Wall clock time and date at job start Tue Mar 31 2020 06:28:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86810 * 119.99652 * 2 1 4 4 H 1.48500 * 109.46710 * 179.97438 * 3 2 1 5 5 H 1.48496 * 109.47158 * 299.99767 * 3 2 1 6 6 H 1.48502 * 109.46769 * 60.00225 * 3 2 1 7 7 C 1.37876 * 120.00420 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99985 * 179.97438 * 7 2 1 9 9 C 1.50700 * 119.99653 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.47008 * 179.97438 * 9 7 2 11 11 C 1.52996 * 109.47301 * 179.97438 * 10 9 7 12 12 N 1.46498 * 109.47059 * 179.97438 * 11 10 9 13 13 C 1.34777 * 119.99828 * 179.72339 * 12 11 10 14 14 O 1.21283 * 120.00222 * 0.28168 * 13 12 11 15 15 C 1.50703 * 120.00290 * 180.27728 * 13 12 11 16 16 H 1.08999 * 115.53692 * 325.59183 * 15 13 12 17 17 C 1.53039 * 117.48319 * 180.02562 * 15 13 12 18 18 H 1.09002 * 119.41070 * 140.82717 * 17 15 13 19 19 C 1.53438 * 118.58131 * 343.84424 * 17 15 13 20 20 C 1.50971 * 107.03598 * 297.00766 * 19 17 15 21 21 C 1.38781 * 129.72409 * 179.64376 * 20 19 17 22 22 C 1.38014 * 120.31210 * 180.09716 * 21 20 19 23 23 C 1.38249 * 119.87801 * 359.97438 * 22 21 20 24 24 C 1.38016 * 119.88607 * 359.97438 * 23 22 21 25 25 C 1.37807 * 110.46009 * 359.70727 * 20 19 17 26 26 C 1.50943 * 110.48461 * 359.90988 * 25 20 19 27 27 H 1.09000 * 117.44277 * 220.74656 * 26 25 20 28 28 H 0.97000 * 120.00497 * 0.02562 * 1 2 3 29 29 H 1.08990 * 109.47431 * 59.99962 * 9 7 2 30 30 H 1.09002 * 109.47072 * 299.99242 * 9 7 2 31 31 H 1.09004 * 109.47038 * 59.99609 * 10 9 7 32 32 H 1.09000 * 109.46939 * 300.00262 * 10 9 7 33 33 H 1.09004 * 109.47066 * 60.00027 * 11 10 9 34 34 H 1.08994 * 109.46974 * 300.00175 * 11 10 9 35 35 H 0.97001 * 120.00384 * 0.02562 * 12 11 10 36 36 H 1.09004 * 109.92041 * 56.35528 * 19 17 15 37 37 H 1.09003 * 109.91909 * 177.66096 * 19 17 15 38 38 H 1.08002 * 119.84575 * 0.09298 * 21 20 19 39 39 H 1.08002 * 120.05923 * 179.97438 * 22 21 20 40 40 H 1.07997 * 120.05689 * 179.97438 * 23 22 21 41 41 H 1.08002 * 119.84017 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6179 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8904 2.3965 -1.2125 6 1 1.8903 2.3965 1.2126 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4326 -6.1005 0.0006 13 6 1.9834 -7.3712 0.0066 14 8 0.7910 -7.5929 0.0074 15 6 2.9628 -8.5166 0.0123 16 1 3.8849 -8.3492 -0.5441 17 6 2.3898 -9.9357 0.0184 18 1 2.8722 -10.7103 -0.5776 19 6 0.9147 -10.1301 0.3935 20 6 0.7568 -9.6676 1.8219 21 6 -0.3763 -9.6314 2.6224 22 6 -0.2991 -9.1627 3.9182 23 6 0.9125 -8.7274 4.4220 24 6 2.0406 -8.7637 3.6277 25 6 1.9646 -9.2339 2.3241 26 6 3.0482 -9.3659 1.2815 27 1 4.0230 -9.7240 1.6127 28 1 -0.4851 0.8400 -0.0004 29 1 0.6249 -2.5571 -0.8896 30 1 0.6242 -2.5567 0.8904 31 1 2.8722 -3.6042 0.8905 32 1 2.8721 -3.6042 -0.8894 33 1 0.8536 -5.0451 -0.8886 34 1 0.8542 -5.0445 0.8913 35 1 3.3863 -5.9232 0.0002 36 1 0.2826 -9.5316 -0.2627 37 1 0.6466 -11.1835 0.3124 38 1 -1.3230 -9.9716 2.2295 39 1 -1.1835 -9.1359 4.5374 40 1 0.9762 -8.3597 5.4355 41 1 2.9868 -8.4239 4.0222 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599341642.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:10 Heat of formation + Delta-G solvation = 5.454197 kcal Electronic energy + Delta-G solvation = -21582.372868 eV Core-core repulsion = 18427.220950 eV Total energy + Delta-G solvation = -3155.151919 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.31081 -38.84738 -36.88456 -35.22623 -33.30390 -31.89138 -31.15016 -30.50878 -27.83097 -26.92073 -24.59903 -23.05885 -22.17117 -21.14105 -20.66144 -20.47566 -19.31179 -17.19916 -16.45930 -16.03247 -15.80030 -15.39273 -15.10238 -14.85030 -14.57360 -14.39326 -13.77634 -13.57560 -13.36535 -12.99738 -12.69342 -12.37666 -12.25380 -11.93000 -11.80069 -11.67915 -11.31565 -10.92588 -10.85556 -10.72159 -10.70535 -10.56419 -10.39800 -9.85902 -9.66337 -9.24883 -9.07885 -8.76302 -8.70679 -8.42679 -8.37337 -6.01674 -4.04757 1.29919 1.43629 2.63499 3.29921 3.34213 3.37566 3.41231 3.50973 3.82424 4.23961 4.39445 4.44445 4.68625 4.78261 4.96177 4.99185 5.02704 5.08619 5.28235 5.34137 5.41068 5.51643 5.62853 5.70428 5.76397 5.79841 5.80845 5.93876 6.09081 6.18409 6.23130 6.43992 6.51896 6.56247 6.61765 6.66031 6.86982 7.00921 7.02516 7.64133 7.76690 7.78134 7.97231 8.38053 8.48904 9.02157 9.59490 11.09665 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022750 B = 0.003192 C = 0.003022 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1230.465837 B = 8769.284908 C = 9262.094155 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.892 3.108 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.284 1.284 7 C -0.521 4.521 8 H 0.056 0.944 9 C 0.023 3.977 10 C -0.120 4.120 11 C 0.119 3.881 12 N -0.723 5.723 13 C 0.535 3.465 14 O -0.532 6.532 15 C -0.157 4.157 16 H 0.132 0.868 17 C -0.122 4.122 18 H 0.129 0.871 19 C -0.061 4.061 20 C -0.055 4.055 21 C -0.110 4.110 22 C -0.113 4.113 23 C -0.130 4.130 24 C -0.097 4.097 25 C -0.085 4.085 26 C -0.097 4.097 27 H 0.124 0.876 28 H 0.260 0.740 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.053 0.947 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.397 0.603 36 H 0.111 0.889 37 H 0.076 0.924 38 H 0.118 0.882 39 H 0.122 0.878 40 H 0.122 0.878 41 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.817 -22.954 3.886 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.720 3.280 4 H -0.198 1.198 5 H -0.210 1.210 6 H -0.210 1.210 7 C -0.560 4.560 8 H 0.074 0.926 9 C -0.014 4.014 10 C -0.158 4.158 11 C -0.004 4.004 12 N -0.373 5.373 13 C 0.321 3.679 14 O -0.410 6.410 15 C -0.178 4.178 16 H 0.150 0.850 17 C -0.141 4.141 18 H 0.146 0.854 19 C -0.098 4.098 20 C -0.055 4.055 21 C -0.128 4.128 22 C -0.131 4.131 23 C -0.148 4.148 24 C -0.115 4.115 25 C -0.085 4.085 26 C -0.116 4.116 27 H 0.142 0.858 28 H 0.070 0.930 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.072 0.928 32 H 0.072 0.928 33 H 0.081 0.919 34 H 0.080 0.920 35 H 0.231 0.769 36 H 0.129 0.871 37 H 0.094 0.906 38 H 0.136 0.864 39 H 0.140 0.860 40 H 0.140 0.860 41 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 4.780 -22.982 3.887 23.793 hybrid contribution 1.019 1.272 0.052 1.630 sum 5.799 -21.710 3.939 22.814 Atomic orbital electron populations 1.69977 1.06062 1.26564 1.50680 1.25033 0.94850 0.99304 0.95284 0.86532 0.80056 0.83773 0.77608 1.19752 1.20987 1.20991 1.21243 0.93022 0.90937 1.50776 0.92602 1.19033 0.93863 0.90898 0.97625 1.21880 0.99739 0.93398 1.00803 1.21603 0.91857 0.85115 1.01803 1.46159 1.10690 1.05797 1.74657 1.19606 0.88705 0.83316 0.76321 1.90643 1.16566 1.84265 1.49494 1.22420 1.01347 0.91740 1.02303 0.84988 1.22905 0.96268 0.94495 1.00389 0.85350 1.20438 0.95059 1.00954 0.93314 1.20335 0.93171 0.97153 0.94880 1.20596 0.97465 1.00976 0.93804 1.21014 0.97742 0.98833 0.95521 1.20960 0.92773 1.01176 0.99870 1.20631 0.98727 0.99211 0.92927 1.19567 0.93957 1.01141 0.93837 1.21424 0.99177 1.03474 0.87523 0.85815 0.92987 0.96299 0.96307 0.92802 0.92762 0.91884 0.91980 0.76937 0.87118 0.90585 0.86356 0.86009 0.86001 0.86450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -27.01 13.29 55.43 0.74 -26.27 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.58 29.54 -169.99 -5.02 16.56 16 4 H -0.27 -6.42 7.11 56.52 0.40 -6.02 16 5 H -0.28 -6.79 7.11 56.52 0.40 -6.39 16 6 H -0.28 -6.80 7.11 56.52 0.40 -6.40 16 7 C -0.52 -14.70 9.11 -34.44 -0.31 -15.01 16 8 H 0.06 1.52 7.74 -52.49 -0.41 1.11 16 9 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 10 C -0.12 -2.40 5.27 -26.73 -0.14 -2.54 16 11 C 0.12 2.16 5.67 -4.04 -0.02 2.14 16 12 N -0.72 -10.70 5.56 -60.30 -0.33 -11.03 16 13 C 0.53 8.01 6.92 -10.98 -0.08 7.93 16 14 O -0.53 -9.69 12.54 5.55 0.07 -9.62 16 15 C -0.16 -1.69 6.18 -91.77 -0.57 -2.26 16 16 H 0.13 1.03 8.14 -51.93 -0.42 0.61 16 17 C -0.12 -1.21 7.06 -90.16 -0.64 -1.84 16 18 H 0.13 0.90 8.14 -51.93 -0.42 0.48 16 19 C -0.06 -0.71 5.77 -27.52 -0.16 -0.87 16 20 C -0.06 -0.73 4.87 -104.45 -0.51 -1.24 16 21 C -0.11 -1.41 10.04 -39.46 -0.40 -1.81 16 22 C -0.11 -1.35 10.05 -39.66 -0.40 -1.75 16 23 C -0.13 -1.53 10.04 -39.66 -0.40 -1.93 16 24 C -0.10 -1.19 10.04 -39.46 -0.40 -1.59 16 25 C -0.09 -1.09 5.27 -104.46 -0.55 -1.64 16 26 C -0.10 -1.01 6.85 -91.46 -0.63 -1.63 16 27 H 0.12 0.98 8.14 -51.93 -0.42 0.56 16 28 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 33 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 34 H 0.06 1.23 8.14 -51.93 -0.42 0.80 16 35 H 0.40 4.77 8.47 -40.82 -0.35 4.42 16 36 H 0.11 1.53 6.21 -51.93 -0.32 1.21 16 37 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 41 H 0.12 1.22 8.06 -52.49 -0.42 0.79 16 LS Contribution 340.20 15.07 5.13 5.13 Total: -1.00 -33.21 340.20 -10.98 -44.18 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: -6.13 Total: 3.10 kcal Atomic # 6 Polarization: -16.61 SS G_CDS: -5.43 Total: -22.04 kcal Atomic # 7 Polarization: -37.71 SS G_CDS: 0.40 Total: -37.31 kcal Atomic # 8 Polarization: -9.69 SS G_CDS: 0.07 Total: -9.62 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 5.13 Total: 5.13 kcal Total: -33.21 -10.98 -44.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599341642.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.639 kcal (2) G-P(sol) polarization free energy of solvation -33.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.433 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.184 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.454 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds