Wall clock time and date at job start Tue Mar 31 2020 06:30:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86801 * 119.99775 * 2 1 4 4 H 1.48505 * 109.47482 * 240.00230 * 3 2 1 5 5 H 1.48497 * 109.47395 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.47172 * 120.00101 * 3 2 1 7 7 C 1.37879 * 120.00528 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00111 * 179.97438 * 7 2 1 9 9 C 1.50701 * 119.99629 * 359.97438 * 7 2 1 10 10 H 1.09002 * 109.53271 * 60.10188 * 9 7 2 11 11 C 1.53113 * 109.50554 * 300.00028 * 9 7 2 12 12 C 1.53117 * 109.16106 * 182.40359 * 11 9 7 13 13 C 1.53034 * 109.27592 * 57.65808 * 12 11 9 14 14 N 1.46850 * 109.52387 * 300.81748 * 13 12 11 15 15 C 1.46893 * 110.99987 * 185.84234 * 14 13 12 16 16 C 1.50700 * 109.47276 * 66.04875 * 15 14 13 17 17 C 1.34002 * 126.90711 * 259.97333 * 16 15 14 18 18 O 1.34444 * 110.15670 * 179.97438 * 17 16 15 19 19 C 1.34812 * 110.88889 * 0.02562 * 18 17 16 20 20 C 1.38942 * 133.49744 * 180.02562 * 19 18 17 21 21 C 1.37842 * 119.81955 * 179.97438 * 20 19 18 22 22 C 1.38749 * 120.68566 * 359.97438 * 21 20 19 23 23 C 1.36734 * 120.41396 * 0.26667 * 22 21 20 24 24 C 1.39406 * 119.71990 * 359.48609 * 23 22 21 25 25 C 1.46840 * 111.19819 * 61.74292 * 14 13 12 26 26 H 0.96997 * 120.00153 * 0.02562 * 1 2 3 27 27 H 1.09001 * 109.52062 * 62.50109 * 11 9 7 28 28 H 1.08999 * 109.57351 * 302.34340 * 11 9 7 29 29 H 1.08992 * 109.50414 * 297.71249 * 12 11 9 30 30 H 1.09005 * 109.50194 * 177.59651 * 12 11 9 31 31 H 1.09005 * 109.45931 * 180.80573 * 13 12 11 32 32 H 1.09003 * 109.46862 * 60.83481 * 13 12 11 33 33 H 1.09000 * 109.47685 * 306.04578 * 15 14 13 34 34 H 1.09003 * 109.47033 * 186.04424 * 15 14 13 35 35 H 1.08002 * 124.91851 * 359.97438 * 17 16 15 36 36 H 1.07998 * 120.09021 * 359.97349 * 20 19 18 37 37 H 1.08004 * 119.65940 * 179.97438 * 21 20 19 38 38 H 1.08002 * 119.78919 * 179.97438 * 22 21 20 39 39 H 1.08003 * 120.14283 * 179.71962 * 23 22 21 40 40 H 1.09003 * 109.46546 * 58.27517 * 25 14 13 41 41 H 1.08994 * 109.46670 * 178.24591 * 25 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 -0.0005 8 1 3.0845 -1.1939 -0.0010 9 6 1.2512 -2.4991 -0.0005 10 1 0.6251 -2.5585 -0.8909 11 6 0.3711 -2.5814 1.2497 12 6 -0.3446 -3.9348 1.2724 13 6 0.6956 -5.0569 1.2399 14 7 1.5114 -4.9347 0.0250 15 6 2.4289 -6.0740 -0.1098 16 6 1.6346 -7.3345 -0.3366 17 6 1.3241 -8.2651 0.5761 18 8 0.6041 -9.2485 0.0086 19 6 0.4104 -9.0067 -1.3034 20 6 -0.2499 -9.6930 -2.3151 21 6 -0.2736 -9.1751 -3.5923 22 6 0.3555 -7.9725 -3.8806 23 6 1.0149 -7.2839 -2.9004 24 6 1.0453 -7.7894 -1.6016 25 6 2.2450 -3.6629 0.0037 26 1 -0.4850 0.8400 -0.0004 27 1 -0.3669 -1.7794 1.2290 28 1 0.9917 -2.4824 2.1403 29 1 -0.9957 -4.0168 0.4022 30 1 -0.9397 -4.0166 2.1819 31 1 0.1888 -6.0220 1.2415 32 1 1.3377 -4.9825 2.1175 33 1 3.0188 -6.1753 0.8011 34 1 3.0942 -5.9065 -0.9568 35 1 1.6108 -8.2303 1.6168 36 1 -0.7431 -10.6297 -2.1014 37 1 -0.7873 -9.7109 -4.3769 38 1 0.3282 -7.5802 -4.8864 39 1 1.5070 -6.3504 -3.1306 40 1 2.8799 -3.5949 0.8872 41 1 2.8637 -3.6153 -0.8924 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000597177045.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:30:01 Heat of formation + Delta-G solvation = 8.299566 kcal Electronic energy + Delta-G solvation = -22228.160073 eV Core-core repulsion = 19073.131538 eV Total energy + Delta-G solvation = -3155.028534 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -43.36989 -39.80039 -38.71396 -36.05856 -34.34723 -32.78241 -31.69435 -31.28465 -30.29301 -27.28663 -26.90321 -24.21325 -23.66728 -23.34333 -22.94597 -20.83565 -20.35442 -18.45848 -18.16574 -17.86291 -17.17977 -16.76116 -16.52576 -16.21644 -15.68761 -15.26115 -14.96629 -14.86600 -14.63279 -14.44657 -14.12387 -13.79453 -13.43262 -13.26528 -13.16575 -12.90860 -12.81828 -12.59977 -12.54579 -12.34140 -11.87147 -11.75851 -11.72292 -11.38868 -11.01231 -10.80143 -10.65455 -10.37436 -9.54475 -9.18918 -8.98562 -8.07022 -6.21701 0.03396 0.45449 1.37080 1.42464 1.43539 1.51203 1.91172 2.43616 2.81500 3.19808 3.22068 3.60439 3.65734 3.99722 4.13692 4.18781 4.21067 4.27295 4.39447 4.51418 4.54949 4.58750 4.63701 4.67671 4.70268 4.77543 4.88527 4.97778 5.03649 5.11523 5.18229 5.33057 5.37622 5.40568 5.51006 5.52695 5.60617 5.63754 5.76410 5.96566 6.12722 6.21182 6.25042 6.35265 6.46559 6.91203 7.46388 8.97433 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.025675 B = 0.003865 C = 0.003654 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1090.310255 B = 7242.219317 C = 7660.347324 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.916 5.916 2 C 0.014 3.986 3 Si 0.954 3.046 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.271 1.271 7 C -0.537 4.537 8 H 0.053 0.947 9 C 0.054 3.946 10 H -0.008 1.008 11 C -0.102 4.102 12 C -0.110 4.110 13 C 0.070 3.930 14 N -0.545 5.545 15 C 0.128 3.872 16 C -0.178 4.178 17 C 0.013 3.987 18 O -0.202 6.202 19 C 0.022 3.978 20 C -0.116 4.116 21 C -0.092 4.092 22 C -0.139 4.139 23 C -0.085 4.085 24 C -0.135 4.135 25 C 0.083 3.917 26 H 0.260 0.740 27 H 0.056 0.944 28 H 0.026 0.974 29 H 0.041 0.959 30 H 0.068 0.932 31 H 0.077 0.923 32 H 0.034 0.966 33 H 0.057 0.943 34 H 0.078 0.922 35 H 0.238 0.762 36 H 0.153 0.847 37 H 0.168 0.832 38 H 0.149 0.851 39 H 0.118 0.882 40 H 0.021 0.979 41 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.321 -19.565 -2.114 19.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.556 5.556 2 C -0.185 4.185 3 Si 0.780 3.220 4 H -0.196 1.196 5 H -0.210 1.210 6 H -0.196 1.196 7 C -0.575 4.575 8 H 0.072 0.928 9 C 0.035 3.965 10 H 0.010 0.990 11 C -0.140 4.140 12 C -0.148 4.148 13 C -0.058 4.058 14 N -0.270 5.270 15 C 0.001 3.999 16 C -0.180 4.180 17 C -0.052 4.052 18 O -0.103 6.103 19 C -0.025 4.025 20 C -0.134 4.134 21 C -0.110 4.110 22 C -0.157 4.157 23 C -0.103 4.103 24 C -0.136 4.136 25 C -0.044 4.044 26 H 0.069 0.931 27 H 0.075 0.925 28 H 0.044 0.956 29 H 0.060 0.940 30 H 0.087 0.913 31 H 0.095 0.905 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.096 0.904 35 H 0.254 0.746 36 H 0.170 0.830 37 H 0.185 0.815 38 H 0.166 0.834 39 H 0.136 0.864 40 H 0.039 0.961 41 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 0.764 -19.678 -2.390 19.837 hybrid contribution 0.900 1.580 0.654 1.932 sum 1.664 -18.098 -1.736 18.257 Atomic orbital electron populations 1.70038 1.07259 1.27108 1.51169 1.25727 0.95620 1.02357 0.94751 0.85673 0.78401 0.79083 0.78849 1.19640 1.21045 1.19573 1.21501 0.93049 0.92091 1.50901 0.92837 1.18567 0.92964 0.91402 0.93563 0.98979 1.21446 0.99102 0.95963 0.97520 1.21570 0.97579 0.95208 1.00446 1.21974 0.95154 0.98604 0.90040 1.61860 1.24598 1.01590 1.38968 1.20304 0.92256 0.86008 1.01322 1.21086 1.05884 0.98586 0.92409 1.24320 0.94852 0.86499 0.99567 1.83977 1.61346 1.44495 1.20516 1.20051 1.02180 0.96656 0.83566 1.20308 1.01392 1.01524 0.90149 1.21331 0.98383 0.95569 0.95721 1.21133 0.98547 0.95949 1.00100 1.20509 0.99025 0.99606 0.91161 1.20044 1.02197 0.96137 0.95228 1.21973 0.95273 0.88434 0.98713 0.93108 0.92535 0.95551 0.93982 0.91342 0.90451 0.94794 0.92495 0.90357 0.74609 0.82974 0.81465 0.83369 0.86380 0.96074 0.92456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -53.97 11.35 21.45 0.24 -53.72 16 2 C 0.01 0.80 5.30 84.66 0.45 1.25 16 3 Si 0.95 43.91 29.54 68.60 2.03 45.94 16 4 H -0.27 -12.13 7.11 99.48 0.71 -11.42 16 5 H -0.28 -12.89 7.11 99.48 0.71 -12.18 16 6 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 7 C -0.54 -30.00 8.56 25.60 0.22 -29.78 16 8 H 0.05 2.90 7.74 -2.91 -0.02 2.88 16 9 C 0.05 2.79 2.26 -11.49 -0.03 2.76 16 10 H -0.01 -0.47 8.14 -2.39 -0.02 -0.49 16 11 C -0.10 -4.98 5.02 30.67 0.15 -4.83 16 12 C -0.11 -4.40 6.09 30.64 0.19 -4.21 16 13 C 0.07 2.39 5.31 86.32 0.46 2.85 16 14 N -0.55 -19.92 4.65 -900.94 -4.19 -24.10 16 15 C 0.13 3.75 5.51 85.56 0.47 4.22 16 16 C -0.18 -4.94 4.96 -18.59 -0.09 -5.04 16 17 C 0.01 0.30 11.06 66.85 0.74 1.04 16 18 O -0.20 -5.22 10.58 -8.92 -0.09 -5.31 16 19 C 0.02 0.60 7.42 22.99 0.17 0.77 16 20 C -0.12 -2.43 10.07 22.34 0.23 -2.20 16 21 C -0.09 -1.69 10.01 22.30 0.22 -1.47 16 22 C -0.14 -3.03 9.98 22.04 0.22 -2.81 16 23 C -0.08 -2.36 10.05 22.20 0.22 -2.14 16 24 C -0.14 -3.98 6.38 -20.21 -0.13 -4.11 16 25 C 0.08 3.54 4.68 86.33 0.40 3.94 16 26 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 27 H 0.06 3.13 6.15 -2.39 -0.01 3.12 16 28 H 0.03 1.26 8.14 -2.39 -0.02 1.24 16 29 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 30 H 0.07 2.39 8.14 -2.38 -0.02 2.37 16 31 H 0.08 2.36 6.48 -2.38 -0.02 2.35 16 32 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.06 1.45 8.12 -2.39 -0.02 1.43 16 34 H 0.08 2.30 7.98 -2.39 -0.02 2.28 16 35 H 0.24 3.45 8.06 -2.91 -0.02 3.42 16 36 H 0.15 2.33 8.06 -2.91 -0.02 2.31 16 37 H 0.17 1.78 8.06 -2.91 -0.02 1.75 16 38 H 0.15 2.46 8.06 -2.91 -0.02 2.43 16 39 H 0.12 3.41 8.06 -2.91 -0.02 3.39 16 40 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 41 H 0.06 2.41 8.01 -2.39 -0.02 2.39 16 Total: -1.00 -66.40 332.06 2.89 -63.51 By element: Atomic # 1 Polarization: 12.46 SS G_CDS: 1.01 Total: 13.47 kcal Atomic # 6 Polarization: -43.67 SS G_CDS: 3.90 Total: -39.78 kcal Atomic # 7 Polarization: -73.88 SS G_CDS: -3.94 Total: -77.82 kcal Atomic # 8 Polarization: -5.22 SS G_CDS: -0.09 Total: -5.31 kcal Atomic # 14 Polarization: 43.91 SS G_CDS: 2.03 Total: 45.94 kcal Total: -66.40 2.89 -63.51 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000597177045.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.805 kcal (2) G-P(sol) polarization free energy of solvation -66.399 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.506 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds