Wall clock time and date at job start Tue Mar 31 2020 05:25:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42891 * 114.00258 * 2 1 4 4 C 1.52997 * 109.47308 * 180.02562 * 3 2 1 5 5 S 1.81401 * 109.47326 * 179.97438 * 4 3 2 6 6 C 1.81400 * 103.00097 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.46953 * 179.97438 * 8 7 6 10 10 C 1.35318 * 125.86451 * 124.71834 * 9 8 7 11 11 C 1.35356 * 106.17535 * 179.90675 * 10 9 8 12 12 C 1.50693 * 126.75194 * 180.12622 * 11 10 9 13 13 C 1.50700 * 109.47142 * 125.24594 * 12 11 10 14 14 H 1.07997 * 119.99974 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99969 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00092 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99986 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47059 * 59.99444 * 17 15 13 19 19 H 1.48496 * 109.47206 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46869 * 299.99717 * 17 15 13 21 21 N 1.33772 * 106.49303 * 0.34945 * 11 10 9 22 22 N 1.28635 * 108.88814 * 359.77516 * 21 11 10 23 23 H 1.09002 * 109.46773 * 299.99282 * 1 2 3 24 24 H 1.08999 * 109.47603 * 59.99855 * 1 2 3 25 25 H 1.09005 * 109.47488 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47104 * 60.00187 * 3 2 1 27 27 H 1.09003 * 109.47102 * 300.00135 * 3 2 1 28 28 H 1.09007 * 109.47220 * 60.00038 * 4 3 2 29 29 H 1.08998 * 109.47223 * 300.00286 * 4 3 2 30 30 H 1.09001 * 109.46713 * 60.00360 * 6 5 4 31 31 H 1.08993 * 109.47294 * 299.99893 * 6 5 4 32 32 H 1.09001 * 109.46801 * 300.00406 * 7 6 5 33 33 H 1.09001 * 109.46998 * 60.00003 * 7 6 5 34 34 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 35 35 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 36 36 H 1.08003 * 126.91371 * 0.02562 * 10 9 8 37 37 H 1.09004 * 109.46936 * 245.24157 * 12 11 10 38 38 H 1.08997 * 109.47239 * 5.24120 * 12 11 10 39 39 H 0.97002 * 119.99909 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 -0.0006 5 16 4.2733 2.8417 -0.0014 6 6 6.0540 2.4955 -0.0013 7 6 6.8300 3.8142 -0.0026 8 6 8.3318 3.5222 -0.0031 9 7 9.0747 4.7848 -0.0050 10 6 10.0156 5.1524 0.8954 11 6 10.4393 6.3812 0.5178 12 6 11.4879 7.2222 1.1990 13 6 12.5515 7.6038 0.2018 14 1 12.4758 7.2702 -0.8225 15 6 13.6216 8.3778 0.5977 16 7 13.7140 8.7835 1.8452 17 14 14.9404 8.8502 -0.6382 18 1 14.3261 9.6263 -1.7452 19 1 15.9737 9.6790 0.0330 20 1 15.5694 7.6211 -1.1849 21 7 9.7405 6.7043 -0.5762 22 7 8.9407 5.7375 -0.8600 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6887 1.8462 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8567 0.6437 -0.8909 29 1 3.8574 0.6434 0.8891 30 1 6.3125 1.9214 -0.8911 31 1 6.3126 1.9222 0.8889 32 1 6.5712 4.3871 -0.8930 33 1 6.5714 4.3887 0.8869 34 1 8.5908 2.9490 0.8870 35 1 8.5899 2.9479 -0.8929 36 1 10.3606 4.5796 1.7436 37 1 11.0258 8.1242 1.6004 38 1 11.9390 6.6526 2.0114 39 1 14.4667 9.3284 2.1235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603230789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:24 Heat of formation + Delta-G solvation = 36.641772 kcal Electronic energy + Delta-G solvation = -18662.662553 eV Core-core repulsion = 15540.766637 eV Total energy + Delta-G solvation = -3121.895916 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -42.51433 -38.43836 -36.08694 -33.48832 -32.30180 -32.11838 -31.02494 -27.79293 -27.05734 -26.81270 -23.89713 -23.40095 -22.41666 -21.15231 -19.96187 -17.34499 -17.11103 -16.74148 -16.38045 -16.12627 -15.94439 -15.50591 -15.35772 -14.52612 -14.35388 -14.13022 -14.02877 -13.27479 -13.05760 -12.58964 -12.43697 -12.25719 -12.12392 -11.97252 -11.79567 -11.59687 -11.35978 -10.96567 -10.70002 -10.64637 -10.43655 -10.24938 -10.08133 -9.68786 -9.44223 -9.28790 -8.42333 -8.12696 -8.12075 -5.97598 -3.98227 0.98100 2.05800 2.23372 2.77458 3.37112 3.39655 3.42287 3.44149 3.52839 4.30864 4.33639 4.36992 4.43687 4.52517 4.59010 4.72139 4.82123 4.82511 4.83698 4.98781 5.06799 5.15389 5.15418 5.19708 5.21398 5.39244 5.50477 5.76462 5.88521 6.08214 6.31597 6.53737 7.13108 7.17752 7.53943 7.63617 8.00030 8.38682 9.04881 9.30866 9.64508 11.13450 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.076958 B = 0.001985 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.748972 B =14103.837426 C =14175.644252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.392 6.392 3 C 0.078 3.922 4 C -0.093 4.093 5 S -0.237 6.237 6 C -0.081 4.081 7 C -0.118 4.118 8 C 0.129 3.871 9 N -0.306 5.306 10 C -0.082 4.082 11 C 0.034 3.966 12 C 0.092 3.908 13 C -0.505 4.505 14 H 0.058 0.942 15 C 0.057 3.943 16 N -0.898 5.898 17 Si 0.897 3.103 18 H -0.275 1.275 19 H -0.287 1.287 20 H -0.278 1.278 21 N -0.260 5.260 22 N -0.108 5.108 23 H 0.044 0.956 24 H 0.044 0.956 25 H 0.088 0.912 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.090 0.910 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.088 0.912 32 H 0.093 0.907 33 H 0.082 0.918 34 H 0.102 0.898 35 H 0.094 0.906 36 H 0.182 0.818 37 H 0.039 0.961 38 H 0.036 0.964 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.809 -19.812 -0.622 30.219 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.311 6.311 3 C 0.000 4.000 4 C -0.242 4.242 5 S -0.011 6.011 6 C -0.230 4.230 7 C -0.157 4.157 8 C 0.005 3.995 9 N -0.102 5.102 10 C -0.231 4.231 11 C -0.103 4.103 12 C 0.053 3.947 13 C -0.543 4.543 14 H 0.077 0.923 15 C -0.144 4.144 16 N -0.538 5.538 17 Si 0.725 3.275 18 H -0.201 1.201 19 H -0.213 1.213 20 H -0.204 1.204 21 N -0.127 5.127 22 N -0.086 5.086 23 H 0.062 0.938 24 H 0.062 0.938 25 H 0.107 0.893 26 H 0.078 0.922 27 H 0.079 0.921 28 H 0.109 0.891 29 H 0.109 0.891 30 H 0.107 0.893 31 H 0.106 0.894 32 H 0.111 0.889 33 H 0.101 0.899 34 H 0.120 0.880 35 H 0.112 0.888 36 H 0.199 0.801 37 H 0.057 0.943 38 H 0.055 0.945 39 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -23.859 -18.446 -1.767 30.209 hybrid contribution 1.678 -1.298 0.390 2.157 sum -22.181 -19.743 -1.377 29.727 Atomic orbital electron populations 1.22777 0.80282 1.03046 1.00336 1.87851 1.20262 1.27421 1.95554 1.22095 0.91110 0.85096 1.01669 1.23219 0.97477 0.97154 1.06315 1.86997 1.04572 1.11330 1.98182 1.23268 0.92898 1.01139 1.05694 1.21580 0.92186 0.96169 1.05782 1.21803 0.90761 0.82104 1.04839 1.47120 1.28038 1.15133 1.19884 1.23383 0.98822 1.00322 1.00531 1.23043 0.99114 0.94185 0.93917 1.17725 0.88940 0.93279 0.94718 1.21012 1.05499 1.31843 0.95979 0.92342 1.24968 0.98162 0.95905 0.95331 1.69935 1.31185 1.36707 1.15962 0.86571 0.81099 0.78489 0.81367 1.20096 1.21314 1.20357 1.75082 1.05369 1.18086 1.14211 1.78176 1.21165 0.94070 1.15240 0.93781 0.93765 0.89313 0.92153 0.92137 0.89100 0.89122 0.89253 0.89371 0.88859 0.89903 0.87995 0.88780 0.80123 0.94283 0.94545 0.92874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 11.01 101.05 1.11 1.27 16 2 O -0.39 -3.09 10.70 -35.23 -0.38 -3.47 16 3 C 0.08 0.54 5.95 37.16 0.22 0.76 16 4 C -0.09 -0.64 6.31 37.16 0.23 -0.41 16 5 S -0.24 -2.03 21.74 -107.50 -2.34 -4.37 16 6 C -0.08 -0.56 5.94 37.16 0.22 -0.33 16 7 C -0.12 -1.09 5.35 -26.73 -0.14 -1.24 16 8 C 0.13 1.27 6.46 -4.05 -0.03 1.24 16 9 N -0.31 -4.97 3.44 -61.26 -0.21 -5.18 16 10 C -0.08 -1.48 11.49 -17.04 -0.20 -1.67 16 11 C 0.03 0.80 6.44 -82.78 -0.53 0.26 16 12 C 0.09 2.42 5.55 -29.04 -0.16 2.26 16 13 C -0.50 -14.67 9.09 -34.44 -0.31 -14.98 16 14 H 0.06 1.73 7.74 -52.49 -0.41 1.33 16 15 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 16 N -0.90 -26.72 13.29 55.43 0.74 -25.98 16 17 Si 0.90 22.20 29.54 -169.99 -5.02 17.18 16 18 H -0.28 -6.82 7.11 56.52 0.40 -6.41 16 19 H -0.29 -6.96 7.11 56.52 0.40 -6.55 16 20 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 21 N -0.26 -6.25 12.40 33.29 0.41 -5.84 16 22 N -0.11 -2.19 12.91 60.35 0.78 -1.41 16 23 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 24 H 0.04 0.18 8.14 -51.93 -0.42 -0.24 16 25 H 0.09 0.32 8.14 -51.93 -0.42 -0.10 16 26 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 28 H 0.09 0.59 8.14 -51.92 -0.42 0.17 16 29 H 0.09 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.09 0.51 8.14 -51.92 -0.42 0.09 16 31 H 0.09 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.09 1.04 8.12 -51.93 -0.42 0.62 16 33 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 34 H 0.10 0.70 8.07 -51.93 -0.42 0.28 16 35 H 0.09 0.79 8.14 -51.93 -0.42 0.37 16 36 H 0.18 2.54 8.06 -52.48 -0.42 2.12 16 37 H 0.04 1.09 8.14 -51.93 -0.42 0.67 16 38 H 0.04 0.94 8.12 -51.93 -0.42 0.52 16 39 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 LS Contribution 350.49 15.07 5.28 5.28 Total: -1.00 -34.45 350.49 -6.72 -41.16 By element: Atomic # 1 Polarization: 0.20 SS G_CDS: -6.30 Total: -6.10 kcal Atomic # 6 Polarization: -11.60 SS G_CDS: 0.32 Total: -11.28 kcal Atomic # 7 Polarization: -40.13 SS G_CDS: 1.72 Total: -38.41 kcal Atomic # 8 Polarization: -3.09 SS G_CDS: -0.38 Total: -3.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.18 kcal Atomic # 16 Polarization: -2.03 SS G_CDS: -2.34 Total: -4.37 kcal Total LS contribution 5.28 Total: 5.28 kcal Total: -34.45 -6.72 -41.16 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603230789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 77.805 kcal (2) G-P(sol) polarization free energy of solvation -34.447 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.357 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.716 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.163 kcal (6) G-S(sol) free energy of system = (1) + (5) 36.642 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds