Wall clock time and date at job start Tue Mar 31 2020 05:59:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09002 * 109.46877 * 2 1 4 4 C 1.52998 * 109.46629 * 120.00108 * 2 1 3 5 5 C 1.50699 * 109.47529 * 294.99627 * 4 2 1 6 6 H 1.08001 * 119.99844 * 0.02562 * 5 4 2 7 7 C 1.37871 * 120.00114 * 180.02562 * 5 4 2 8 8 N 1.31518 * 120.00064 * 0.02562 * 7 5 4 9 9 Si 1.86800 * 119.99906 * 180.02562 * 7 5 4 10 10 H 1.48498 * 109.47374 * 60.00150 * 9 7 5 11 11 H 1.48506 * 109.47033 * 179.97438 * 9 7 5 12 12 H 1.48500 * 109.47341 * 299.99704 * 9 7 5 13 13 C 1.52998 * 109.46957 * 240.00356 * 2 1 3 14 14 N 1.46896 * 109.47489 * 64.99925 * 13 2 1 15 15 C 1.46898 * 111.00277 * 179.97438 * 14 13 2 16 16 C 1.50696 * 109.47071 * 180.02562 * 15 14 13 17 17 N 1.31809 * 119.12396 * 269.97533 * 16 15 14 18 18 C 1.32313 * 120.81954 * 179.72922 * 17 16 15 19 19 C 1.38624 * 119.10338 * 0.57390 * 18 17 16 20 20 C 1.38574 * 118.39673 * 359.43958 * 19 18 17 21 21 C 1.50703 * 120.44930 * 180.30273 * 20 19 18 22 22 F 1.39898 * 109.46737 * 300.00099 * 21 20 19 23 23 F 1.39899 * 109.47084 * 59.99969 * 21 20 19 24 24 N 1.31789 * 119.12383 * 90.00396 * 16 15 14 25 25 H 1.09004 * 109.47219 * 59.99633 * 1 2 3 26 26 H 1.08998 * 109.47110 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.47349 * 299.99857 * 1 2 3 28 28 H 1.09000 * 109.47268 * 55.00477 * 4 2 1 29 29 H 1.09009 * 109.46678 * 174.99919 * 4 2 1 30 30 H 0.97005 * 119.99620 * 180.02562 * 8 7 5 31 31 H 1.08997 * 109.47059 * 304.99809 * 13 2 1 32 32 H 1.09004 * 109.46986 * 185.00267 * 13 2 1 33 33 H 1.00905 * 110.99818 * 56.04182 * 14 13 2 34 34 H 1.08996 * 109.47028 * 59.99712 * 15 14 13 35 35 H 1.09003 * 109.46528 * 300.00274 * 15 14 13 36 36 H 1.07999 * 120.44989 * 180.31173 * 18 17 16 37 37 H 1.08002 * 120.80485 * 179.72100 * 19 18 17 38 38 H 1.08994 * 109.47607 * 180.02562 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7213 1.2492 5 6 1.6413 0.0570 2.4766 6 1 1.0800 0.9741 2.3758 7 6 1.9931 -0.4018 3.7282 8 7 2.6771 -1.5185 3.8510 9 14 1.4984 0.5625 5.2496 10 1 0.0184 0.6681 5.3093 11 1 1.9934 -0.1376 6.4622 12 1 2.0896 1.9233 5.1872 13 6 2.0400 -0.7212 -1.2493 14 7 1.6514 0.0375 -2.4456 15 6 2.1257 -0.6264 -3.6672 16 6 1.7097 0.1794 -4.8707 17 7 0.5490 -0.0732 -5.4419 18 6 0.1481 0.6174 -6.4969 19 6 0.9722 1.6086 -7.0069 20 6 2.1849 1.8449 -6.3794 21 6 3.1135 2.9160 -6.8908 22 9 3.4734 2.6292 -8.2119 23 9 2.4671 4.1557 -6.8421 24 7 2.5164 1.1176 -5.3245 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3634 0.5138 0.8900 28 1 1.6053 -1.7199 1.2951 29 1 3.1263 -0.7995 1.2056 30 1 2.9243 -1.8414 4.7317 31 1 1.6054 -1.7197 -1.2952 32 1 3.1263 -0.7994 -1.2056 33 1 1.9881 0.9874 -2.3966 34 1 1.6921 -1.6244 -3.7301 35 1 3.2127 -0.7036 -3.6400 36 1 -0.8064 0.4087 -6.9572 37 1 0.6743 2.1859 -7.8697 38 1 4.0085 2.9479 -6.2696 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602662611.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:59:01 Heat of formation + Delta-G solvation = -85.836457 kcal Electronic energy + Delta-G solvation = -21414.373291 eV Core-core repulsion = 17733.325933 eV Total energy + Delta-G solvation = -3681.047357 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -50.19878 -48.18706 -42.25873 -38.43200 -36.01229 -35.30258 -34.31734 -32.96231 -29.20026 -28.66397 -28.10000 -26.21152 -24.69976 -24.01710 -23.04329 -20.84521 -19.47926 -18.73209 -18.46482 -18.43631 -17.80668 -16.77581 -16.62069 -16.56269 -16.35161 -16.04786 -15.41258 -15.21913 -14.98920 -14.59981 -14.54922 -14.37382 -14.09419 -13.90191 -13.43434 -13.21204 -13.05901 -12.74046 -12.60491 -12.55803 -12.20441 -12.13145 -12.08148 -11.94589 -11.48850 -11.10696 -10.99793 -10.73565 -10.51282 -10.50417 -9.44166 -8.16123 -6.24933 -0.44958 -0.19943 1.41071 1.43588 1.51224 1.96582 2.36352 2.43788 2.77033 3.01936 3.12895 3.17384 3.36094 3.51763 3.83581 3.87369 3.99783 4.09778 4.21811 4.26054 4.34005 4.51963 4.53673 4.67634 4.89456 4.92984 5.02178 5.14526 5.29600 5.46203 5.51701 5.56054 5.73064 5.81742 5.90432 5.92278 6.30253 6.32912 6.85385 6.90837 7.43140 8.95696 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028140 B = 0.002666 C = 0.002580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.803491 B =10501.504976 C =10851.475821 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.074 4.074 3 H 0.052 0.948 4 C 0.033 3.967 5 C -0.530 4.530 6 H 0.060 0.940 7 C -0.001 4.001 8 N -0.935 5.935 9 Si 0.959 3.041 10 H -0.268 1.268 11 H -0.285 1.285 12 H -0.268 1.268 13 C 0.080 3.920 14 N -0.677 5.677 15 C 0.128 3.872 16 C 0.320 3.680 17 N -0.507 5.507 18 C 0.154 3.846 19 C -0.187 4.187 20 C 0.082 3.918 21 C 0.331 3.669 22 F -0.193 7.193 23 F -0.194 7.194 24 N -0.506 5.506 25 H 0.061 0.939 26 H 0.037 0.963 27 H 0.037 0.963 28 H -0.007 1.007 29 H -0.011 1.011 30 H 0.262 0.738 31 H 0.071 0.929 32 H 0.028 0.972 33 H 0.342 0.658 34 H 0.103 0.897 35 H 0.065 0.935 36 H 0.214 0.786 37 H 0.182 0.818 38 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.926 7.184 -26.055 27.096 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 H 0.071 0.929 4 C -0.004 4.004 5 C -0.568 4.568 6 H 0.078 0.922 7 C -0.199 4.199 8 N -0.576 5.576 9 Si 0.784 3.216 10 H -0.193 1.193 11 H -0.210 1.210 12 H -0.193 1.193 13 C -0.049 4.049 14 N -0.309 5.309 15 C -0.003 4.003 16 C 0.052 3.948 17 N -0.221 5.221 18 C -0.012 4.012 19 C -0.208 4.208 20 C -0.066 4.066 21 C 0.276 3.724 22 F -0.174 7.174 23 F -0.175 7.175 24 N -0.221 5.221 25 H 0.080 0.920 26 H 0.056 0.944 27 H 0.056 0.944 28 H 0.011 0.989 29 H 0.007 0.993 30 H 0.071 0.929 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.159 0.841 34 H 0.121 0.879 35 H 0.083 0.917 36 H 0.231 0.769 37 H 0.200 0.800 38 H 0.172 0.828 Dipole moment (debyes) X Y Z Total from point charges -2.197 6.270 -25.208 26.068 hybrid contribution 0.632 0.890 0.299 1.132 sum -1.565 7.160 -24.909 25.965 Atomic orbital electron populations 1.21476 0.94821 1.00474 1.00203 1.21014 0.96607 0.98443 0.93240 0.92931 1.18999 0.94265 0.94735 0.92425 1.21618 1.34446 1.08614 0.92169 0.92228 1.25925 0.95280 0.96096 1.02564 1.70091 1.40230 1.22910 1.24323 0.85588 0.78900 0.78806 0.78290 1.19328 1.21006 1.19289 1.21888 0.97266 0.97435 0.88315 1.60438 1.63983 1.05922 1.00560 1.20632 0.98909 0.96605 0.84127 1.23074 0.86039 0.90499 0.95199 1.68333 1.15636 1.28175 1.09930 1.24066 1.00111 0.88076 0.88946 1.23109 0.94677 1.00158 1.02896 1.22287 0.95342 0.96165 0.92762 1.20183 0.94391 0.76942 0.80844 1.93038 1.92297 1.93465 1.38593 1.93043 1.84151 1.43856 1.96448 1.67818 1.35600 1.06418 1.12230 0.92008 0.94362 0.94433 0.98907 0.99274 0.92935 0.91103 0.95334 0.84058 0.87918 0.91712 0.76948 0.80036 0.82761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -4.34 8.89 71.98 0.64 -3.70 16 2 C -0.07 -3.01 2.48 -10.79 -0.03 -3.04 16 3 H 0.05 2.14 8.14 -2.39 -0.02 2.12 16 4 C 0.03 1.74 4.45 29.85 0.13 1.88 16 5 C -0.53 -30.06 8.41 25.60 0.22 -29.84 16 6 H 0.06 3.26 7.06 -2.91 -0.02 3.24 16 7 C 0.00 -0.08 5.46 84.65 0.46 0.38 16 8 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 9 Si 0.96 44.63 29.54 68.60 2.03 46.65 16 10 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 11 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 12 H -0.27 -11.97 7.11 99.48 0.71 -11.27 16 13 C 0.08 2.66 5.07 86.30 0.44 3.10 16 14 N -0.68 -19.17 5.94 -517.95 -3.08 -22.25 16 15 C 0.13 3.09 6.12 85.56 0.52 3.62 16 16 C 0.32 7.58 7.15 138.75 0.99 8.57 16 17 N -0.51 -11.28 10.33 -187.84 -1.94 -13.22 16 18 C 0.15 2.28 11.31 84.71 0.96 3.23 16 19 C -0.19 -2.55 9.77 22.44 0.22 -2.34 16 20 C 0.08 1.45 6.31 42.56 0.27 1.72 16 21 C 0.33 4.66 5.58 71.24 0.40 5.06 16 22 F -0.19 -2.93 17.27 44.97 0.78 -2.15 16 23 F -0.19 -3.14 17.27 44.97 0.78 -2.36 16 24 N -0.51 -11.19 10.26 -176.03 -1.81 -12.99 16 25 H 0.06 2.12 7.75 -2.39 -0.02 2.10 16 26 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.04 1.54 6.95 -2.38 -0.02 1.53 16 28 H -0.01 -0.42 8.14 -2.39 -0.02 -0.44 16 29 H -0.01 -0.63 8.14 -2.38 -0.02 -0.65 16 30 H 0.26 15.13 8.31 -92.70 -0.77 14.36 16 31 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 32 H 0.03 0.95 8.14 -2.38 -0.02 0.93 16 33 H 0.34 9.57 8.72 -89.69 -0.78 8.79 16 34 H 0.10 2.42 8.14 -2.39 -0.02 2.40 16 35 H 0.06 1.48 8.14 -2.39 -0.02 1.46 16 36 H 0.21 1.35 8.06 -2.91 -0.02 1.33 16 37 H 0.18 1.35 8.06 -2.91 -0.02 1.33 16 38 H 0.16 1.61 8.12 -2.39 -0.02 1.59 16 Total: -1.00 -68.09 334.37 2.55 -65.54 By element: Atomic # 1 Polarization: 8.74 SS G_CDS: 0.29 Total: 9.03 kcal Atomic # 6 Polarization: -16.58 SS G_CDS: 5.22 Total: -11.36 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -6.54 Total: -105.36 kcal Atomic # 9 Polarization: -6.07 SS G_CDS: 1.55 Total: -4.51 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.65 kcal Total: -68.09 2.55 -65.54 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602662611.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.293 kcal (2) G-P(sol) polarization free energy of solvation -68.092 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.385 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.543 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds