Wall clock time and date at job start Tue Mar 31 2020 06:08:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46901 * 1 3 3 C 1.46900 * 110.99987 * 2 1 4 4 C 1.50698 * 109.46749 * 288.13999 * 3 2 1 5 5 N 1.30503 * 125.64635 * 94.18880 * 4 3 2 6 6 C 1.34125 * 109.25677 * 180.14322 * 5 4 3 7 7 C 1.34676 * 108.01979 * 359.61816 * 6 5 4 8 8 N 1.35041 * 125.65317 * 273.90683 * 4 3 2 9 9 C 1.46497 * 126.39717 * 0.02562 * 8 4 3 10 10 F 1.39901 * 109.46971 * 203.01918 * 9 8 4 11 11 F 1.39899 * 109.47200 * 323.02026 * 9 8 4 12 12 C 1.46904 * 110.99568 * 123.95291 * 2 1 3 13 13 C 1.52995 * 109.47095 * 72.11851 * 12 2 1 14 14 C 1.50706 * 115.55537 * 55.77493 * 13 12 2 15 15 H 1.07997 * 119.99561 * 264.79894 * 14 13 12 16 16 C 1.37874 * 120.00027 * 84.79107 * 14 13 12 17 17 N 1.31511 * 120.00286 * 2.03021 * 16 14 13 18 18 Si 1.86801 * 119.99684 * 182.02349 * 16 14 13 19 19 H 1.48494 * 109.47371 * 0.02562 * 18 16 14 20 20 H 1.48498 * 109.46918 * 120.00805 * 18 16 14 21 21 H 1.48503 * 109.47080 * 240.00303 * 18 16 14 22 22 C 1.53000 * 117.49712 * 270.09914 * 13 12 2 23 23 C 1.53007 * 117.49694 * 201.44216 * 13 12 2 24 24 H 1.08998 * 109.46909 * 57.54903 * 1 2 3 25 25 H 1.09000 * 109.47217 * 177.54144 * 1 2 3 26 26 H 1.09001 * 109.47341 * 297.54380 * 1 2 3 27 27 H 1.09002 * 109.46689 * 168.14778 * 3 2 1 28 28 H 1.08994 * 109.47351 * 48.14407 * 3 2 1 29 29 H 1.08003 * 125.99188 * 179.88014 * 6 5 4 30 30 H 1.07995 * 126.58782 * 180.25377 * 7 6 5 31 31 H 1.08998 * 109.47323 * 83.01923 * 9 8 4 32 32 H 1.09000 * 109.46575 * 192.11308 * 12 2 1 33 33 H 1.08994 * 109.47458 * 312.11192 * 12 2 1 34 34 H 0.96998 * 120.00367 * 185.01340 * 17 16 14 35 35 H 1.09000 * 117.49991 * 0.02562 * 22 13 12 36 36 H 1.09000 * 117.49675 * 145.02236 * 22 13 12 37 37 H 1.08996 * 117.49717 * 214.97587 * 23 13 12 38 38 H 1.09001 * 117.49462 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.7625 1.9988 -1.3502 5 7 0.7402 2.7410 -1.6778 6 6 0.8625 3.1223 -2.9579 7 6 2.0082 2.6034 -3.4395 8 7 2.5795 1.8907 -2.4200 9 6 3.8413 1.1487 -2.4786 10 9 4.6396 1.6668 -3.5040 11 9 4.5123 1.2727 -1.2573 12 6 1.9954 -0.7660 1.1377 13 6 1.7646 -2.2593 0.8975 14 6 2.3340 -2.8070 -0.3858 15 1 1.7092 -2.8863 -1.2632 16 6 3.6524 -3.2065 -0.4399 17 7 4.4023 -3.1472 0.6388 18 14 4.3736 -3.8324 -2.0454 19 1 3.3310 -3.8000 -3.1023 20 1 5.5120 -2.9677 -2.4470 21 1 4.8512 -5.2267 -1.8633 22 6 0.4512 -2.8610 1.4012 23 6 1.7647 -3.1796 2.1198 24 1 -0.3633 0.5514 -0.8672 25 1 -0.3633 -1.0267 -0.0441 26 1 -0.3634 0.4752 0.9112 27 1 3.0646 1.3501 0.2111 28 1 1.4855 1.9564 0.7654 29 1 0.1666 3.7408 -3.5052 30 1 2.4009 2.7264 -4.4380 31 1 3.6353 0.0965 -2.6748 32 1 3.0636 -0.5754 1.2408 33 1 1.4822 -0.4610 2.0496 34 1 5.3474 -3.3587 0.5848 35 1 -0.2487 -2.1930 1.9033 36 1 -0.0009 -3.6533 0.8045 37 1 2.1761 -4.1813 1.9955 38 1 1.9295 -2.7212 3.0949 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000602763230.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:10 Heat of formation + Delta-G solvation = -5.415926 kcal Electronic energy + Delta-G solvation = -23746.997062 eV Core-core repulsion = 20069.437001 eV Total energy + Delta-G solvation = -3677.560061 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -50.45073 -48.56547 -43.07890 -39.27682 -36.78255 -34.50995 -33.84590 -31.49698 -28.54461 -28.11531 -27.23490 -26.78704 -23.41513 -22.82320 -22.48423 -21.44137 -20.83233 -19.21429 -19.10623 -18.32043 -17.87783 -16.70223 -16.60372 -16.21175 -15.96915 -15.66360 -15.37247 -15.31556 -15.14940 -14.91810 -14.74264 -14.46369 -14.25043 -13.68153 -13.43382 -13.28291 -13.04316 -12.82085 -12.70495 -12.45856 -12.42262 -12.24306 -11.91926 -11.24085 -11.17640 -11.04506 -10.80214 -10.26945 -9.86460 -9.49883 -9.05568 -7.97157 -6.03617 0.78792 1.07067 1.39549 1.46906 1.54540 2.02176 2.49593 2.54534 3.05449 3.06215 3.31629 3.44749 3.52848 3.62358 3.69146 4.20987 4.33300 4.43718 4.49472 4.53918 4.65759 4.67572 4.71348 4.79571 4.86981 5.03742 5.09080 5.15420 5.23828 5.34759 5.68332 5.71097 5.72248 5.80847 5.91270 6.25055 6.31226 6.61223 6.97033 6.98998 7.60594 9.11425 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.014927 B = 0.007624 C = 0.005752 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1875.385687 B = 3671.752734 C = 4867.070817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.525 5.525 3 C 0.125 3.875 4 C 0.236 3.764 5 N -0.502 5.502 6 C -0.031 4.031 7 C -0.045 4.045 8 N -0.508 5.508 9 C 0.489 3.511 10 F -0.179 7.179 11 F -0.184 7.184 12 C 0.119 3.881 13 C 0.032 3.968 14 C -0.466 4.466 15 H 0.045 0.955 16 C 0.028 3.972 17 N -0.910 5.910 18 Si 0.927 3.073 19 H -0.269 1.269 20 H -0.277 1.277 21 H -0.291 1.291 22 C -0.192 4.192 23 C -0.161 4.161 24 H 0.060 0.940 25 H 0.066 0.934 26 H 0.026 0.974 27 H 0.092 0.908 28 H 0.068 0.932 29 H 0.203 0.797 30 H 0.210 0.790 31 H 0.163 0.837 32 H 0.052 0.948 33 H 0.019 0.981 34 H 0.255 0.745 35 H 0.086 0.914 36 H 0.071 0.929 37 H 0.057 0.943 38 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.043 10.586 -6.215 12.647 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.250 5.250 3 C -0.004 4.004 4 C -0.026 4.026 5 N -0.222 5.222 6 C -0.177 4.177 7 C -0.174 4.174 8 N -0.202 5.202 9 C 0.354 3.646 10 F -0.160 7.160 11 F -0.165 7.165 12 C -0.008 4.008 13 C 0.031 3.969 14 C -0.504 4.504 15 H 0.063 0.937 16 C -0.171 4.171 17 N -0.549 5.549 18 Si 0.754 3.246 19 H -0.193 1.193 20 H -0.202 1.202 21 H -0.218 1.218 22 C -0.229 4.229 23 C -0.199 4.199 24 H 0.078 0.922 25 H 0.084 0.916 26 H 0.044 0.956 27 H 0.110 0.890 28 H 0.086 0.914 29 H 0.220 0.780 30 H 0.227 0.773 31 H 0.180 0.820 32 H 0.070 0.930 33 H 0.037 0.963 34 H 0.064 0.936 35 H 0.104 0.896 36 H 0.090 0.910 37 H 0.076 0.924 38 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -3.181 10.417 -6.075 12.471 hybrid contribution 1.253 -0.329 -0.463 1.375 sum -1.928 10.088 -6.537 12.175 Atomic orbital electron populations 1.22283 0.86820 1.01752 0.99891 1.61643 1.08374 1.10023 1.44928 1.20604 1.01826 0.89445 0.88542 1.23190 0.88533 0.99687 0.91208 1.70292 1.21876 1.14400 1.15612 1.22885 0.98570 1.04853 0.91355 1.23254 0.97811 1.00724 0.95631 1.46755 1.18550 1.41470 1.13461 1.21663 0.74876 0.95818 0.72276 1.93078 1.74276 1.89481 1.59169 1.93055 1.80650 1.97030 1.45796 1.21423 0.97812 0.93279 0.88331 1.18888 0.94771 0.89722 0.93505 1.20437 0.95449 1.39141 0.95389 0.93710 1.25440 0.97822 0.95916 0.97885 1.70088 1.05851 1.50759 1.28226 0.85992 0.78690 0.78030 0.81910 1.19295 1.20244 1.21767 1.23019 0.91057 1.03872 1.04958 1.22415 1.00520 1.00701 0.96270 0.92165 0.91557 0.95570 0.88958 0.91379 0.78022 0.77299 0.82019 0.92953 0.96331 0.93567 0.89604 0.90993 0.92421 0.91164 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 9.11 127.69 1.16 2.56 16 2 N -0.53 -19.67 4.38 -927.07 -4.06 -23.73 16 3 C 0.13 4.19 5.18 85.56 0.44 4.63 16 4 C 0.24 7.63 6.56 138.13 0.91 8.53 16 5 N -0.50 -15.89 10.78 -188.13 -2.03 -17.91 16 6 C -0.03 -0.77 11.87 83.53 0.99 0.22 16 7 C -0.04 -1.06 11.09 83.09 0.92 -0.14 16 8 N -0.51 -14.73 3.14 -532.46 -1.67 -16.40 16 9 C 0.49 13.87 6.38 127.77 0.82 14.69 16 10 F -0.18 -4.56 16.95 44.97 0.76 -3.79 16 11 F -0.18 -5.98 14.93 44.97 0.67 -5.31 16 12 C 0.12 4.94 4.87 86.30 0.42 5.36 16 13 C 0.03 1.47 1.22 -52.93 -0.06 1.40 16 14 C -0.47 -23.87 8.55 25.60 0.22 -23.65 16 15 H 0.04 2.36 7.81 -2.91 -0.02 2.34 16 16 C 0.03 1.47 5.43 84.65 0.46 1.93 16 17 N -0.91 -49.59 12.72 21.45 0.27 -49.32 16 18 Si 0.93 41.14 29.54 68.60 2.03 43.17 16 19 H -0.27 -11.61 7.11 99.48 0.71 -10.90 16 20 H -0.28 -11.84 7.11 99.48 0.71 -11.13 16 21 H -0.29 -13.17 7.11 99.48 0.71 -12.46 16 22 C -0.19 -7.85 8.35 30.62 0.26 -7.59 16 23 C -0.16 -7.31 9.25 30.62 0.28 -7.03 16 24 H 0.06 2.07 7.05 -2.39 -0.02 2.05 16 25 H 0.07 2.40 6.12 -2.39 -0.01 2.38 16 26 H 0.03 0.82 8.13 -2.39 -0.02 0.81 16 27 H 0.09 3.16 5.52 -2.39 -0.01 3.15 16 28 H 0.07 2.15 8.05 -2.39 -0.02 2.13 16 29 H 0.20 3.55 8.06 -2.91 -0.02 3.53 16 30 H 0.21 3.37 8.06 -2.91 -0.02 3.35 16 31 H 0.16 4.55 8.14 -2.39 -0.02 4.53 16 32 H 0.05 2.40 7.73 -2.39 -0.02 2.38 16 33 H 0.02 0.72 8.00 -2.39 -0.02 0.70 16 34 H 0.26 13.47 8.32 -92.71 -0.77 12.70 16 35 H 0.09 3.09 8.04 -2.39 -0.02 3.07 16 36 H 0.07 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.06 2.89 8.14 -2.39 -0.02 2.87 16 38 H 0.07 2.99 8.14 -2.39 -0.02 2.97 16 Total: -1.00 -58.84 325.05 3.85 -54.99 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: 1.06 Total: 17.40 kcal Atomic # 6 Polarization: -5.90 SS G_CDS: 6.81 Total: 0.91 kcal Atomic # 7 Polarization: -99.89 SS G_CDS: -7.48 Total: -107.37 kcal Atomic # 9 Polarization: -10.53 SS G_CDS: 1.43 Total: -9.10 kcal Atomic # 14 Polarization: 41.14 SS G_CDS: 2.03 Total: 43.17 kcal Total: -58.84 3.85 -54.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000602763230.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.570 kcal (2) G-P(sol) polarization free energy of solvation -58.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.269 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.853 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds