Wall clock time and date at job start Tue Mar 31 2020 06:28:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86800 * 119.99788 * 2 1 4 4 H 1.48503 * 109.47017 * 239.99736 * 3 2 1 5 5 H 1.48504 * 109.47356 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47476 * 119.99512 * 3 2 1 7 7 C 1.37876 * 120.00388 * 179.97438 * 2 1 3 8 8 H 1.08002 * 120.00209 * 180.02562 * 7 2 1 9 9 C 1.50697 * 119.99922 * 0.02562 * 7 2 1 10 10 C 1.52997 * 109.47471 * 179.97438 * 9 7 2 11 11 C 1.53002 * 109.47535 * 179.97438 * 10 9 7 12 12 N 1.46494 * 109.47001 * 180.02562 * 11 10 9 13 13 C 1.34784 * 119.99635 * 180.02562 * 12 11 10 14 14 O 1.21279 * 119.99925 * 359.97438 * 13 12 11 15 15 C 1.50700 * 119.99961 * 180.02562 * 13 12 11 16 16 H 1.09007 * 115.53465 * 325.58716 * 15 13 12 17 17 C 1.52952 * 117.48215 * 111.17943 * 15 13 12 18 18 H 1.08998 * 118.97672 * 356.70276 * 17 15 13 19 19 C 1.50944 * 118.98421 * 201.35887 * 17 15 13 20 20 C 1.38793 * 129.73030 * 114.99427 * 19 17 15 21 21 C 1.38009 * 120.31804 * 179.97438 * 20 19 17 22 22 C 1.38245 * 119.88815 * 359.95333 * 21 20 19 23 23 C 1.38023 * 119.87644 * 0.03516 * 22 21 20 24 24 C 1.37811 * 110.47789 * 294.97090 * 19 17 15 25 25 C 1.53642 * 110.75794 * 0.65939 * 24 19 17 26 26 C 1.53036 * 117.48096 * 180.02562 * 15 13 12 27 27 H 1.09002 * 119.41491 * 4.09221 * 26 15 13 28 28 H 0.96998 * 120.00131 * 0.02562 * 1 2 3 29 29 H 1.09005 * 109.46912 * 60.00012 * 9 7 2 30 30 H 1.09004 * 109.47536 * 300.00220 * 9 7 2 31 31 H 1.09005 * 109.46889 * 60.00186 * 10 9 7 32 32 H 1.08996 * 109.47223 * 300.00965 * 10 9 7 33 33 H 1.09005 * 109.46767 * 60.00250 * 11 10 9 34 34 H 1.09002 * 109.47113 * 300.00590 * 11 10 9 35 35 H 0.96995 * 120.00292 * 0.27801 * 12 11 10 36 36 H 1.08002 * 119.83793 * 359.91049 * 20 19 17 37 37 H 1.08005 * 120.05938 * 180.02562 * 21 20 19 38 38 H 1.08006 * 120.06484 * 180.02562 * 22 21 20 39 39 H 1.08003 * 119.84238 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.44840 * 241.06033 * 25 24 19 41 41 H 1.08995 * 111.68613 * 118.90237 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1029 1.6964 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6966 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2512 -2.4991 0.0005 10 6 2.2454 -3.6620 0.0005 11 6 1.4805 -4.9871 0.0012 12 7 2.4325 -6.1005 0.0018 13 6 1.9833 -7.3713 0.0019 14 8 0.7909 -7.5929 0.0020 15 6 2.9626 -8.5167 0.0031 16 1 3.8852 -8.3467 -0.5521 17 6 3.0476 -9.3713 1.2688 18 1 2.4461 -9.0942 2.1344 19 6 4.2942 -10.1846 1.5198 20 6 5.2396 -10.0705 2.5295 21 6 6.3187 -10.9297 2.5739 22 6 6.4592 -11.9096 1.6089 23 6 5.5199 -12.0248 0.6041 24 6 4.4348 -11.1609 0.5573 25 6 3.2874 -11.0899 -0.4620 26 6 2.3896 -9.9357 0.0026 27 1 1.3110 -10.0775 -0.0664 28 1 -0.4850 0.8400 -0.0004 29 1 0.6248 -2.5571 -0.8897 30 1 0.6241 -2.5567 0.8903 31 1 2.8720 -3.6043 0.8906 32 1 2.8721 -3.6042 -0.8893 33 1 0.8535 -5.0451 -0.8887 34 1 0.8540 -5.0446 0.8914 35 1 3.3861 -5.9232 0.0058 36 1 5.1307 -9.3050 3.2836 37 1 7.0516 -10.8374 3.3618 38 1 7.3023 -12.5838 1.6411 39 1 5.6304 -12.7903 -0.1497 40 1 2.7283 -12.0254 -0.4448 41 1 3.6548 -10.8920 -1.4689 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000599341644.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:28:13 Heat of formation + Delta-G solvation = -2.688252 kcal Electronic energy + Delta-G solvation = -20682.080395 eV Core-core repulsion = 17526.575393 eV Total energy + Delta-G solvation = -3155.505002 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -41.15493 -39.28280 -37.09350 -35.36518 -33.31765 -32.00343 -31.28230 -30.71295 -28.13500 -26.96992 -24.72398 -23.06910 -22.23864 -21.14206 -20.71780 -20.60719 -19.63417 -17.45869 -16.52790 -16.41157 -15.77932 -15.45265 -15.35831 -15.11543 -14.49630 -14.24117 -14.00392 -13.73266 -13.62945 -13.10375 -12.88128 -12.78250 -12.29318 -12.01981 -11.83998 -11.73480 -11.59111 -11.14702 -10.90933 -10.84994 -10.74358 -10.63790 -10.31877 -9.93863 -9.87668 -9.39738 -9.14302 -9.07089 -8.85855 -8.74434 -8.37752 -6.02425 -4.05715 0.97620 1.07302 2.49606 3.14872 3.31607 3.34773 3.36403 3.38451 3.67084 4.13988 4.24497 4.43784 4.52774 4.57676 4.73567 4.77408 4.80131 4.98557 5.06463 5.18409 5.29137 5.33202 5.45073 5.46646 5.61980 5.69346 5.72550 5.75824 5.78481 5.96526 6.12656 6.14415 6.20524 6.35984 6.45989 6.58173 6.67162 6.81393 6.98708 7.62196 7.68215 7.74856 7.96031 8.33933 8.38332 9.00697 9.58454 11.08829 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.028238 B = 0.002468 C = 0.002325 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 991.322911 B =11344.397019 C =12038.640665 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.024 3.976 10 C -0.121 4.121 11 C 0.116 3.884 12 N -0.719 5.719 13 C 0.540 3.460 14 O -0.542 6.542 15 C -0.148 4.148 16 H 0.122 0.878 17 C -0.099 4.099 18 H 0.123 0.877 19 C -0.065 4.065 20 C -0.098 4.098 21 C -0.122 4.122 22 C -0.118 4.118 23 C -0.109 4.109 24 C -0.093 4.093 25 C -0.053 4.053 26 C -0.125 4.125 27 H 0.134 0.866 28 H 0.262 0.738 29 H 0.019 0.981 30 H 0.019 0.981 31 H 0.054 0.946 32 H 0.054 0.946 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.400 0.600 36 H 0.123 0.877 37 H 0.125 0.875 38 H 0.124 0.876 39 H 0.121 0.879 40 H 0.088 0.912 41 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.240 -25.325 1.978 28.198 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.721 3.279 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.014 4.014 10 C -0.159 4.159 11 C -0.006 4.006 12 N -0.369 5.369 13 C 0.325 3.675 14 O -0.419 6.419 15 C -0.169 4.169 16 H 0.140 0.860 17 C -0.117 4.117 18 H 0.141 0.859 19 C -0.065 4.065 20 C -0.116 4.116 21 C -0.140 4.140 22 C -0.136 4.136 23 C -0.127 4.127 24 C -0.093 4.093 25 C -0.090 4.090 26 C -0.144 4.144 27 H 0.152 0.848 28 H 0.071 0.929 29 H 0.037 0.963 30 H 0.037 0.963 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.234 0.766 36 H 0.141 0.859 37 H 0.143 0.857 38 H 0.142 0.858 39 H 0.139 0.861 40 H 0.107 0.893 41 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 11.197 -25.341 1.975 27.775 hybrid contribution 0.998 1.167 0.077 1.537 sum 12.195 -24.175 2.052 27.154 Atomic orbital electron populations 1.69953 1.06062 1.26824 1.50443 1.25030 0.94866 0.99308 0.95257 0.86637 0.79557 0.83068 0.78594 1.20240 1.21261 1.20237 1.21164 0.92956 0.90947 1.51097 0.92694 1.19027 0.93841 0.90837 0.97659 1.21891 0.99776 0.93289 1.00922 1.21678 0.91857 0.85049 1.02056 1.46127 1.10969 1.05642 1.74195 1.19414 0.88368 0.83334 0.76406 1.90701 1.16540 1.84767 1.49926 1.22245 1.01117 0.91343 1.02221 0.86000 1.21398 0.96394 1.01286 0.92651 0.85896 1.19630 0.94891 0.96240 0.95782 1.20752 0.93573 0.99333 0.97961 1.21049 0.97973 0.95746 0.99251 1.21054 0.98953 0.98652 0.94950 1.20661 0.93762 0.99206 0.99108 1.21081 0.96220 0.95897 0.96130 1.20841 0.92913 0.97741 0.97491 1.22935 1.00538 0.90705 1.00191 0.84784 0.92851 0.96270 0.96272 0.92701 0.92682 0.91651 0.91723 0.76630 0.85899 0.85730 0.85814 0.86093 0.89331 0.89342 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.85 13.29 55.43 0.74 -26.12 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.50 29.54 -169.99 -5.02 16.48 16 4 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 7 C -0.52 -14.63 9.11 -34.44 -0.31 -14.94 16 8 H 0.05 1.47 7.74 -52.49 -0.41 1.07 16 9 C 0.02 0.61 4.97 -27.89 -0.14 0.47 16 10 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 11 C 0.12 2.05 5.67 -4.04 -0.02 2.02 16 12 N -0.72 -10.37 5.56 -60.29 -0.33 -10.71 16 13 C 0.54 7.99 7.61 -10.98 -0.08 7.91 16 14 O -0.54 -10.07 16.33 5.56 0.09 -9.98 16 15 C -0.15 -1.66 5.76 -91.78 -0.53 -2.18 16 16 H 0.12 1.18 8.14 -51.92 -0.42 0.75 16 17 C -0.10 -1.05 6.58 -91.44 -0.60 -1.65 16 18 H 0.12 1.36 8.14 -51.93 -0.42 0.94 16 19 C -0.07 -0.65 5.94 -104.45 -0.62 -1.27 16 20 C -0.10 -0.89 10.04 -39.46 -0.40 -1.29 16 21 C -0.12 -0.96 10.04 -39.66 -0.40 -1.36 16 22 C -0.12 -0.88 10.05 -39.66 -0.40 -1.28 16 23 C -0.11 -0.87 10.04 -39.46 -0.40 -1.27 16 24 C -0.09 -0.85 6.20 -103.09 -0.64 -1.49 16 25 C -0.05 -0.43 6.76 -26.18 -0.18 -0.61 16 26 C -0.13 -1.29 6.49 -90.14 -0.59 -1.87 16 27 H 0.13 1.49 7.79 -51.93 -0.40 1.08 16 28 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 29 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 32 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.40 4.69 8.47 -40.82 -0.35 4.34 16 36 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.12 0.72 8.06 -52.48 -0.42 0.30 16 38 H 0.12 0.64 8.06 -52.48 -0.42 0.22 16 39 H 0.12 0.72 8.06 -52.48 -0.42 0.29 16 40 H 0.09 0.60 8.14 -51.93 -0.42 0.18 16 41 H 0.09 0.63 8.14 -51.93 -0.42 0.21 16 LS Contribution 348.00 15.07 5.24 5.24 Total: -1.00 -32.52 348.00 -11.03 -43.55 By element: Atomic # 1 Polarization: 7.53 SS G_CDS: -6.21 Total: 1.32 kcal Atomic # 6 Polarization: -14.25 SS G_CDS: -5.54 Total: -19.79 kcal Atomic # 7 Polarization: -37.23 SS G_CDS: 0.40 Total: -36.82 kcal Atomic # 8 Polarization: -10.07 SS G_CDS: 0.09 Total: -9.98 kcal Atomic # 14 Polarization: 21.50 SS G_CDS: -5.02 Total: 16.48 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.52 -11.03 -43.55 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000599341644.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.863 kcal (2) G-P(sol) polarization free energy of solvation -32.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.345 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.034 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.552 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds