Wall clock time and date at job start Tue Mar 31 2020 06:29:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47663 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46694 * 299.99861 * 3 2 1 6 6 H 1.48500 * 109.47183 * 59.99322 * 3 2 1 7 7 C 1.37881 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99602 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.53740 * 300.09064 * 9 7 2 11 11 C 1.53114 * 109.50782 * 60.19436 * 9 7 2 12 12 C 1.53119 * 109.16204 * 177.59344 * 11 9 7 13 13 C 1.53035 * 109.28007 * 302.34544 * 12 11 9 14 14 N 1.46850 * 109.52221 * 59.17879 * 13 12 11 15 15 C 1.46894 * 110.99842 * 174.16133 * 14 13 12 16 16 C 1.50705 * 109.47517 * 294.20867 * 15 14 13 17 17 C 1.33992 * 126.90753 * 260.03033 * 16 15 14 18 18 O 1.34449 * 110.15237 * 179.75018 * 17 16 15 19 19 C 1.34812 * 110.88880 * 0.25052 * 18 17 16 20 20 C 1.38942 * 133.49292 * 179.97438 * 19 18 17 21 21 C 1.37848 * 119.81404 * 180.02562 * 20 19 18 22 22 C 1.38748 * 120.68973 * 0.02562 * 21 20 19 23 23 C 1.36736 * 120.41158 * 359.97438 * 22 21 20 24 24 C 1.39406 * 119.72003 * 0.02562 * 23 22 21 25 25 C 1.46847 * 111.19794 * 298.25659 * 14 13 12 26 26 H 0.96998 * 119.99875 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.52505 * 297.50046 * 11 9 7 28 28 H 1.09009 * 109.51743 * 57.62556 * 11 9 7 29 29 H 1.08994 * 109.50407 * 62.29265 * 12 11 9 30 30 H 1.09002 * 109.50021 * 182.37135 * 12 11 9 31 31 H 1.09004 * 109.46345 * 299.16693 * 13 12 11 32 32 H 1.08997 * 109.46703 * 179.19821 * 13 12 11 33 33 H 1.09003 * 109.47160 * 174.21457 * 15 14 13 34 34 H 1.08990 * 109.47738 * 54.21283 * 15 14 13 35 35 H 1.08002 * 124.92763 * 0.02562 * 17 16 15 36 36 H 1.07997 * 120.09663 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.65981 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.79296 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.14137 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46054 * 181.75382 * 25 14 13 41 41 H 1.08989 * 109.46483 * 301.72603 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6222 -2.5571 0.8891 11 6 0.3744 -2.5835 -1.2521 12 6 -0.3413 -3.9369 -1.2746 13 6 0.6986 -5.0591 -1.2371 14 7 1.5109 -4.9348 -0.0200 15 6 2.4279 -6.0740 0.1194 16 6 1.6327 -7.3350 0.3398 17 6 1.4035 -7.9478 1.5091 18 8 0.6489 -9.0440 1.3176 19 6 0.3537 -9.2022 0.0117 20 6 -0.3766 -10.1491 -0.6957 21 6 -0.5010 -10.0366 -2.0639 22 6 0.0967 -8.9861 -2.7453 23 6 0.8196 -8.0438 -2.0679 24 6 0.9565 -8.1409 -0.6839 25 6 2.2447 -3.6630 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3635 -1.7815 -1.2351 28 1 0.9985 -2.4855 -2.1405 29 1 -0.9950 -4.0174 -0.4063 30 1 -0.9342 -4.0199 -2.1855 31 1 1.3434 -4.9862 -2.1130 32 1 0.1919 -6.0241 -1.2386 33 1 3.0877 -5.9072 0.9709 34 1 3.0236 -6.1740 -0.7877 35 1 1.7681 -7.6079 2.4672 36 1 -0.8455 -10.9710 -0.1751 37 1 -1.0695 -10.7739 -2.6113 38 1 -0.0098 -8.9123 -3.8175 39 1 1.2834 -7.2280 -2.6027 40 1 2.8607 -3.6141 0.8991 41 1 2.8820 -3.5967 -0.8804 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:59 Heat of formation + Delta-G solvation = 26.420960 kcal Electronic energy + Delta-G solvation = -22351.916887 eV Core-core repulsion = 19197.674156 eV Total energy + Delta-G solvation = -3154.242732 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.43421 -38.28001 -37.83570 -34.48671 -32.67525 -31.45089 -30.41664 -29.77382 -29.42330 -25.87729 -24.93676 -23.31972 -22.33405 -22.11811 -21.47870 -19.61372 -18.58696 -17.30006 -17.00891 -16.38144 -16.06779 -15.78354 -14.95328 -14.52977 -14.23687 -14.08201 -13.85226 -13.70856 -13.22384 -12.75879 -12.62266 -12.38516 -12.31355 -12.02613 -11.81738 -11.65970 -11.32824 -10.95912 -10.79522 -10.66025 -10.62552 -10.18762 -9.86669 -9.76237 -9.45077 -9.06707 -8.68318 -8.66265 -8.29451 -8.12030 -7.63871 -5.96298 -4.02581 0.90195 1.32832 2.38022 2.83202 3.30331 3.38480 3.41919 3.67644 4.42026 4.47136 4.57507 4.73549 4.87533 4.93759 5.16544 5.33802 5.35314 5.37919 5.47204 5.64373 5.72969 5.81501 5.86609 5.99440 6.12799 6.21063 6.25045 6.29932 6.40399 6.41807 6.44498 6.52549 6.61707 6.76103 6.77436 6.97991 7.18821 7.24363 7.41382 7.69028 7.76507 7.82563 8.09867 8.19254 8.49320 9.01825 9.61726 11.09688 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.003773 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.118522 B = 7420.116526 C = 7832.306518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.063 3.937 3 Si 0.890 3.110 4 H -0.274 1.274 5 H -0.285 1.285 6 H -0.284 1.284 7 C -0.514 4.514 8 H 0.054 0.946 9 C 0.055 3.945 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.117 4.117 13 C 0.057 3.943 14 N -0.533 5.533 15 C 0.122 3.878 16 C -0.158 4.158 17 C 0.015 3.985 18 O -0.196 6.196 19 C 0.048 3.952 20 C -0.109 4.109 21 C -0.098 4.098 22 C -0.139 4.139 23 C -0.068 4.068 24 C -0.118 4.118 25 C 0.067 3.933 26 H 0.259 0.741 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.019 0.981 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.037 0.963 35 H 0.208 0.792 36 H 0.129 0.871 37 H 0.132 0.868 38 H 0.127 0.873 39 H 0.126 0.874 40 H 0.059 0.941 41 H 0.019 0.981 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.755 -18.825 -2.563 19.014 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.139 4.139 3 Si 0.718 3.282 4 H -0.199 1.199 5 H -0.211 1.211 6 H -0.211 1.211 7 C -0.553 4.553 8 H 0.072 0.928 9 C 0.036 3.964 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.155 4.155 13 C -0.070 4.070 14 N -0.258 5.258 15 C -0.006 4.006 16 C -0.160 4.160 17 C -0.050 4.050 18 O -0.098 6.098 19 C 0.001 3.999 20 C -0.128 4.128 21 C -0.116 4.116 22 C -0.157 4.157 23 C -0.086 4.086 24 C -0.119 4.119 25 C -0.059 4.059 26 H 0.069 0.931 27 H 0.108 0.892 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.063 0.937 31 H 0.038 0.962 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.055 0.945 35 H 0.225 0.775 36 H 0.147 0.853 37 H 0.150 0.850 38 H 0.145 0.855 39 H 0.144 0.856 40 H 0.078 0.922 41 H 0.037 0.963 Dipole moment (debyes) X Y Z Total from point charges 0.209 -18.869 -1.964 18.972 hybrid contribution 1.041 1.126 -0.761 1.712 sum 1.250 -17.744 -2.725 17.995 Atomic orbital electron populations 1.69905 1.05845 1.26187 1.50720 1.24937 0.94815 0.98948 0.95156 0.86578 0.80120 0.83995 0.77531 1.19865 1.21115 1.21055 1.21185 0.92842 0.90656 1.50612 0.92794 1.18666 0.92619 0.90222 0.94879 0.94764 1.21647 0.99997 0.94728 0.98431 1.21670 0.97253 0.96493 1.00079 1.22265 0.95638 0.99438 0.89704 1.62044 1.23840 1.01627 1.38242 1.20354 0.92617 0.86824 1.00802 1.21091 1.04500 0.98707 0.91657 1.23758 0.95298 0.86146 0.99834 1.83995 1.58838 1.41986 1.24948 1.19625 1.00538 0.97896 0.81846 1.19893 1.01005 0.98529 0.93356 1.20881 0.99565 0.98457 0.92729 1.20761 0.99513 0.95253 1.00203 1.20411 0.97856 0.98546 0.91810 1.19861 1.01379 0.96108 0.94530 1.22337 0.96467 0.88364 0.98767 0.93129 0.89188 0.95225 0.92235 0.93678 0.96246 0.91417 0.89974 0.94469 0.77515 0.85323 0.85050 0.85508 0.85603 0.92210 0.96280 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.42 11.36 55.43 0.63 -24.79 16 2 C 0.06 1.73 5.30 -17.82 -0.09 1.64 16 3 Si 0.89 21.23 29.54 -169.99 -5.02 16.21 16 4 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 5 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 6 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 7 C -0.51 -14.07 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.46 7.74 -52.49 -0.41 1.05 16 9 C 0.05 1.38 2.26 -91.69 -0.21 1.17 16 10 H 0.03 0.96 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.64 5.03 -26.61 -0.13 -2.77 16 12 C -0.12 -2.38 6.09 -26.65 -0.16 -2.54 16 13 C 0.06 1.05 4.42 -3.83 -0.02 1.03 16 14 N -0.53 -9.94 4.65 -236.12 -1.10 -11.04 16 15 C 0.12 1.86 5.51 -4.98 -0.03 1.83 16 16 C -0.16 -2.28 5.39 -102.66 -0.55 -2.84 16 17 C 0.02 0.19 11.89 29.24 0.35 0.54 16 18 O -0.20 -2.71 10.58 3.90 0.04 -2.67 16 19 C 0.05 0.67 7.42 -38.47 -0.29 0.38 16 20 C -0.11 -1.23 10.07 -39.46 -0.40 -1.62 16 21 C -0.10 -0.97 10.01 -39.54 -0.40 -1.37 16 22 C -0.14 -1.50 9.98 -39.94 -0.40 -1.89 16 23 C -0.07 -0.88 8.33 -39.69 -0.33 -1.21 16 24 C -0.12 -1.70 5.29 -105.16 -0.56 -2.25 16 25 C 0.07 1.42 4.68 -3.83 -0.02 1.40 16 26 H 0.26 7.06 8.31 -40.82 -0.34 6.72 16 27 H 0.09 2.41 6.17 -51.93 -0.32 2.09 16 28 H 0.03 0.71 8.14 -51.92 -0.42 0.28 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.04 0.83 8.14 -51.93 -0.42 0.41 16 31 H 0.02 0.35 7.95 -51.93 -0.41 -0.06 16 32 H 0.07 1.17 4.36 -51.93 -0.23 0.94 16 33 H 0.08 1.13 7.99 -51.93 -0.41 0.71 16 34 H 0.04 0.56 8.12 -51.93 -0.42 0.14 16 35 H 0.21 1.94 8.06 -52.49 -0.42 1.51 16 36 H 0.13 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 38 H 0.13 1.06 8.06 -52.49 -0.42 0.63 16 39 H 0.13 1.59 7.08 -52.48 -0.37 1.22 16 40 H 0.06 1.22 8.02 -51.93 -0.42 0.81 16 41 H 0.02 0.41 8.14 -51.94 -0.42 -0.02 16 LS Contribution 326.38 15.07 4.92 4.92 Total: -1.00 -30.03 326.38 -9.98 -40.02 By element: Atomic # 1 Polarization: 6.16 SS G_CDS: -5.93 Total: 0.23 kcal Atomic # 6 Polarization: -19.35 SS G_CDS: -3.53 Total: -22.88 kcal Atomic # 7 Polarization: -35.36 SS G_CDS: -0.47 Total: -35.83 kcal Atomic # 8 Polarization: -2.71 SS G_CDS: 0.04 Total: -2.67 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.21 kcal Total LS contribution 4.92 Total: 4.92 kcal Total: -30.03 -9.98 -40.02 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.438 kcal (2) G-P(sol) polarization free energy of solvation -30.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.017 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.421 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds