Wall clock time and date at job start Tue Mar 31 2020 06:21:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86804 * 119.99515 * 2 1 4 4 H 1.48500 * 109.47020 * 240.00100 * 3 2 1 5 5 H 1.48504 * 109.47230 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47047 * 120.00137 * 3 2 1 7 7 C 1.37869 * 120.00388 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00178 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99907 * 0.02562 * 7 2 1 10 10 H 1.08997 * 109.50942 * 60.07755 * 9 7 2 11 11 C 1.53123 * 109.50137 * 299.99534 * 9 7 2 12 12 C 1.53116 * 109.15937 * 182.36882 * 11 9 7 13 13 C 1.53035 * 109.28325 * 57.65440 * 12 11 9 14 14 N 1.46846 * 109.52526 * 300.82383 * 13 12 11 15 15 C 1.46896 * 111.00429 * 185.83577 * 14 13 12 16 16 C 1.50704 * 109.46812 * 66.04411 * 15 14 13 17 17 C 1.38743 * 119.78746 * 270.02177 * 16 15 14 18 18 C 1.37847 * 120.68065 * 180.02562 * 17 16 15 19 19 C 1.38942 * 119.81851 * 0.02562 * 18 17 16 20 20 O 1.34817 * 133.49147 * 180.34571 * 19 18 17 21 21 C 1.34447 * 110.88668 * 180.02562 * 20 19 18 22 22 C 1.33997 * 110.15303 * 359.58439 * 21 20 19 23 23 C 1.40483 * 119.22453 * 359.97438 * 19 18 17 24 24 C 1.36733 * 119.78892 * 90.00228 * 16 15 14 25 25 C 1.46850 * 111.19910 * 61.73586 * 14 13 12 26 26 H 0.96994 * 120.00513 * 359.97438 * 1 2 3 27 27 H 1.08997 * 109.52149 * 62.46239 * 11 9 7 28 28 H 1.09000 * 109.57531 * 302.29937 * 11 9 7 29 29 H 1.09005 * 109.50381 * 297.71473 * 12 11 9 30 30 H 1.09001 * 109.50397 * 177.59999 * 12 11 9 31 31 H 1.08996 * 109.46564 * 180.80120 * 13 12 11 32 32 H 1.09001 * 109.46147 * 60.83727 * 13 12 11 33 33 H 1.08996 * 109.46998 * 306.04947 * 15 14 13 34 34 H 1.09003 * 109.47366 * 186.04446 * 15 14 13 35 35 H 1.08003 * 119.66186 * 0.02562 * 17 16 15 36 36 H 1.07999 * 120.09166 * 179.97438 * 18 17 16 37 37 H 1.08002 * 124.92490 * 179.85552 * 21 20 19 38 38 H 1.08003 * 126.90505 * 180.26832 * 22 21 20 39 39 H 1.08001 * 120.14610 * 0.02562 * 24 16 15 40 40 H 1.08994 * 109.46066 * 58.27446 * 25 14 13 41 41 H 1.09003 * 109.46299 * 178.24683 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1939 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2511 -2.4991 -0.0017 10 1 0.6257 -2.5575 -0.8924 11 6 0.3702 -2.5819 1.2480 12 6 -0.3461 -3.9350 1.2691 13 6 0.6933 -5.0576 1.2363 14 7 1.5101 -4.9349 0.0221 15 6 2.4270 -6.0745 -0.1131 16 6 1.6322 -7.3344 -0.3414 17 6 1.2164 -8.0932 0.7432 18 6 0.4890 -9.2489 0.5555 19 6 0.1675 -9.6616 -0.7316 20 8 -0.5174 -10.7128 -1.2251 21 6 -0.5556 -10.6720 -2.5684 22 6 0.0938 -9.5888 -3.0161 23 6 0.5915 -8.8890 -1.8256 24 6 1.3251 -7.7222 -1.6161 25 6 2.2444 -3.6634 0.0024 26 1 -0.4850 0.8400 0.0004 27 1 -0.3673 -1.7795 1.2275 28 1 0.9902 -2.4841 2.1391 29 1 -0.9968 -4.0159 0.3983 30 1 -0.9420 -4.0172 2.1782 31 1 0.1861 -6.0224 1.2369 32 1 1.3349 -4.9843 2.1144 33 1 3.0162 -6.1769 0.7982 34 1 3.0930 -5.9067 -0.9595 35 1 1.4652 -7.7750 1.7448 36 1 0.1705 -9.8325 1.4067 37 1 -1.0432 -11.4037 -3.1956 38 1 0.2249 -9.2907 -4.0459 39 1 1.6511 -7.1282 -2.4572 40 1 2.8786 -3.5966 0.8863 41 1 2.8637 -3.6155 -0.8934 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597175593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:54 Heat of formation + Delta-G solvation = 8.216907 kcal Electronic energy + Delta-G solvation = -21975.599582 eV Core-core repulsion = 18820.567463 eV Total energy + Delta-G solvation = -3155.032119 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.31411 -40.25428 -38.67684 -35.60679 -33.80949 -33.64814 -31.80348 -31.33452 -30.19935 -27.08823 -26.90304 -24.28398 -23.63791 -23.01479 -22.20144 -21.93036 -20.33444 -18.44619 -18.36938 -17.90654 -17.04190 -16.82843 -16.39259 -16.27666 -15.45658 -15.25580 -15.08242 -14.90197 -14.40789 -14.35304 -14.02345 -13.98479 -13.56446 -13.38292 -13.03005 -12.83506 -12.81974 -12.63657 -12.49885 -12.36768 -11.84315 -11.79327 -11.68401 -11.37023 -11.11272 -10.85766 -10.65440 -10.36207 -9.50271 -9.12302 -9.06812 -8.06334 -6.20956 0.02672 0.35573 1.42576 1.43890 1.49629 1.51461 1.92712 2.43542 2.65805 3.20390 3.30806 3.55173 3.78523 3.87139 4.12832 4.21516 4.24259 4.33756 4.38360 4.39884 4.51079 4.62162 4.67927 4.70218 4.76204 4.82807 4.91149 4.98193 5.00483 5.11607 5.19869 5.25930 5.30446 5.39701 5.52424 5.53485 5.64560 5.65919 5.70750 5.97980 6.14057 6.22026 6.24268 6.36039 6.47508 6.92097 7.47008 8.98005 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.033361 B = 0.003337 C = 0.003282 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 839.106205 B = 8389.453470 C = 8530.625696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.053 3.947 10 H -0.007 1.007 11 C -0.103 4.103 12 C -0.111 4.111 13 C 0.066 3.934 14 N -0.545 5.545 15 C 0.097 3.903 16 C -0.090 4.090 17 C -0.089 4.089 18 C -0.109 4.109 19 C 0.024 3.976 20 O -0.209 6.209 21 C 0.013 3.987 22 C -0.230 4.230 23 C -0.153 4.153 24 C -0.066 4.066 25 C 0.082 3.918 26 H 0.260 0.740 27 H 0.056 0.944 28 H 0.025 0.975 29 H 0.043 0.957 30 H 0.068 0.932 31 H 0.084 0.916 32 H 0.032 0.968 33 H 0.051 0.949 34 H 0.083 0.917 35 H 0.150 0.850 36 H 0.153 0.847 37 H 0.251 0.749 38 H 0.175 0.825 39 H 0.127 0.873 40 H 0.020 0.980 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.895 -21.286 -1.219 21.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.211 1.211 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.012 0.988 11 C -0.141 4.141 12 C -0.149 4.149 13 C -0.062 4.062 14 N -0.270 5.270 15 C -0.030 4.030 16 C -0.091 4.091 17 C -0.107 4.107 18 C -0.127 4.127 19 C -0.023 4.023 20 O -0.111 6.111 21 C -0.051 4.051 22 C -0.248 4.248 23 C -0.154 4.154 24 C -0.085 4.085 25 C -0.045 4.045 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.043 0.957 29 H 0.062 0.938 30 H 0.087 0.913 31 H 0.102 0.898 32 H 0.050 0.950 33 H 0.070 0.930 34 H 0.102 0.898 35 H 0.168 0.832 36 H 0.171 0.829 37 H 0.267 0.733 38 H 0.192 0.808 39 H 0.145 0.855 40 H 0.038 0.962 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 0.327 -21.357 -1.447 21.408 hybrid contribution 0.803 1.451 0.304 1.686 sum 1.130 -19.906 -1.143 19.971 Atomic orbital electron populations 1.70037 1.07230 1.27097 1.51199 1.25734 0.95645 1.02373 0.94806 0.85670 0.78392 0.79085 0.78838 1.19628 1.21065 1.19606 1.21509 0.93060 0.92128 1.50829 0.92846 1.18577 0.92997 0.91382 0.93618 0.98836 1.21455 0.99108 0.96069 0.97488 1.21585 0.97618 0.95141 1.00555 1.22070 0.95169 0.98911 0.90012 1.61927 1.24463 1.01609 1.38964 1.21013 0.92953 0.87332 1.01712 1.19429 1.00342 0.96201 0.93140 1.21064 0.96945 0.93224 0.99501 1.20143 1.01517 0.98071 0.92993 1.19945 0.97995 0.88688 0.95699 1.83987 1.62093 1.42151 1.22838 1.24794 1.00258 1.00244 0.79814 1.22876 1.05342 0.97398 0.99215 1.20312 1.03094 0.97787 0.94201 1.20254 0.96730 0.94121 0.97405 1.21991 0.95286 0.88490 0.98749 0.93116 0.92531 0.95658 0.93774 0.91331 0.89759 0.95005 0.93047 0.89848 0.83225 0.82949 0.73290 0.80780 0.85546 0.96185 0.92290 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.96 11.35 21.44 0.24 -53.72 16 2 C 0.01 0.74 5.30 84.65 0.45 1.19 16 3 Si 0.95 43.98 29.54 68.60 2.03 46.01 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.43 16 5 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 6 H -0.27 -12.08 7.11 99.48 0.71 -11.38 16 7 C -0.54 -30.01 8.57 25.60 0.22 -29.79 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.05 2.74 2.26 -11.48 -0.03 2.71 16 10 H -0.01 -0.39 8.14 -2.39 -0.02 -0.41 16 11 C -0.10 -5.02 5.02 30.67 0.15 -4.87 16 12 C -0.11 -4.41 6.09 30.65 0.19 -4.22 16 13 C 0.07 2.23 5.15 86.33 0.44 2.68 16 14 N -0.55 -19.67 4.65 -900.93 -4.19 -23.85 16 15 C 0.10 2.77 5.11 85.56 0.44 3.20 16 16 C -0.09 -2.41 4.86 -20.09 -0.10 -2.51 16 17 C -0.09 -2.05 7.84 22.30 0.17 -1.88 16 18 C -0.11 -2.45 10.07 22.35 0.23 -2.22 16 19 C 0.02 0.61 7.42 22.99 0.17 0.78 16 20 O -0.21 -4.73 10.58 -8.99 -0.10 -4.82 16 21 C 0.01 0.21 11.96 66.85 0.80 1.01 16 22 C -0.23 -4.62 11.14 23.54 0.26 -4.36 16 23 C -0.15 -4.02 6.40 -20.21 -0.13 -4.15 16 24 C -0.07 -1.82 9.68 22.20 0.21 -1.61 16 25 C 0.08 3.47 4.68 86.33 0.40 3.88 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 28 H 0.02 1.21 8.14 -2.39 -0.02 1.19 16 29 H 0.04 1.87 8.14 -2.38 -0.02 1.85 16 30 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 31 H 0.08 2.52 5.74 -2.39 -0.01 2.50 16 32 H 0.03 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.05 1.33 8.06 -2.39 -0.02 1.31 16 34 H 0.08 2.30 7.92 -2.39 -0.02 2.28 16 35 H 0.15 2.82 7.93 -2.91 -0.02 2.80 16 36 H 0.15 2.58 8.06 -2.91 -0.02 2.56 16 37 H 0.25 1.39 8.06 -2.91 -0.02 1.36 16 38 H 0.17 2.67 8.06 -2.91 -0.02 2.65 16 39 H 0.13 3.36 8.06 -2.91 -0.02 3.34 16 40 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 41 H 0.06 2.45 8.01 -2.39 -0.02 2.43 16 Total: -1.00 -66.58 329.93 2.89 -63.69 By element: Atomic # 1 Polarization: 11.85 SS G_CDS: 1.01 Total: 12.86 kcal Atomic # 6 Polarization: -44.05 SS G_CDS: 3.89 Total: -40.16 kcal Atomic # 7 Polarization: -73.63 SS G_CDS: -3.94 Total: -77.57 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.10 Total: -4.82 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -66.58 2.89 -63.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597175593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.911 kcal (2) G-P(sol) polarization free energy of solvation -66.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.330 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.694 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds