Wall clock time and date at job start Tue Mar 31 2020 05:25:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13607 * 1 3 3 C 1.47199 * 179.97438 * 2 1 4 4 C 1.53000 * 109.47040 * 266.06924 * 3 2 1 5 5 N 1.46907 * 109.46920 * 179.83308 * 4 3 2 6 6 C 1.46900 * 110.99920 * 298.45247 * 5 4 3 7 7 C 1.50705 * 109.47386 * 293.12107 * 6 5 4 8 8 H 1.07993 * 119.99792 * 354.95509 * 7 6 5 9 9 C 1.37874 * 119.99912 * 174.95914 * 7 6 5 10 10 N 1.31520 * 120.00137 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99772 * 180.02562 * 9 7 6 12 12 H 1.48497 * 109.47310 * 59.99658 * 11 9 7 13 13 H 1.48502 * 109.46870 * 179.97438 * 11 9 7 14 14 H 1.48495 * 109.46774 * 299.99372 * 11 9 7 15 15 C 1.46893 * 110.99884 * 62.41055 * 5 4 3 16 16 C 1.50698 * 109.47319 * 66.04431 * 15 5 4 17 17 C 1.35869 * 126.75751 * 259.97164 * 16 15 5 18 18 N 1.33487 * 110.87607 * 180.02562 * 17 16 15 19 19 C 1.31618 * 110.88050 * 0.02562 * 18 17 16 20 20 N 1.37385 * 135.89844 * 180.02562 * 19 18 17 21 21 H 0.96997 * 120.31561 * 359.97044 * 20 19 18 22 22 C 1.34068 * 119.35829 * 179.97438 * 20 19 18 23 23 N 1.30942 * 123.17219 * 359.97438 * 22 20 19 24 24 C 1.32821 * 122.75071 * 359.97438 * 23 22 20 25 25 C 1.38884 * 119.03590 * 0.02562 * 24 23 22 26 26 H 1.09002 * 109.47226 * 146.07120 * 3 2 1 27 27 H 1.09002 * 109.47437 * 26.07373 * 3 2 1 28 28 H 1.08997 * 109.46865 * 59.83670 * 4 3 2 29 29 H 1.08996 * 109.47488 * 299.83562 * 4 3 2 30 30 H 1.09001 * 109.46888 * 53.11983 * 6 5 4 31 31 H 1.09005 * 109.47113 * 173.11965 * 6 5 4 32 32 H 0.96997 * 119.99769 * 180.02562 * 10 9 7 33 33 H 1.09004 * 109.47459 * 306.04296 * 15 5 4 34 34 H 1.09004 * 109.47061 * 186.04524 * 15 5 4 35 35 H 1.08007 * 124.56046 * 0.05792 * 17 16 15 36 36 H 1.08001 * 118.41367 * 179.97438 * 22 20 19 37 37 H 1.08004 * 120.48582 * 180.02562 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1361 0.0000 0.0000 3 6 2.6081 0.0007 0.0000 4 6 3.1180 0.0998 1.4391 5 7 4.5870 0.0964 1.4394 6 6 5.1107 -1.1531 0.8715 7 6 4.7671 -2.3024 1.7837 8 1 4.2872 -2.1137 2.7326 9 6 5.0654 -3.5946 1.4069 10 7 5.6494 -3.8244 0.2510 11 14 4.6388 -5.0193 2.5373 12 1 3.1727 -5.0433 2.7718 13 1 5.0596 -6.2956 1.9055 14 1 5.3447 -4.8514 3.8330 15 6 5.1162 1.2635 0.7214 16 6 4.7605 2.5199 1.4736 17 6 3.7425 3.3749 1.1930 18 7 3.7169 4.3862 2.0640 19 6 4.6853 4.2690 2.9476 20 7 5.1230 4.9886 4.0329 21 1 4.6692 5.8050 4.2944 22 6 6.1834 4.5515 4.7271 23 7 6.8368 3.4579 4.4242 24 6 6.5039 2.6829 3.3982 25 6 5.4190 3.0398 2.6080 26 1 2.9710 0.8535 -0.5736 27 1 2.9719 -0.9223 -0.4517 28 1 2.7526 -0.7515 2.0134 29 1 2.7567 1.0241 1.8898 30 1 4.6649 -1.3215 -0.1088 31 1 6.1936 -1.0805 0.7705 32 1 5.8589 -4.7336 -0.0142 33 1 4.6822 1.3031 -0.2778 34 1 6.2004 1.1813 0.6435 35 1 3.0472 3.2525 0.3756 36 1 6.5147 5.1292 5.5773 37 1 7.0685 1.7880 3.1816 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602582125.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:38 Heat of formation + Delta-G solvation = 131.753506 kcal Electronic energy + Delta-G solvation = -21669.327414 eV Core-core repulsion = 18448.404652 eV Total energy + Delta-G solvation = -3220.922762 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.73815 -38.88476 -37.48003 -35.83958 -35.00513 -32.68620 -31.05692 -30.04085 -29.58619 -26.81996 -25.03080 -24.76261 -23.57709 -22.65182 -20.64139 -19.71932 -18.17933 -17.45896 -17.26547 -16.54778 -16.14829 -15.65243 -15.30472 -15.04706 -14.56108 -14.05794 -13.89411 -13.68855 -13.32595 -12.92768 -12.69417 -12.50300 -12.00771 -11.94968 -11.74496 -11.66802 -11.37094 -11.13317 -11.05398 -10.74137 -10.55832 -10.31145 -10.14222 -9.88981 -9.39162 -9.25670 -8.46141 -8.45456 -7.66971 -7.26725 -6.05700 -4.06974 0.08998 1.51199 2.19410 3.17230 3.20197 3.33351 3.37831 3.39864 3.44383 3.57826 3.83463 4.18223 4.40424 4.45718 4.57397 4.91963 5.10207 5.14297 5.30377 5.44291 5.55429 5.64353 5.73786 5.80167 5.89097 5.95435 6.17204 6.39321 6.46834 6.57530 6.72888 6.76920 7.12871 7.21907 7.28533 7.60665 7.77705 7.93798 8.04239 8.07811 8.13536 8.48812 9.01159 9.58150 11.04331 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014451 B = 0.005122 C = 0.004137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1937.056915 B = 5465.170595 C = 6766.546581 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C 0.226 3.774 3 C -0.074 4.074 4 C 0.075 3.925 5 N -0.523 5.523 6 C 0.185 3.815 7 C -0.508 4.508 8 H 0.063 0.937 9 C 0.059 3.941 10 N -0.897 5.897 11 Si 0.893 3.107 12 H -0.278 1.278 13 H -0.288 1.288 14 H -0.276 1.276 15 C 0.114 3.886 16 C -0.145 4.145 17 C 0.048 3.952 18 N -0.520 5.520 19 C 0.236 3.764 20 N -0.528 5.528 21 H 0.422 0.578 22 C 0.347 3.653 23 N -0.539 5.539 24 C 0.230 3.770 25 C -0.186 4.186 26 H 0.099 0.901 27 H 0.122 0.878 28 H 0.088 0.912 29 H 0.064 0.936 30 H 0.005 0.995 31 H 0.030 0.970 32 H 0.262 0.738 33 H 0.040 0.960 34 H 0.075 0.925 35 H 0.156 0.844 36 H 0.211 0.789 37 H 0.177 0.823 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.517 17.372 5.997 18.711 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.142 5.142 2 C -0.092 4.092 3 C -0.116 4.116 4 C -0.055 4.055 5 N -0.245 5.245 6 C 0.061 3.939 7 C -0.547 4.547 8 H 0.081 0.919 9 C -0.143 4.143 10 N -0.537 5.537 11 Si 0.721 3.279 12 H -0.203 1.203 13 H -0.214 1.214 14 H -0.202 1.202 15 C -0.014 4.014 16 C -0.152 4.152 17 C -0.095 4.095 18 N -0.240 5.240 19 C -0.016 4.016 20 N -0.132 5.132 21 H 0.259 0.741 22 C 0.065 3.935 23 N -0.258 5.258 24 C 0.079 3.921 25 C -0.197 4.197 26 H 0.117 0.883 27 H 0.140 0.860 28 H 0.106 0.894 29 H 0.082 0.918 30 H 0.023 0.977 31 H 0.048 0.952 32 H 0.071 0.929 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.174 0.826 36 H 0.227 0.773 37 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 1.999 17.670 6.675 18.994 hybrid contribution -0.365 -1.026 -0.648 1.268 sum 1.635 16.643 6.026 17.776 Atomic orbital electron populations 1.81130 1.13237 1.10082 1.09735 1.29306 0.95308 0.92183 0.92365 1.20253 0.81467 1.05909 1.03963 1.21991 0.89218 1.02530 0.91761 1.62392 1.05013 1.03039 1.54069 1.19870 0.95479 0.84476 0.94092 1.21095 1.39235 0.90178 1.04159 0.91915 1.24935 0.95313 0.98838 0.95190 1.69928 1.42097 1.20945 1.20703 0.86634 0.78839 0.81480 0.80927 1.20330 1.21420 1.20194 1.20490 1.00032 0.87281 0.93643 1.20055 0.98812 0.98786 0.97550 1.22258 0.97961 0.91110 0.98120 1.69382 1.21172 1.27749 1.05691 1.20385 0.97224 0.92329 0.91662 1.41921 1.25466 1.23596 1.22197 0.74059 1.24837 0.82313 0.92542 0.93843 1.68017 1.30951 1.05948 1.20915 1.22904 0.89946 0.94517 0.84698 1.20781 1.00042 0.97711 1.01198 0.88275 0.86033 0.89398 0.91773 0.97746 0.95218 0.92853 0.94224 0.90613 0.82621 0.77303 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.46 -8.82 18.54 42.16 0.78 -8.04 16 2 C 0.23 3.84 15.43 -20.76 -0.32 3.52 16 3 C -0.07 -1.15 5.05 -29.52 -0.15 -1.30 16 4 C 0.08 1.32 4.94 -3.82 -0.02 1.30 16 5 N -0.52 -9.70 4.69 -237.51 -1.11 -10.82 16 6 C 0.19 4.18 4.52 -4.97 -0.02 4.16 16 7 C -0.51 -13.03 8.40 -34.44 -0.29 -13.32 16 8 H 0.06 1.63 7.36 -52.49 -0.39 1.24 16 9 C 0.06 1.57 5.46 -17.82 -0.10 1.47 16 10 N -0.90 -24.97 13.29 55.43 0.74 -24.23 16 11 Si 0.89 20.90 29.54 -169.99 -5.02 15.88 16 12 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.34 16 14 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 15 C 0.11 1.78 5.29 -4.98 -0.03 1.75 16 16 C -0.15 -2.20 4.80 -104.39 -0.50 -2.70 16 17 C 0.05 0.73 10.92 -17.68 -0.19 0.54 16 18 N -0.52 -8.04 11.16 -11.01 -0.12 -8.16 16 19 C 0.24 3.14 8.71 -153.97 -1.34 1.79 16 20 N -0.53 -4.14 5.35 -12.04 -0.06 -4.21 16 21 H 0.42 1.79 8.93 -40.82 -0.36 1.43 16 22 C 0.35 2.28 12.25 -90.89 -1.11 1.16 16 23 N -0.54 -5.60 10.30 -14.07 -0.14 -5.74 16 24 C 0.23 2.91 11.36 -16.88 -0.19 2.72 16 25 C -0.19 -2.67 6.43 -104.97 -0.68 -3.35 16 26 H 0.10 1.30 6.34 -51.93 -0.33 0.97 16 27 H 0.12 2.08 6.28 -51.93 -0.33 1.76 16 28 H 0.09 1.72 6.98 -51.93 -0.36 1.36 16 29 H 0.06 1.09 6.66 -51.93 -0.35 0.74 16 30 H 0.00 0.11 6.01 -51.93 -0.31 -0.20 16 31 H 0.03 0.72 7.91 -51.93 -0.41 0.31 16 32 H 0.26 7.02 8.31 -40.82 -0.34 6.68 16 33 H 0.04 0.57 6.08 -51.93 -0.32 0.26 16 34 H 0.08 1.17 7.92 -51.93 -0.41 0.76 16 35 H 0.16 2.10 8.06 -52.48 -0.42 1.68 16 36 H 0.21 0.18 8.06 -52.49 -0.42 -0.24 16 37 H 0.18 2.13 8.06 -52.48 -0.42 1.71 16 LS Contribution 320.68 15.07 4.83 4.83 Total: -1.00 -33.73 320.68 -9.02 -42.75 By element: Atomic # 1 Polarization: 3.96 SS G_CDS: -3.97 Total: -0.01 kcal Atomic # 6 Polarization: 2.68 SS G_CDS: -4.94 Total: -2.26 kcal Atomic # 7 Polarization: -61.27 SS G_CDS: 0.07 Total: -61.20 kcal Atomic # 14 Polarization: 20.90 SS G_CDS: -5.02 Total: 15.88 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -33.73 -9.02 -42.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602582125.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.504 kcal (2) G-P(sol) polarization free energy of solvation -33.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 140.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.023 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.751 kcal (6) G-S(sol) free energy of system = (1) + (5) 131.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds