Wall clock time and date at job start Tue Mar 31 2020 06:29:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31509 * 1 3 3 Si 1.86795 * 120.00516 * 2 1 4 4 H 1.48497 * 109.47663 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.46694 * 299.99861 * 3 2 1 6 6 H 1.48500 * 109.47183 * 59.99322 * 3 2 1 7 7 C 1.37881 * 119.99900 * 179.97438 * 2 1 3 8 8 H 1.07993 * 120.00187 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99602 * 0.02562 * 7 2 1 10 10 H 1.09003 * 109.53740 * 300.09064 * 9 7 2 11 11 C 1.53114 * 109.50782 * 60.19436 * 9 7 2 12 12 C 1.53119 * 109.16204 * 177.59344 * 11 9 7 13 13 C 1.53035 * 109.28007 * 302.34544 * 12 11 9 14 14 N 1.46850 * 109.52221 * 59.17879 * 13 12 11 15 15 C 1.46894 * 110.99842 * 174.16133 * 14 13 12 16 16 C 1.50705 * 109.47517 * 294.20867 * 15 14 13 17 17 C 1.33992 * 126.90753 * 260.03033 * 16 15 14 18 18 O 1.34449 * 110.15237 * 179.75018 * 17 16 15 19 19 C 1.34812 * 110.88880 * 0.25052 * 18 17 16 20 20 C 1.38942 * 133.49292 * 179.97438 * 19 18 17 21 21 C 1.37848 * 119.81404 * 180.02562 * 20 19 18 22 22 C 1.38748 * 120.68973 * 0.02562 * 21 20 19 23 23 C 1.36736 * 120.41158 * 359.97438 * 22 21 20 24 24 C 1.39406 * 119.72003 * 0.02562 * 23 22 21 25 25 C 1.46847 * 111.19794 * 298.25659 * 14 13 12 26 26 H 0.96998 * 119.99875 * 0.02562 * 1 2 3 27 27 H 1.08996 * 109.52505 * 297.50046 * 11 9 7 28 28 H 1.09009 * 109.51743 * 57.62556 * 11 9 7 29 29 H 1.08994 * 109.50407 * 62.29265 * 12 11 9 30 30 H 1.09002 * 109.50021 * 182.37135 * 12 11 9 31 31 H 1.09004 * 109.46345 * 299.16693 * 13 12 11 32 32 H 1.08997 * 109.46703 * 179.19821 * 13 12 11 33 33 H 1.09003 * 109.47160 * 174.21457 * 15 14 13 34 34 H 1.08990 * 109.47738 * 54.21283 * 15 14 13 35 35 H 1.08002 * 124.92763 * 0.02562 * 17 16 15 36 36 H 1.07997 * 120.09663 * 0.02562 * 20 19 18 37 37 H 1.08000 * 119.65981 * 180.02562 * 21 20 19 38 38 H 1.07997 * 119.79296 * 179.97438 * 22 21 20 39 39 H 1.08005 * 120.14137 * 179.97438 * 23 22 21 40 40 H 1.09004 * 109.46054 * 181.75382 * 25 14 13 41 41 H 1.08989 * 109.46483 * 301.72603 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3964 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0844 -1.1941 0.0010 9 6 1.2508 -2.4992 0.0005 10 1 0.6222 -2.5571 0.8891 11 6 0.3744 -2.5835 -1.2521 12 6 -0.3413 -3.9369 -1.2746 13 6 0.6986 -5.0591 -1.2371 14 7 1.5109 -4.9348 -0.0200 15 6 2.4279 -6.0740 0.1194 16 6 1.6327 -7.3350 0.3398 17 6 1.4035 -7.9478 1.5091 18 8 0.6489 -9.0440 1.3176 19 6 0.3537 -9.2022 0.0117 20 6 -0.3766 -10.1491 -0.6957 21 6 -0.5010 -10.0366 -2.0639 22 6 0.0967 -8.9861 -2.7453 23 6 0.8196 -8.0438 -2.0679 24 6 0.9565 -8.1409 -0.6839 25 6 2.2447 -3.6630 0.0011 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3635 -1.7815 -1.2351 28 1 0.9985 -2.4855 -2.1405 29 1 -0.9950 -4.0174 -0.4063 30 1 -0.9342 -4.0199 -2.1855 31 1 1.3434 -4.9862 -2.1130 32 1 0.1919 -6.0241 -1.2386 33 1 3.0877 -5.9072 0.9709 34 1 3.0236 -6.1740 -0.7877 35 1 1.7681 -7.6079 2.4672 36 1 -0.8455 -10.9710 -0.1751 37 1 -1.0695 -10.7739 -2.6113 38 1 -0.0098 -8.9123 -3.8175 39 1 1.2834 -7.2280 -2.6027 40 1 2.8607 -3.6141 0.8991 41 1 2.8820 -3.5967 -0.8804 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177044.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:29:58 Heat of formation + Delta-G solvation = 9.828898 kcal Electronic energy + Delta-G solvation = -22352.636373 eV Core-core repulsion = 19197.674156 eV Total energy + Delta-G solvation = -3154.962218 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.39703 -39.83940 -38.74318 -36.07257 -34.32304 -32.86517 -31.62056 -31.34066 -30.41000 -27.21784 -26.90197 -24.22245 -23.71330 -23.42832 -22.99791 -20.77939 -20.32157 -18.47520 -18.18799 -17.93708 -17.21403 -16.75875 -16.51856 -16.21093 -15.68789 -15.15232 -15.09480 -14.90733 -14.68969 -14.41534 -14.11274 -13.88847 -13.37301 -13.25602 -13.18753 -12.96676 -12.86207 -12.61064 -12.48527 -12.33955 -11.84505 -11.82424 -11.64938 -11.41380 -10.97092 -10.84105 -10.65316 -10.37823 -9.56970 -9.19540 -9.01753 -8.07373 -6.21754 0.01254 0.42906 1.37743 1.40905 1.42787 1.53997 1.91987 2.43576 2.78358 3.19717 3.23425 3.53986 3.68053 3.92750 4.14933 4.17851 4.20259 4.28426 4.37888 4.48899 4.50350 4.57386 4.60474 4.66872 4.74740 4.77673 4.87312 4.96269 5.00537 5.10758 5.17448 5.31193 5.36180 5.39390 5.49037 5.50824 5.55384 5.63858 5.76373 5.95942 6.11544 6.20768 6.23735 6.31780 6.46086 6.91324 7.46353 8.97562 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.032172 B = 0.003773 C = 0.003574 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 870.118522 B = 7420.116526 C = 7832.306518 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.917 5.917 2 C 0.013 3.987 3 Si 0.955 3.045 4 H -0.266 1.266 5 H -0.281 1.281 6 H -0.281 1.281 7 C -0.534 4.534 8 H 0.054 0.946 9 C 0.052 3.948 10 H -0.004 1.004 11 C -0.102 4.102 12 C -0.111 4.111 13 C 0.067 3.933 14 N -0.543 5.543 15 C 0.128 3.872 16 C -0.186 4.186 17 C 0.024 3.976 18 O -0.204 6.204 19 C 0.022 3.978 20 C -0.114 4.114 21 C -0.092 4.092 22 C -0.135 4.135 23 C -0.092 4.092 24 C -0.140 4.140 25 C 0.081 3.919 26 H 0.260 0.740 27 H 0.057 0.943 28 H 0.023 0.977 29 H 0.044 0.956 30 H 0.065 0.935 31 H 0.024 0.976 32 H 0.083 0.917 33 H 0.096 0.904 34 H 0.039 0.961 35 H 0.237 0.763 36 H 0.151 0.849 37 H 0.168 0.832 38 H 0.153 0.847 39 H 0.122 0.878 40 H 0.064 0.936 41 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.056 -20.492 -3.259 20.776 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.186 4.186 3 Si 0.781 3.219 4 H -0.190 1.190 5 H -0.207 1.207 6 H -0.207 1.207 7 C -0.573 4.573 8 H 0.072 0.928 9 C 0.034 3.966 10 H 0.014 0.986 11 C -0.140 4.140 12 C -0.149 4.149 13 C -0.061 4.061 14 N -0.268 5.268 15 C 0.001 3.999 16 C -0.187 4.187 17 C -0.042 4.042 18 O -0.106 6.106 19 C -0.025 4.025 20 C -0.132 4.132 21 C -0.110 4.110 22 C -0.152 4.152 23 C -0.110 4.110 24 C -0.141 4.141 25 C -0.046 4.046 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.042 0.958 29 H 0.063 0.937 30 H 0.084 0.916 31 H 0.042 0.958 32 H 0.101 0.899 33 H 0.115 0.885 34 H 0.058 0.942 35 H 0.253 0.747 36 H 0.169 0.831 37 H 0.186 0.814 38 H 0.170 0.830 39 H 0.140 0.860 40 H 0.082 0.918 41 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges 0.518 -20.557 -2.663 20.735 hybrid contribution 0.894 1.561 -0.564 1.885 sum 1.411 -18.996 -3.227 19.320 Atomic orbital electron populations 1.70052 1.07258 1.26978 1.51329 1.25735 0.95634 1.02392 0.94796 0.85551 0.79129 0.79698 0.77529 1.19012 1.20707 1.20693 1.21549 0.93058 0.92022 1.50626 0.92804 1.18590 0.93005 0.91448 0.93598 0.98590 1.21450 0.99102 0.95868 0.97592 1.21585 0.97586 0.95236 1.00447 1.22175 0.95105 0.98997 0.89815 1.61968 1.24590 1.01699 1.38508 1.20328 0.92265 0.85821 1.01520 1.21079 1.06023 0.98958 0.92680 1.24318 0.93934 0.85326 1.00589 1.83989 1.59004 1.42271 1.25310 1.20075 1.01754 0.98856 0.81813 1.20337 1.00300 0.98504 0.94057 1.21347 0.98714 0.98561 0.92353 1.21151 0.98032 0.94502 1.01556 1.20549 0.99268 0.99620 0.91524 1.20080 1.02083 0.96647 0.95258 1.22012 0.95310 0.88418 0.98857 0.93118 0.92457 0.95778 0.93709 0.91597 0.95796 0.89885 0.88544 0.94249 0.74679 0.83110 0.81414 0.82959 0.85987 0.91767 0.96494 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.92 11.36 21.45 0.24 -53.68 16 2 C 0.01 0.73 5.30 84.66 0.45 1.18 16 3 Si 0.96 43.94 29.54 68.60 2.03 45.97 16 4 H -0.27 -11.78 7.11 99.48 0.71 -11.08 16 5 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 6 H -0.28 -12.70 7.11 99.48 0.71 -12.00 16 7 C -0.53 -29.81 8.56 25.60 0.22 -29.59 16 8 H 0.05 2.93 7.74 -2.91 -0.02 2.91 16 9 C 0.05 2.71 2.26 -11.49 -0.03 2.69 16 10 H 0.00 -0.24 8.14 -2.39 -0.02 -0.26 16 11 C -0.10 -5.03 5.03 30.67 0.15 -4.87 16 12 C -0.11 -4.53 6.09 30.65 0.19 -4.34 16 13 C 0.07 2.40 4.42 86.32 0.38 2.78 16 14 N -0.54 -20.10 4.65 -900.94 -4.19 -24.29 16 15 C 0.13 3.78 5.51 85.56 0.47 4.25 16 16 C -0.19 -5.21 5.39 -18.59 -0.10 -5.31 16 17 C 0.02 0.58 11.89 66.85 0.79 1.37 16 18 O -0.20 -5.42 10.58 -8.97 -0.09 -5.51 16 19 C 0.02 0.57 7.42 22.99 0.17 0.74 16 20 C -0.11 -2.27 10.07 22.35 0.23 -2.04 16 21 C -0.09 -1.51 10.01 22.30 0.22 -1.28 16 22 C -0.13 -2.53 9.98 22.04 0.22 -2.31 16 23 C -0.09 -2.24 8.33 22.20 0.19 -2.06 16 24 C -0.14 -3.88 5.29 -20.21 -0.11 -3.99 16 25 C 0.08 3.45 4.68 86.33 0.40 3.86 16 26 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 27 H 0.06 3.19 6.17 -2.39 -0.01 3.18 16 28 H 0.02 1.17 8.14 -2.38 -0.02 1.15 16 29 H 0.04 1.94 8.14 -2.39 -0.02 1.93 16 30 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 31 H 0.02 0.84 7.95 -2.39 -0.02 0.82 16 32 H 0.08 2.79 4.36 -2.39 -0.01 2.78 16 33 H 0.10 2.52 7.99 -2.39 -0.02 2.50 16 34 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 35 H 0.24 3.97 8.06 -2.91 -0.02 3.94 16 36 H 0.15 2.22 8.06 -2.91 -0.02 2.20 16 37 H 0.17 1.48 8.06 -2.91 -0.02 1.46 16 38 H 0.15 2.00 8.06 -2.91 -0.02 1.98 16 39 H 0.12 2.97 7.08 -2.91 -0.02 2.95 16 40 H 0.06 2.63 8.02 -2.38 -0.02 2.61 16 41 H 0.02 0.72 8.14 -2.39 -0.02 0.70 16 Total: -1.00 -66.28 326.38 2.85 -63.43 By element: Atomic # 1 Polarization: 12.00 SS G_CDS: 1.01 Total: 13.01 kcal Atomic # 6 Polarization: -42.78 SS G_CDS: 3.85 Total: -38.93 kcal Atomic # 7 Polarization: -74.02 SS G_CDS: -3.94 Total: -77.97 kcal Atomic # 8 Polarization: -5.42 SS G_CDS: -0.09 Total: -5.51 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 2.03 Total: 45.97 kcal Total: -66.28 2.85 -63.43 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177044.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.258 kcal (2) G-P(sol) polarization free energy of solvation -66.284 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds