Wall clock time and date at job start Tue Mar 31 2020 05:59:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46877 * 2 1 4 4 C 1.52998 * 109.46629 * 120.00108 * 2 1 3 5 5 C 1.50699 * 109.47529 * 294.99627 * 4 2 1 6 6 H 1.08001 * 119.99844 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47374 * 60.00150 * 9 7 5 11 11 H 1.48506 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47341 * 299.99704 * 9 7 5 13 13 C 1.52998 * 109.46957 * 240.00356 * 2 1 3 14 14 N 1.46896 * 109.47489 * 64.99925 * 13 2 1 15 15 C 1.46898 * 111.00277 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.47071 * 180.02562 * 15 14 13 17 17 N 1.31809 * 119.12396 * 269.97533 * 16 15 14 18 18 C 1.32313 * 120.81954 * 179.72922 * 17 16 15 19 19 C 1.38624 * 119.10338 * 0.57390 * 18 17 16 20 20 C 1.38574 * 118.39673 * 359.43958 * 19 18 17 21 21 C 1.50703 * 120.44930 * 180.30273 * 20 19 18 22 22 F 1.39898 * 109.46737 * 300.00099 * 21 20 19 23 23 F 1.39899 * 109.47084 * 59.99969 * 21 20 19 24 24 N 1.31789 * 119.12383 * 90.00396 * 16 15 14 25 25 H 1.09004 * 109.47219 * 59.99633 * 1 2 3 26 26 H 1.08998 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47349 * 299.99857 * 1 2 3 28 28 H 1.09000 * 109.47268 * 55.00477 * 4 2 1 29 29 H 1.09009 * 109.46678 * 174.99919 * 4 2 1 30 30 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47059 * 304.99809 * 13 2 1 32 32 H 1.09004 * 109.46986 * 185.00267 * 13 2 1 33 33 H 1.00905 * 110.99818 * 56.04182 * 14 13 2 34 34 H 1.08996 * 109.47028 * 59.99712 * 15 14 13 35 35 H 1.09003 * 109.46528 * 300.00274 * 15 14 13 36 36 H 1.07999 * 120.44989 * 180.31173 * 18 17 16 37 37 H 1.08002 * 120.80485 * 179.72100 * 19 18 17 38 38 H 1.08994 * 109.47607 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9741 2.3758 7 6 1.9931 -0.4018 3.7282 8 7 2.6771 -1.5185 3.8510 9 14 1.4984 0.5625 5.2496 10 1 0.0184 0.6681 5.3093 11 1 1.9934 -0.1376 6.4622 12 1 2.0896 1.9233 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1257 -0.6264 -3.6672 16 6 1.7097 0.1794 -4.8707 17 7 0.5490 -0.0732 -5.4419 18 6 0.1481 0.6174 -6.4969 19 6 0.9722 1.6086 -7.0069 20 6 2.1849 1.8449 -6.3794 21 6 3.1135 2.9160 -6.8908 22 9 3.4734 2.6292 -8.2119 23 9 2.4671 4.1557 -6.8421 24 7 2.5164 1.1176 -5.3245 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -1.7199 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 2.9243 -1.8414 4.7317 31 1 1.6054 -1.7197 -1.2952 32 1 3.1263 -0.7994 -1.2056 33 1 1.9881 0.9874 -2.3966 34 1 1.6921 -1.6244 -3.7301 35 1 3.2127 -0.7036 -3.6400 36 1 -0.8064 0.4087 -6.9572 37 1 0.6743 2.1859 -7.8697 38 1 4.0085 2.9479 -6.2696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602662611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:02 Heat of formation + Delta-G solvation = -65.516725 kcal Electronic energy + Delta-G solvation = -21413.492161 eV Core-core repulsion = 17733.325933 eV Total energy + Delta-G solvation = -3680.166228 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -49.55244 -47.53784 -41.50339 -37.04005 -34.67617 -34.41779 -32.73108 -31.58709 -28.02277 -27.60819 -26.56320 -24.74125 -23.82220 -22.53283 -22.01696 -19.21753 -18.75784 -17.97921 -17.79811 -17.13346 -16.35661 -15.97164 -15.63792 -15.45493 -15.02394 -14.58177 -14.41400 -14.20700 -13.89975 -13.88031 -13.45800 -13.32823 -12.65228 -12.33757 -12.12601 -11.91989 -11.54754 -11.35320 -11.32928 -11.28204 -10.83676 -10.76454 -10.29989 -10.27452 -10.08271 -9.73943 -9.70177 -9.14942 -8.96946 -8.31722 -8.25501 -5.96749 -3.97860 0.29010 0.51239 2.65442 3.15643 3.35380 3.39656 3.42300 3.55611 3.61971 3.75613 4.13294 4.43325 4.47524 4.50419 4.56324 4.61272 4.88665 4.99491 5.37668 5.39100 5.49446 5.69805 5.84621 5.87202 6.14006 6.38814 6.45196 6.52490 6.67842 6.96842 7.14883 7.18206 7.26991 7.49619 7.63614 7.69789 7.85607 8.03330 8.47236 9.08202 9.65473 11.14765 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.002666 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.803491 B =10501.504976 C =10851.475821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.082 4.082 3 H 0.054 0.946 4 C 0.028 3.972 5 C -0.513 4.513 6 H 0.056 0.944 7 C 0.056 3.944 8 N -0.897 5.897 9 Si 0.890 3.110 10 H -0.277 1.277 11 H -0.288 1.288 12 H -0.278 1.278 13 C 0.066 3.934 14 N -0.678 5.678 15 C 0.124 3.876 16 C 0.337 3.663 17 N -0.482 5.482 18 C 0.156 3.844 19 C -0.196 4.196 20 C 0.099 3.901 21 C 0.326 3.674 22 F -0.190 7.190 23 F -0.188 7.188 24 N -0.492 5.492 25 H 0.040 0.960 26 H 0.041 0.959 27 H 0.053 0.947 28 H 0.017 0.983 29 H 0.013 0.987 30 H 0.260 0.740 31 H 0.071 0.929 32 H 0.030 0.970 33 H 0.340 0.660 34 H 0.101 0.899 35 H 0.059 0.941 36 H 0.178 0.822 37 H 0.153 0.847 38 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.014 5.887 -24.765 25.475 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C -0.101 4.101 3 H 0.072 0.928 4 C -0.009 4.009 5 C -0.552 4.552 6 H 0.074 0.926 7 C -0.145 4.145 8 N -0.537 5.537 9 Si 0.718 3.282 10 H -0.203 1.203 11 H -0.214 1.214 12 H -0.203 1.203 13 C -0.063 4.063 14 N -0.310 5.310 15 C -0.007 4.007 16 C 0.070 3.930 17 N -0.196 5.196 18 C -0.011 4.011 19 C -0.219 4.219 20 C -0.049 4.049 21 C 0.271 3.729 22 F -0.171 7.171 23 F -0.169 7.169 24 N -0.206 5.206 25 H 0.059 0.941 26 H 0.060 0.940 27 H 0.072 0.928 28 H 0.035 0.965 29 H 0.031 0.969 30 H 0.070 0.930 31 H 0.090 0.910 32 H 0.048 0.952 33 H 0.158 0.842 34 H 0.119 0.881 35 H 0.077 0.923 36 H 0.195 0.805 37 H 0.171 0.829 38 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -1.281 4.955 -23.889 24.431 hybrid contribution 0.367 1.284 0.014 1.336 sum -0.914 6.239 -23.875 24.694 Atomic orbital electron populations 1.21591 0.95640 1.00675 1.00111 1.21211 0.96082 0.98957 0.93872 0.92796 1.19115 0.95944 0.95593 0.90293 1.21197 1.34664 1.08320 0.91002 0.92628 1.25014 0.95325 0.95099 0.99078 1.69957 1.39015 1.21238 1.23487 0.86689 0.78913 0.80095 0.82483 1.20270 1.21373 1.20318 1.22206 0.97556 0.97799 0.88691 1.60549 1.63810 1.06006 1.00650 1.20690 0.98563 0.96607 0.84817 1.23275 0.85290 0.89715 0.94766 1.68349 1.15634 1.27043 1.08540 1.23418 0.98912 0.88804 0.89981 1.22731 0.95668 1.00720 1.02749 1.21916 0.94233 0.95890 0.92889 1.20108 0.94161 0.77747 0.80882 1.93043 1.92324 1.93471 1.38295 1.93055 1.83934 1.43522 1.96424 1.67876 1.35339 1.06112 1.11295 0.94060 0.94026 0.92757 0.96459 0.96853 0.93037 0.91032 0.95209 0.84195 0.88054 0.92291 0.80506 0.82891 0.84535 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.40 8.89 37.16 0.33 -2.07 16 2 C -0.08 -1.67 2.48 -90.62 -0.22 -1.89 16 3 H 0.05 1.11 8.14 -51.93 -0.42 0.68 16 4 C 0.03 0.71 4.45 -27.88 -0.12 0.59 16 5 C -0.51 -14.38 8.41 -34.44 -0.29 -14.67 16 6 H 0.06 1.52 7.06 -52.49 -0.37 1.15 16 7 C 0.06 1.59 5.46 -17.82 -0.10 1.50 16 8 N -0.90 -26.97 13.29 55.43 0.74 -26.23 16 9 Si 0.89 21.75 29.54 -169.99 -5.02 16.73 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 12 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 13 C 0.07 1.10 5.07 -3.83 -0.02 1.08 16 14 N -0.68 -9.87 5.94 -115.06 -0.68 -10.56 16 15 C 0.12 1.54 6.12 -4.98 -0.03 1.51 16 16 C 0.34 4.17 7.15 -157.19 -1.12 3.04 16 17 N -0.48 -5.74 10.33 -10.72 -0.11 -5.85 16 18 C 0.16 1.35 11.31 -17.20 -0.19 1.15 16 19 C -0.20 -1.60 9.77 -39.32 -0.38 -1.99 16 20 C 0.10 0.97 6.31 -82.25 -0.52 0.45 16 21 C 0.33 2.59 5.58 36.01 0.20 2.79 16 22 F -0.19 -1.62 17.27 2.25 0.04 -1.58 16 23 F -0.19 -1.69 17.27 2.25 0.04 -1.66 16 24 N -0.49 -5.72 10.26 -6.99 -0.07 -5.79 16 25 H 0.04 0.73 7.75 -51.93 -0.40 0.33 16 26 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 27 H 0.05 1.13 6.95 -51.93 -0.36 0.77 16 28 H 0.02 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.01 0.36 8.14 -51.92 -0.42 -0.07 16 30 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 31 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 32 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.34 4.92 8.72 -39.29 -0.34 4.57 16 34 H 0.10 1.22 8.14 -51.93 -0.42 0.80 16 35 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.18 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.15 0.84 8.06 -52.49 -0.42 0.42 16 38 H 0.14 0.82 8.12 -51.93 -0.42 0.40 16 LS Contribution 334.37 15.07 5.04 5.04 Total: -1.00 -31.61 334.37 -7.77 -39.38 By element: Atomic # 1 Polarization: 4.29 SS G_CDS: -5.26 Total: -0.97 kcal Atomic # 6 Polarization: -6.03 SS G_CDS: -2.48 Total: -8.50 kcal Atomic # 7 Polarization: -48.31 SS G_CDS: -0.13 Total: -48.44 kcal Atomic # 9 Polarization: -3.31 SS G_CDS: 0.08 Total: -3.24 kcal Atomic # 14 Polarization: 21.75 SS G_CDS: -5.02 Total: 16.73 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -31.61 -7.77 -39.38 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.137 kcal (2) G-P(sol) polarization free energy of solvation -31.608 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.745 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.771 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.380 kcal (6) G-S(sol) free energy of system = (1) + (5) -65.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds