Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99775 * 2 1 4 4 H 1.48505 * 109.47482 * 240.00230 * 3 2 1 5 5 H 1.48497 * 109.47395 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47172 * 120.00101 * 3 2 1 7 7 C 1.37879 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99629 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53271 * 60.10188 * 9 7 2 11 11 C 1.53113 * 109.50554 * 300.00028 * 9 7 2 12 12 C 1.53117 * 109.16106 * 182.40359 * 11 9 7 13 13 C 1.53034 * 109.27592 * 57.65808 * 12 11 9 14 14 N 1.46850 * 109.52387 * 300.81748 * 13 12 11 15 15 C 1.46893 * 110.99987 * 185.84234 * 14 13 12 16 16 C 1.50700 * 109.47276 * 66.04875 * 15 14 13 17 17 C 1.34002 * 126.90711 * 259.97333 * 16 15 14 18 18 O 1.34444 * 110.15670 * 179.97438 * 17 16 15 19 19 C 1.34812 * 110.88889 * 0.02562 * 18 17 16 20 20 C 1.38942 * 133.49744 * 180.02562 * 19 18 17 21 21 C 1.37842 * 119.81955 * 179.97438 * 20 19 18 22 22 C 1.38749 * 120.68566 * 359.97438 * 21 20 19 23 23 C 1.36734 * 120.41396 * 0.26667 * 22 21 20 24 24 C 1.39406 * 119.71990 * 359.48609 * 23 22 21 25 25 C 1.46840 * 111.19819 * 61.74292 * 14 13 12 26 26 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.52062 * 62.50109 * 11 9 7 28 28 H 1.08999 * 109.57351 * 302.34340 * 11 9 7 29 29 H 1.08992 * 109.50414 * 297.71249 * 12 11 9 30 30 H 1.09005 * 109.50194 * 177.59651 * 12 11 9 31 31 H 1.09005 * 109.45931 * 180.80573 * 13 12 11 32 32 H 1.09003 * 109.46862 * 60.83481 * 13 12 11 33 33 H 1.09000 * 109.47685 * 306.04578 * 15 14 13 34 34 H 1.09003 * 109.47033 * 186.04424 * 15 14 13 35 35 H 1.08002 * 124.91851 * 359.97438 * 17 16 15 36 36 H 1.07998 * 120.09021 * 359.97349 * 20 19 18 37 37 H 1.08004 * 119.65940 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.78919 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.14283 * 179.71962 * 23 22 21 40 40 H 1.09003 * 109.46546 * 58.27517 * 25 14 13 41 41 H 1.08994 * 109.46670 * 178.24591 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6251 -2.5585 -0.8909 11 6 0.3711 -2.5814 1.2497 12 6 -0.3446 -3.9348 1.2724 13 6 0.6956 -5.0569 1.2399 14 7 1.5114 -4.9347 0.0250 15 6 2.4289 -6.0740 -0.1098 16 6 1.6346 -7.3345 -0.3366 17 6 1.3241 -8.2651 0.5761 18 8 0.6041 -9.2485 0.0086 19 6 0.4104 -9.0067 -1.3034 20 6 -0.2499 -9.6930 -2.3151 21 6 -0.2736 -9.1751 -3.5923 22 6 0.3555 -7.9725 -3.8806 23 6 1.0149 -7.2839 -2.9004 24 6 1.0453 -7.7894 -1.6016 25 6 2.2450 -3.6629 0.0037 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3669 -1.7794 1.2290 28 1 0.9917 -2.4824 2.1403 29 1 -0.9957 -4.0168 0.4022 30 1 -0.9397 -4.0166 2.1819 31 1 0.1888 -6.0220 1.2415 32 1 1.3377 -4.9825 2.1175 33 1 3.0188 -6.1753 0.8011 34 1 3.0942 -5.9065 -0.9568 35 1 1.6108 -8.2303 1.6168 36 1 -0.7431 -10.6297 -2.1014 37 1 -0.7873 -9.7109 -4.3769 38 1 0.3282 -7.5802 -4.8864 39 1 1.5070 -6.3504 -3.1306 40 1 2.8799 -3.5949 0.8872 41 1 2.8637 -3.6153 -0.8924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000597177045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = 24.430659 kcal Electronic energy + Delta-G solvation = -22227.460576 eV Core-core repulsion = 19073.131538 eV Total energy + Delta-G solvation = -3154.329038 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.38613 -38.21928 -37.79938 -34.47358 -32.71870 -31.32769 -30.36355 -29.90224 -29.21335 -25.97320 -24.91539 -23.25888 -22.30205 -22.03426 -21.38252 -19.74573 -18.59084 -17.24341 -16.92046 -16.37446 -16.03759 -15.72058 -14.96430 -14.52860 -14.23473 -14.12312 -13.81161 -13.56256 -13.16348 -12.92505 -12.53299 -12.29707 -12.23452 -12.13504 -11.75227 -11.67381 -11.25233 -10.92860 -10.79912 -10.68363 -10.67483 -10.14995 -9.88156 -9.81653 -9.46061 -9.04447 -8.70094 -8.58825 -8.29429 -8.10987 -7.64156 -5.96147 -4.02702 0.96840 1.41024 2.38038 2.84273 3.32610 3.37572 3.39700 3.77174 4.41376 4.51709 4.61439 4.68852 4.96885 5.03931 5.17484 5.33711 5.37578 5.46195 5.57171 5.65902 5.68133 5.80226 5.85671 6.03590 6.09878 6.25853 6.27507 6.32123 6.40538 6.48224 6.51395 6.54191 6.68414 6.73724 6.76555 6.97413 7.21024 7.23966 7.40889 7.67579 7.75779 7.81992 8.09636 8.19088 8.48957 9.01223 9.61537 11.09699 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.003865 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.310255 B = 7242.219317 C = 7660.347324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.888 5.888 2 C 0.064 3.936 3 Si 0.890 3.110 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.278 1.278 7 C -0.516 4.516 8 H 0.053 0.947 9 C 0.056 3.944 10 H 0.034 0.966 11 C -0.110 4.110 12 C -0.116 4.116 13 C 0.063 3.937 14 N -0.532 5.532 15 C 0.121 3.879 16 C -0.149 4.149 17 C -0.004 4.004 18 O -0.197 6.197 19 C 0.046 3.954 20 C -0.114 4.114 21 C -0.097 4.097 22 C -0.142 4.142 23 C -0.055 4.055 24 C -0.109 4.109 25 C 0.068 3.932 26 H 0.260 0.740 27 H 0.090 0.910 28 H 0.029 0.971 29 H 0.059 0.941 30 H 0.045 0.955 31 H 0.057 0.943 32 H 0.022 0.978 33 H 0.038 0.962 34 H 0.081 0.919 35 H 0.203 0.797 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.127 0.873 39 H 0.130 0.870 40 H 0.019 0.981 41 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.989 -17.780 -2.410 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.138 4.138 3 Si 0.718 3.282 4 H -0.203 1.203 5 H -0.213 1.213 6 H -0.204 1.204 7 C -0.555 4.555 8 H 0.071 0.929 9 C 0.037 3.963 10 H 0.052 0.948 11 C -0.148 4.148 12 C -0.154 4.154 13 C -0.065 4.065 14 N -0.257 5.257 15 C -0.007 4.007 16 C -0.151 4.151 17 C -0.069 4.069 18 O -0.098 6.098 19 C -0.001 4.001 20 C -0.132 4.132 21 C -0.115 4.115 22 C -0.160 4.160 23 C -0.073 4.073 24 C -0.111 4.111 25 C -0.058 4.058 26 H 0.070 0.930 27 H 0.109 0.891 28 H 0.048 0.952 29 H 0.078 0.922 30 H 0.064 0.936 31 H 0.075 0.925 32 H 0.040 0.960 33 H 0.056 0.944 34 H 0.100 0.900 35 H 0.219 0.781 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.145 0.855 39 H 0.148 0.852 40 H 0.037 0.963 41 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 0.422 -17.872 -2.681 18.077 hybrid contribution 1.049 1.080 0.818 1.713 sum 1.471 -16.792 -1.863 16.959 Atomic orbital electron populations 1.69880 1.05843 1.26422 1.50522 1.24928 0.94810 0.98911 0.95119 0.86696 0.79618 0.83335 0.78537 1.20303 1.21325 1.20404 1.21108 0.92770 0.90687 1.50907 0.92905 1.18650 0.92579 0.90179 0.94872 0.94792 1.21650 1.00031 0.94708 0.98429 1.21661 0.97191 0.96454 1.00126 1.22038 0.95673 0.98904 0.89889 1.61976 1.23758 1.01642 1.38294 1.20369 0.92676 0.87034 1.00573 1.21113 1.04170 0.98113 0.91715 1.23707 0.96827 0.87780 0.98605 1.83974 1.61226 1.44166 1.20453 1.19657 1.01107 0.96289 0.83064 1.19852 1.02204 1.00836 0.90344 1.20883 0.99289 0.96134 0.95176 1.20782 0.99776 0.95794 0.99639 1.20398 0.97292 0.99178 0.90444 1.19758 1.01373 0.95262 0.94660 1.22328 0.96459 0.88290 0.98766 0.93006 0.89133 0.95202 0.92189 0.93637 0.92469 0.96017 0.94417 0.90039 0.78055 0.85479 0.85138 0.85502 0.85171 0.96252 0.92235 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.36 11.35 55.43 0.63 -24.73 16 2 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 3 Si 0.89 21.19 29.54 -169.99 -5.02 16.17 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.08 8.56 -34.44 -0.29 -14.37 16 8 H 0.05 1.41 7.74 -52.49 -0.41 1.01 16 9 C 0.06 1.40 2.26 -91.69 -0.21 1.19 16 10 H 0.03 0.95 8.14 -51.93 -0.42 0.53 16 11 C -0.11 -2.62 5.02 -26.61 -0.13 -2.75 16 12 C -0.12 -2.33 6.09 -26.65 -0.16 -2.49 16 13 C 0.06 1.12 5.31 -3.83 -0.02 1.10 16 14 N -0.53 -9.81 4.65 -236.12 -1.10 -10.90 16 15 C 0.12 1.84 5.51 -4.98 -0.03 1.81 16 16 C -0.15 -2.16 4.96 -102.66 -0.51 -2.67 16 17 C 0.00 -0.05 11.06 29.24 0.32 0.28 16 18 O -0.20 -2.73 10.58 3.91 0.04 -2.69 16 19 C 0.05 0.65 7.42 -38.47 -0.29 0.36 16 20 C -0.11 -1.33 10.07 -39.47 -0.40 -1.72 16 21 C -0.10 -1.01 10.01 -39.54 -0.40 -1.41 16 22 C -0.14 -1.63 9.98 -39.94 -0.40 -2.03 16 23 C -0.06 -0.76 10.05 -39.69 -0.40 -1.16 16 24 C -0.11 -1.64 6.38 -105.16 -0.67 -2.31 16 25 C 0.07 1.43 4.68 -3.84 -0.02 1.41 16 26 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 27 H 0.09 2.41 6.15 -51.93 -0.32 2.09 16 28 H 0.03 0.71 8.14 -51.93 -0.42 0.28 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 30 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 31 H 0.06 0.94 6.48 -51.93 -0.34 0.60 16 32 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 33 H 0.04 0.52 8.12 -51.93 -0.42 0.10 16 34 H 0.08 1.20 7.98 -51.93 -0.41 0.78 16 35 H 0.20 1.85 8.06 -52.49 -0.42 1.43 16 36 H 0.13 1.17 8.06 -52.49 -0.42 0.75 16 37 H 0.13 0.96 8.06 -52.48 -0.42 0.54 16 38 H 0.13 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.13 1.77 8.06 -52.48 -0.42 1.35 16 40 H 0.02 0.41 8.14 -51.93 -0.42 -0.02 16 41 H 0.06 1.22 8.01 -51.93 -0.42 0.81 16 LS Contribution 332.06 15.07 5.00 5.00 Total: -1.00 -29.75 332.06 -10.24 -39.98 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -6.10 Total: 0.28 kcal Atomic # 6 Polarization: -19.42 SS G_CDS: -3.69 Total: -23.11 kcal Atomic # 7 Polarization: -35.16 SS G_CDS: -0.47 Total: -35.63 kcal Atomic # 8 Polarization: -2.73 SS G_CDS: 0.04 Total: -2.69 kcal Atomic # 14 Polarization: 21.19 SS G_CDS: -5.02 Total: 16.17 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -29.75 -10.24 -39.98 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.412 kcal (2) G-P(sol) polarization free energy of solvation -29.746 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.981 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.431 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds