -0.09 -2.50 7.97 22.30 0.18 -2.32 16 18 C -0.12 -3.39 10.07 22.35 0.23 -3.17 16 19 C 0.02 0.62 7.42 22.99 0.17 0.79 16 20 O -0.21 -5.56 10.58 -8.96 -0.09 -5.65 16 21 C 0.01 0.15 11.96 66.85 0.80 0.95 16 22 C -0.22 -4.60 11.14 23.54 0.26 -4.34 16 23 C -0.15 -4.19 6.40 -20.21 -0.13 -4.32 16 24 C -0.07 -1.81 8.06 22.20 0.18 -1.63 16 25 C 0.08 3.56 3.75 86.33 0.32 3.89 16 26 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 27 H 0.01 0.70 8.14 -2.39 -0.02 0.68 16 28 H 0.06 3.18 6.15 -2.39 -0.01 3.16 16 29 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 30 H 0.05 2.17 8.14 -2.39 -0.02 2.15 16 31 H 0.02 0.83 6.54 -2.39 -0.02 0.81 16 32 H 0.09 2.44 8.06 -2.38 -0.02 2.42 16 33 H 0.10 2.24 8.00 -2.39 -0.02 2.22 16 34 H 0.09 2.27 8.08 -2.39 -0.02 2.25 16 35 H 0.14 3.72 8.01 -2.91 -0.02 3.70 16 36 H 0.14 3.48 8.06 -2.91 -0.02 3.46 16 37 H 0.25 1.81 8.06 -2.91 -0.02 1.79 16 38 H 0.18 2.60 8.06 -2.91 -0.02 2.58 16 39 H 0.14 3.14 8.00 -2.91 -0.02 3.11 16 40 H 0.06 2.39 8.12 -2.39 -0.02 2.37 16 41 H 0.02 0.75 6.46 -2.38 -0.02 0.73 16 Total: -1.00 -67.60 326.24 2.61 -65.00 By element: Atomic # 1 Polarization: 13.38 SS G_CDS: 1.01 Total: 14.39 kcal Atomic # 6 Polarization: -47.22 SS G_CDS: 3.80 Total: -43.42 kcal Atomic # 7 Polarization: -72.71 SS G_CDS: -4.13 Total: -76.84 kcal Atomic # 8 Polarization: -5.56 SS G_CDS: -0.09 Total: -5.65 kcal Atomic # 14 Polarization: 44.50 SS G_CDS: 2.03 Total: 46.53 kcal Total: -67.60 2.61 -65.00 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175592.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.789 kcal (2) G-P(sol) polarization free energy of solvation -67.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.606 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds