Wall clock time and date at job start Tue Mar 31 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99515 * 2 1 4 4 H 1.48500 * 109.47020 * 240.00100 * 3 2 1 5 5 H 1.48504 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47047 * 120.00137 * 3 2 1 7 7 C 1.37869 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50942 * 60.07755 * 9 7 2 11 11 C 1.53123 * 109.50137 * 299.99534 * 9 7 2 12 12 C 1.53116 * 109.15937 * 182.36882 * 11 9 7 13 13 C 1.53035 * 109.28325 * 57.65440 * 12 11 9 14 14 N 1.46846 * 109.52526 * 300.82383 * 13 12 11 15 15 C 1.46896 * 111.00429 * 185.83577 * 14 13 12 16 16 C 1.50704 * 109.46812 * 66.04411 * 15 14 13 17 17 C 1.38743 * 119.78746 * 270.02177 * 16 15 14 18 18 C 1.37847 * 120.68065 * 180.02562 * 17 16 15 19 19 C 1.38942 * 119.81851 * 0.02562 * 18 17 16 20 20 O 1.34817 * 133.49147 * 180.34571 * 19 18 17 21 21 C 1.34447 * 110.88668 * 180.02562 * 20 19 18 22 22 C 1.33997 * 110.15303 * 359.58439 * 21 20 19 23 23 C 1.40483 * 119.22453 * 359.97438 * 19 18 17 24 24 C 1.36733 * 119.78892 * 90.00228 * 16 15 14 25 25 C 1.46850 * 111.19910 * 61.73586 * 14 13 12 26 26 H 0.96994 * 120.00513 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.52149 * 62.46239 * 11 9 7 28 28 H 1.09000 * 109.57531 * 302.29937 * 11 9 7 29 29 H 1.09005 * 109.50381 * 297.71473 * 12 11 9 30 30 H 1.09001 * 109.50397 * 177.59999 * 12 11 9 31 31 H 1.08996 * 109.46564 * 180.80120 * 13 12 11 32 32 H 1.09001 * 109.46147 * 60.83727 * 13 12 11 33 33 H 1.08996 * 109.46998 * 306.04947 * 15 14 13 34 34 H 1.09003 * 109.47366 * 186.04446 * 15 14 13 35 35 H 1.08003 * 119.66186 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.09166 * 179.97438 * 18 17 16 37 37 H 1.08002 * 124.92490 * 179.85552 * 21 20 19 38 38 H 1.08003 * 126.90505 * 180.26832 * 22 21 20 39 39 H 1.08001 * 120.14610 * 0.02562 * 24 16 15 40 40 H 1.08994 * 109.46066 * 58.27446 * 25 14 13 41 41 H 1.09003 * 109.46299 * 178.24683 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6257 -2.5575 -0.8924 11 6 0.3702 -2.5819 1.2480 12 6 -0.3461 -3.9350 1.2691 13 6 0.6933 -5.0576 1.2363 14 7 1.5101 -4.9349 0.0221 15 6 2.4270 -6.0745 -0.1131 16 6 1.6322 -7.3344 -0.3414 17 6 1.2164 -8.0932 0.7432 18 6 0.4890 -9.2489 0.5555 19 6 0.1675 -9.6616 -0.7316 20 8 -0.5174 -10.7128 -1.2251 21 6 -0.5556 -10.6720 -2.5684 22 6 0.0938 -9.5888 -3.0161 23 6 0.5915 -8.8890 -1.8256 24 6 1.3251 -7.7222 -1.6161 25 6 2.2444 -3.6634 0.0024 26 1 -0.4850 0.8400 0.0004 27 1 -0.3673 -1.7795 1.2275 28 1 0.9902 -2.4841 2.1391 29 1 -0.9968 -4.0159 0.3983 30 1 -0.9420 -4.0172 2.1782 31 1 0.1861 -6.0224 1.2369 32 1 1.3349 -4.9843 2.1144 33 1 3.0162 -6.1769 0.7982 34 1 3.0930 -5.9067 -0.9595 35 1 1.4652 -7.7750 1.7448 36 1 0.1705 -9.8325 1.4067 37 1 -1.0432 -11.4037 -3.1956 38 1 0.2249 -9.2907 -4.0459 39 1 1.6511 -7.1282 -2.4572 40 1 2.8786 -3.5966 0.8863 41 1 2.8637 -3.6155 -0.8934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597175593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:54 Heat of formation + Delta-G solvation = 24.726501 kcal Electronic energy + Delta-G solvation = -21974.883672 eV Core-core repulsion = 18820.567463 eV Total energy + Delta-G solvation = -3154.316209 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.43376 -38.95431 -37.37532 -33.87395 -32.81157 -32.07626 -30.34088 -29.81629 -29.21226 -25.82600 -24.93427 -23.19181 -22.20656 -21.50845 -21.33438 -20.66264 -18.57699 -17.47937 -17.07278 -16.37425 -16.11284 -15.37235 -15.04232 -14.53422 -14.26111 -14.12074 -13.84118 -13.27958 -13.18327 -12.91426 -12.74352 -12.55184 -12.39280 -11.89730 -11.76004 -11.47187 -11.28457 -10.91977 -10.85694 -10.65257 -10.62797 -10.25698 -10.05901 -9.81115 -9.44673 -9.05233 -8.68825 -8.47508 -8.28223 -8.22347 -7.63574 -5.95277 -4.01804 0.92634 1.36612 2.31984 2.74553 3.33248 3.38083 3.40256 3.68391 4.39503 4.43519 4.64691 4.68327 4.91993 5.01467 5.18008 5.33312 5.34511 5.40283 5.49853 5.64601 5.73706 5.83600 5.90062 5.90478 6.11448 6.20583 6.21230 6.30228 6.37686 6.41507 6.53256 6.62794 6.67972 6.75928 6.78209 6.99042 7.13140 7.24964 7.42114 7.68711 7.76747 7.83209 8.10905 8.20231 8.50038 9.02171 9.62371 11.10533 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.003337 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.106205 B = 8389.453470 C = 8530.625696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.060 3.940 14 N -0.533 5.533 15 C 0.093 3.907 16 C -0.081 4.081 17 C -0.083 4.083 18 C -0.111 4.111 19 C 0.045 3.955 20 O -0.199 6.199 21 C -0.002 4.002 22 C -0.207 4.207 23 C -0.134 4.134 24 C -0.049 4.049 25 C 0.068 3.932 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.062 0.938 32 H 0.022 0.978 33 H 0.037 0.963 34 H 0.080 0.920 35 H 0.132 0.868 36 H 0.129 0.871 37 H 0.205 0.795 38 H 0.156 0.844 39 H 0.129 0.871 40 H 0.019 0.981 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.526 -19.511 -1.609 19.585 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.554 4.554 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.149 4.149 12 C -0.155 4.155 13 C -0.068 4.068 14 N -0.257 5.257 15 C -0.035 4.035 16 C -0.082 4.082 17 C -0.102 4.102 18 C -0.130 4.130 19 C -0.002 4.002 20 O -0.101 6.101 21 C -0.067 4.067 22 C -0.226 4.226 23 C -0.134 4.134 24 C -0.068 4.068 25 C -0.059 4.059 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.080 0.920 32 H 0.040 0.960 33 H 0.055 0.945 34 H 0.098 0.902 35 H 0.150 0.850 36 H 0.147 0.853 37 H 0.222 0.778 38 H 0.174 0.826 39 H 0.147 0.853 40 H 0.038 0.962 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -0.052 -19.563 -1.835 19.649 hybrid contribution 0.970 0.983 0.495 1.467 sum 0.918 -18.580 -1.340 18.651 Atomic orbital electron populations 1.69880 1.05833 1.26414 1.50558 1.24930 0.94820 0.98918 0.95146 0.86694 0.79612 0.83331 0.78533 1.20307 1.21335 1.20405 1.21111 0.92779 0.90700 1.50851 0.92904 1.18655 0.92596 0.90182 0.94882 0.94788 1.21653 1.00028 0.94748 0.98423 1.21669 0.97220 0.96464 1.00138 1.22114 0.95692 0.99078 0.89927 1.62030 1.23681 1.01679 1.38334 1.21010 0.93272 0.88328 1.00882 1.19470 0.99783 0.96374 0.92578 1.20882 0.96965 0.93191 0.99135 1.19831 1.02429 0.98202 0.92513 1.19623 0.97346 0.88136 0.95119 1.83976 1.62250 1.42485 1.21401 1.23886 1.01917 1.00208 0.80707 1.22542 1.04352 0.96808 0.98860 1.19951 1.03085 0.97740 0.92673 1.20153 0.95921 0.93502 0.97210 1.22334 0.96452 0.88326 0.98774 0.93012 0.89140 0.95206 0.92181 0.93618 0.91991 0.95996 0.94477 0.90169 0.85043 0.85303 0.77846 0.82588 0.85332 0.96239 0.92234 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.35 55.43 0.63 -24.79 16 2 C 0.06 1.75 5.30 -17.82 -0.09 1.65 16 3 Si 0.89 21.25 29.54 -169.99 -5.02 16.23 16 4 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 6 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 7 C -0.52 -14.12 8.57 -34.44 -0.30 -14.41 16 8 H 0.05 1.42 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.39 2.26 -91.68 -0.21 1.19 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.63 5.02 -26.61 -0.13 -2.76 16 12 C -0.12 -2.34 6.09 -26.65 -0.16 -2.50 16 13 C 0.06 1.06 5.15 -3.84 -0.02 1.04 16 14 N -0.53 -9.79 4.65 -236.11 -1.10 -10.89 16 15 C 0.09 1.38 5.11 -4.98 -0.03 1.36 16 16 C -0.08 -1.14 4.86 -104.98 -0.51 -1.65 16 17 C -0.08 -1.05 7.84 -39.54 -0.31 -1.36 16 18 C -0.11 -1.36 10.07 -39.46 -0.40 -1.76 16 19 C 0.04 0.60 7.42 -38.48 -0.29 0.32 16 20 O -0.20 -2.47 10.58 3.89 0.04 -2.43 16 21 C 0.00 -0.02 11.96 29.24 0.35 0.33 16 22 C -0.21 -2.25 11.14 -37.62 -0.42 -2.67 16 23 C -0.13 -1.81 6.40 -105.16 -0.67 -2.49 16 24 C -0.05 -0.68 9.68 -39.69 -0.38 -1.07 16 25 C 0.07 1.43 4.68 -3.83 -0.02 1.41 16 26 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 27 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 30 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 1.00 5.74 -51.93 -0.30 0.70 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.04 0.52 8.06 -51.93 -0.42 0.10 16 34 H 0.08 1.13 7.92 -51.93 -0.41 0.72 16 35 H 0.13 1.44 7.93 -52.48 -0.42 1.03 16 36 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 37 H 0.20 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.16 1.32 8.06 -52.48 -0.42 0.90 16 39 H 0.13 1.68 8.06 -52.49 -0.42 1.26 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.01 16 41 H 0.06 1.23 8.01 -51.93 -0.42 0.81 16 LS Contribution 329.93 15.07 4.97 4.97 Total: -1.00 -30.08 329.93 -10.11 -40.19 By element: Atomic # 1 Polarization: 6.13 SS G_CDS: -6.05 Total: 0.08 kcal Atomic # 6 Polarization: -19.79 SS G_CDS: -3.59 Total: -23.37 kcal Atomic # 7 Polarization: -35.21 SS G_CDS: -0.47 Total: -35.67 kcal Atomic # 8 Polarization: -2.47 SS G_CDS: 0.04 Total: -2.43 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.23 kcal Total LS contribution 4.97 Total: 4.97 kcal Total: -30.08 -10.11 -40.19 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.920 kcal (2) G-P(sol) polarization free energy of solvation -30.084 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.194 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds