Wall clock time and date at job start Tue Mar 31 2020 06:08:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99987 * 2 1 4 4 C 1.50698 * 109.46749 * 288.13999 * 3 2 1 5 5 N 1.30503 * 125.64635 * 94.18880 * 4 3 2 6 6 C 1.34125 * 109.25677 * 180.14322 * 5 4 3 7 7 C 1.34676 * 108.01979 * 359.61816 * 6 5 4 8 8 N 1.35041 * 125.65317 * 273.90683 * 4 3 2 9 9 C 1.46497 * 126.39717 * 0.02562 * 8 4 3 10 10 F 1.39901 * 109.46971 * 203.01918 * 9 8 4 11 11 F 1.39899 * 109.47200 * 323.02026 * 9 8 4 12 12 C 1.46904 * 110.99568 * 123.95291 * 2 1 3 13 13 C 1.52995 * 109.47095 * 72.11851 * 12 2 1 14 14 C 1.50706 * 115.55537 * 55.77493 * 13 12 2 15 15 H 1.07997 * 119.99561 * 264.79894 * 14 13 12 16 16 C 1.37874 * 120.00027 * 84.79107 * 14 13 12 17 17 N 1.31511 * 120.00286 * 2.03021 * 16 14 13 18 18 Si 1.86801 * 119.99684 * 182.02349 * 16 14 13 19 19 H 1.48494 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46918 * 120.00805 * 18 16 14 21 21 H 1.48503 * 109.47080 * 240.00303 * 18 16 14 22 22 C 1.53000 * 117.49712 * 270.09914 * 13 12 2 23 23 C 1.53007 * 117.49694 * 201.44216 * 13 12 2 24 24 H 1.08998 * 109.46909 * 57.54903 * 1 2 3 25 25 H 1.09000 * 109.47217 * 177.54144 * 1 2 3 26 26 H 1.09001 * 109.47341 * 297.54380 * 1 2 3 27 27 H 1.09002 * 109.46689 * 168.14778 * 3 2 1 28 28 H 1.08994 * 109.47351 * 48.14407 * 3 2 1 29 29 H 1.08003 * 125.99188 * 179.88014 * 6 5 4 30 30 H 1.07995 * 126.58782 * 180.25377 * 7 6 5 31 31 H 1.08998 * 109.47323 * 83.01923 * 9 8 4 32 32 H 1.09000 * 109.46575 * 192.11308 * 12 2 1 33 33 H 1.08994 * 109.47458 * 312.11192 * 12 2 1 34 34 H 0.96998 * 120.00367 * 185.01340 * 17 16 14 35 35 H 1.09000 * 117.49991 * 0.02562 * 22 13 12 36 36 H 1.09000 * 117.49675 * 145.02236 * 22 13 12 37 37 H 1.08996 * 117.49717 * 214.97587 * 23 13 12 38 38 H 1.09001 * 117.49462 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7625 1.9988 -1.3502 5 7 0.7402 2.7410 -1.6778 6 6 0.8625 3.1223 -2.9579 7 6 2.0082 2.6034 -3.4395 8 7 2.5795 1.8907 -2.4200 9 6 3.8413 1.1487 -2.4786 10 9 4.6396 1.6668 -3.5040 11 9 4.5123 1.2727 -1.2573 12 6 1.9954 -0.7660 1.1377 13 6 1.7646 -2.2593 0.8975 14 6 2.3340 -2.8070 -0.3858 15 1 1.7092 -2.8863 -1.2632 16 6 3.6524 -3.2065 -0.4399 17 7 4.4023 -3.1472 0.6388 18 14 4.3736 -3.8324 -2.0454 19 1 3.3310 -3.8000 -3.1023 20 1 5.5120 -2.9677 -2.4470 21 1 4.8512 -5.2267 -1.8633 22 6 0.4512 -2.8610 1.4012 23 6 1.7647 -3.1796 2.1198 24 1 -0.3633 0.5514 -0.8672 25 1 -0.3633 -1.0267 -0.0441 26 1 -0.3634 0.4752 0.9112 27 1 3.0646 1.3501 0.2111 28 1 1.4855 1.9564 0.7654 29 1 0.1666 3.7408 -3.5052 30 1 2.4009 2.7264 -4.4380 31 1 3.6353 0.0965 -2.6748 32 1 3.0636 -0.5754 1.2408 33 1 1.4822 -0.4610 2.0496 34 1 5.3474 -3.3587 0.5848 35 1 -0.2487 -2.1930 1.9033 36 1 -0.0009 -3.6533 0.8045 37 1 2.1761 -4.1813 1.9955 38 1 1.9295 -2.7212 3.0949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000602763230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:11 Heat of formation + Delta-G solvation = 9.961320 kcal Electronic energy + Delta-G solvation = -23746.330255 eV Core-core repulsion = 20069.437001 eV Total energy + Delta-G solvation = -3676.893254 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -49.27495 -47.38279 -41.93548 -37.64125 -35.17331 -33.34668 -31.87427 -30.25695 -27.00714 -26.76770 -25.71197 -25.19551 -21.94761 -21.39806 -21.04590 -20.21725 -19.01530 -18.03527 -17.93774 -17.13173 -16.05112 -15.33215 -14.97423 -14.68148 -14.58049 -14.15972 -14.12932 -14.05066 -13.90805 -13.66328 -13.26969 -13.21433 -12.67721 -12.30502 -12.12397 -11.69300 -11.26943 -11.13297 -11.02896 -10.98179 -10.66851 -10.45459 -10.12747 -10.01032 -9.86126 -9.43571 -8.91119 -8.41806 -8.35318 -8.03213 -7.58803 -5.98647 -4.00892 1.92929 2.21579 3.16021 3.22558 3.34418 3.36871 3.70105 4.21625 4.38319 4.42836 4.61995 4.73183 4.85232 5.29470 5.33054 5.42632 5.49738 5.78070 5.81313 6.01925 6.05738 6.20821 6.26326 6.29386 6.47717 6.57666 6.60280 6.71645 6.75617 6.90429 6.98607 7.14214 7.45901 7.52708 7.70870 7.90176 7.93210 8.12178 8.52949 8.98343 9.61159 11.10660 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.007624 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.385687 B = 3671.752734 C = 4867.070817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.514 5.514 3 C 0.119 3.881 4 C 0.260 3.740 5 N -0.485 5.485 6 C -0.020 4.020 7 C -0.054 4.054 8 N -0.503 5.503 9 C 0.487 3.513 10 F -0.187 7.187 11 F -0.172 7.172 12 C 0.105 3.895 13 C 0.053 3.947 14 C -0.461 4.461 15 H 0.057 0.943 16 C 0.067 3.933 17 N -0.884 5.884 18 Si 0.875 3.125 19 H -0.273 1.273 20 H -0.285 1.285 21 H -0.285 1.285 22 C -0.217 4.217 23 C -0.153 4.153 24 H 0.060 0.940 25 H 0.076 0.924 26 H 0.014 0.986 27 H 0.098 0.902 28 H 0.061 0.939 29 H 0.173 0.827 30 H 0.177 0.823 31 H 0.162 0.838 32 H 0.075 0.925 33 H 0.007 0.993 34 H 0.257 0.743 35 H 0.061 0.939 36 H 0.075 0.925 37 H 0.083 0.917 38 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.357 9.565 -4.979 11.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.238 5.238 3 C -0.011 4.011 4 C -0.002 4.002 5 N -0.204 5.204 6 C -0.166 4.166 7 C -0.184 4.184 8 N -0.197 5.197 9 C 0.352 3.648 10 F -0.168 7.168 11 F -0.153 7.153 12 C -0.022 4.022 13 C 0.052 3.948 14 C -0.499 4.499 15 H 0.076 0.924 16 C -0.134 4.134 17 N -0.522 5.522 18 Si 0.703 3.297 19 H -0.198 1.198 20 H -0.211 1.211 21 H -0.211 1.211 22 C -0.254 4.254 23 C -0.191 4.191 24 H 0.079 0.921 25 H 0.095 0.905 26 H 0.032 0.968 27 H 0.117 0.883 28 H 0.079 0.921 29 H 0.190 0.810 30 H 0.195 0.805 31 H 0.179 0.821 32 H 0.094 0.906 33 H 0.025 0.975 34 H 0.067 0.933 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.483 9.387 -4.827 10.843 hybrid contribution 1.080 -0.042 -0.794 1.341 sum -1.403 9.345 -5.621 10.996 Atomic orbital electron populations 1.22399 0.87616 1.02389 0.99332 1.61744 1.07647 1.08742 1.45687 1.20724 1.02263 0.90546 0.87589 1.23379 0.87580 0.98334 0.90951 1.70328 1.21766 1.14294 1.14013 1.22305 0.97665 1.04505 0.92169 1.22627 0.98345 1.02420 0.94967 1.46663 1.18615 1.41294 1.13169 1.21676 0.74910 0.95683 0.72577 1.93064 1.74518 1.89552 1.59686 1.93078 1.80341 1.96976 1.44910 1.21729 0.99000 0.94366 0.87131 1.18770 0.93230 0.88494 0.94329 1.20300 0.95416 1.39387 0.94839 0.92443 1.24905 0.97430 0.95558 0.95505 1.69988 1.05859 1.49616 1.26765 0.86808 0.79147 0.78963 0.84750 1.19767 1.21121 1.21086 1.23059 0.91664 1.04361 1.06294 1.22515 0.98979 1.01951 0.95671 0.92147 0.90507 0.96760 0.88349 0.92055 0.81028 0.80538 0.82150 0.90636 0.97510 0.93313 0.92042 0.90668 0.89829 0.92233 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.55 9.11 60.07 0.55 1.10 16 2 N -0.51 -9.81 4.38 -244.38 -1.07 -10.88 16 3 C 0.12 2.02 5.18 -4.98 -0.03 1.99 16 4 C 0.26 4.36 6.56 -155.42 -1.02 3.34 16 5 N -0.49 -8.10 10.78 -10.81 -0.12 -8.21 16 6 C -0.02 -0.28 11.87 -17.81 -0.21 -0.49 16 7 C -0.05 -0.71 11.09 -16.56 -0.18 -0.89 16 8 N -0.50 -7.71 3.14 -119.65 -0.38 -8.08 16 9 C 0.49 7.18 6.38 59.85 0.38 7.56 16 10 F -0.19 -2.56 16.95 2.25 0.04 -2.52 16 11 F -0.17 -2.81 14.93 2.25 0.03 -2.78 16 12 C 0.10 2.19 4.87 -3.82 -0.02 2.17 16 13 C 0.05 1.22 1.22 -155.66 -0.19 1.03 16 14 C -0.46 -11.80 8.55 -34.44 -0.29 -12.09 16 15 H 0.06 1.52 7.81 -52.49 -0.41 1.11 16 16 C 0.07 1.75 5.43 -17.82 -0.10 1.65 16 17 N -0.88 -23.83 12.72 55.43 0.70 -23.12 16 18 Si 0.88 20.06 29.54 -169.99 -5.02 15.04 16 19 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 20 H -0.28 -6.41 7.11 56.52 0.40 -6.01 16 21 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 22 C -0.22 -4.56 8.35 -26.69 -0.22 -4.78 16 23 C -0.15 -3.49 9.25 -26.69 -0.25 -3.73 16 24 H 0.06 1.08 7.05 -51.93 -0.37 0.71 16 25 H 0.08 1.44 6.12 -51.93 -0.32 1.13 16 26 H 0.01 0.24 8.13 -51.93 -0.42 -0.19 16 27 H 0.10 1.68 5.52 -51.93 -0.29 1.39 16 28 H 0.06 0.99 8.05 -51.93 -0.42 0.57 16 29 H 0.17 1.80 8.06 -52.48 -0.42 1.38 16 30 H 0.18 1.77 8.06 -52.49 -0.42 1.34 16 31 H 0.16 2.32 8.14 -51.93 -0.42 1.90 16 32 H 0.08 1.71 7.73 -51.93 -0.40 1.31 16 33 H 0.01 0.14 8.00 -51.93 -0.42 -0.28 16 34 H 0.26 6.70 8.32 -40.82 -0.34 6.37 16 35 H 0.06 1.18 8.04 -51.93 -0.42 0.76 16 36 H 0.07 1.59 8.14 -51.93 -0.42 1.17 16 37 H 0.08 2.06 8.14 -51.93 -0.42 1.64 16 38 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 LS Contribution 325.05 15.07 4.90 4.90 Total: -1.00 -28.07 325.05 -7.62 -35.69 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -5.13 Total: 3.11 kcal Atomic # 6 Polarization: -1.55 SS G_CDS: -1.58 Total: -3.13 kcal Atomic # 7 Polarization: -49.45 SS G_CDS: -0.86 Total: -50.30 kcal Atomic # 9 Polarization: -5.37 SS G_CDS: 0.07 Total: -5.30 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.04 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -28.07 -7.62 -35.69 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602763230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.650 kcal (2) G-P(sol) polarization free energy of solvation -28.074 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.577 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.615 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.961 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds