Wall clock time and date at job start Tue Mar 31 2020 05:25:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42891 * 114.00258 * 2 1 4 4 C 1.52997 * 109.47308 * 180.02562 * 3 2 1 5 5 S 1.81401 * 109.47326 * 179.97438 * 4 3 2 6 6 C 1.81400 * 103.00097 * 179.97438 * 5 4 3 7 7 C 1.53006 * 109.47145 * 179.97438 * 6 5 4 8 8 C 1.52997 * 109.47127 * 180.02562 * 7 6 5 9 9 N 1.46496 * 109.46953 * 179.97438 * 8 7 6 10 10 C 1.35318 * 125.86451 * 124.71834 * 9 8 7 11 11 C 1.35356 * 106.17535 * 179.90675 * 10 9 8 12 12 C 1.50693 * 126.75194 * 180.12622 * 11 10 9 13 13 C 1.50700 * 109.47142 * 125.24594 * 12 11 10 14 14 H 1.07997 * 119.99974 * 359.97438 * 13 12 11 15 15 C 1.37879 * 119.99969 * 180.02562 * 13 12 11 16 16 N 1.31509 * 120.00092 * 359.97438 * 15 13 12 17 17 Si 1.86805 * 119.99986 * 179.97438 * 15 13 12 18 18 H 1.48500 * 109.47059 * 59.99444 * 17 15 13 19 19 H 1.48496 * 109.47206 * 179.97438 * 17 15 13 20 20 H 1.48500 * 109.46869 * 299.99717 * 17 15 13 21 21 N 1.33772 * 106.49303 * 0.34945 * 11 10 9 22 22 N 1.28635 * 108.88814 * 359.77516 * 21 11 10 23 23 H 1.09002 * 109.46773 * 299.99282 * 1 2 3 24 24 H 1.08999 * 109.47603 * 59.99855 * 1 2 3 25 25 H 1.09005 * 109.47488 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.47104 * 60.00187 * 3 2 1 27 27 H 1.09003 * 109.47102 * 300.00135 * 3 2 1 28 28 H 1.09007 * 109.47220 * 60.00038 * 4 3 2 29 29 H 1.08998 * 109.47223 * 300.00286 * 4 3 2 30 30 H 1.09001 * 109.46713 * 60.00360 * 6 5 4 31 31 H 1.08993 * 109.47294 * 299.99893 * 6 5 4 32 32 H 1.09001 * 109.46801 * 300.00406 * 7 6 5 33 33 H 1.09001 * 109.46998 * 60.00003 * 7 6 5 34 34 H 1.08996 * 109.46952 * 300.00302 * 8 7 6 35 35 H 1.09001 * 109.46832 * 60.00321 * 8 7 6 36 36 H 1.08003 * 126.91371 * 0.02562 * 10 9 8 37 37 H 1.09004 * 109.46936 * 245.24157 * 12 11 10 38 38 H 1.08997 * 109.47239 * 5.24120 * 12 11 10 39 39 H 0.97002 * 119.99909 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3053 0.0000 4 6 3.5354 1.1845 -0.0006 5 16 4.2733 2.8417 -0.0014 6 6 6.0540 2.4955 -0.0013 7 6 6.8300 3.8142 -0.0026 8 6 8.3318 3.5222 -0.0031 9 7 9.0747 4.7848 -0.0050 10 6 10.0156 5.1524 0.8954 11 6 10.4393 6.3812 0.5178 12 6 11.4879 7.2222 1.1990 13 6 12.5515 7.6038 0.2018 14 1 12.4758 7.2702 -0.8225 15 6 13.6216 8.3778 0.5977 16 7 13.7140 8.7835 1.8452 17 14 14.9404 8.8502 -0.6382 18 1 14.3261 9.6263 -1.7452 19 1 15.9737 9.6790 0.0330 20 1 15.5694 7.6211 -1.1849 21 7 9.7405 6.7043 -0.5762 22 7 8.9407 5.7375 -0.8600 23 1 -0.3633 0.5137 0.8901 24 1 -0.3634 0.5138 -0.8899 25 1 -0.3634 -1.0277 0.0005 26 1 1.6887 1.8462 0.8900 27 1 1.6886 1.8463 -0.8900 28 1 3.8567 0.6437 -0.8909 29 1 3.8574 0.6434 0.8891 30 1 6.3125 1.9214 -0.8911 31 1 6.3126 1.9222 0.8889 32 1 6.5712 4.3871 -0.8930 33 1 6.5714 4.3887 0.8869 34 1 8.5908 2.9490 0.8870 35 1 8.5899 2.9479 -0.8929 36 1 10.3606 4.5796 1.7436 37 1 11.0258 8.1242 1.6004 38 1 11.9390 6.6526 2.0114 39 1 14.4667 9.3284 2.1235 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603230789.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:25:23 Heat of formation + Delta-G solvation = 13.781815 kcal Electronic energy + Delta-G solvation = -18663.653835 eV Core-core repulsion = 15540.766637 eV Total energy + Delta-G solvation = -3122.887198 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.125 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -44.02248 -38.94315 -37.11918 -35.44116 -33.61703 -32.79699 -32.62717 -29.47901 -28.07738 -27.37124 -25.46721 -24.51962 -23.28400 -22.56633 -21.39128 -18.58252 -18.15293 -17.80615 -17.32271 -17.19017 -16.85354 -16.54711 -16.31492 -15.93955 -15.57415 -14.89276 -14.83800 -14.54311 -14.30343 -13.77042 -13.71085 -13.52569 -13.06587 -12.87458 -12.72900 -12.64850 -12.56217 -12.50402 -12.25802 -12.07261 -11.81891 -11.65610 -11.35382 -11.02525 -10.80664 -10.74301 -10.57124 -9.84167 -8.76792 -8.17698 -6.26458 0.38578 0.80672 1.40954 1.44645 1.48950 1.52365 1.65382 1.78703 2.45432 2.90986 3.15046 3.53051 3.67692 3.77306 3.83460 3.87789 3.95651 4.10763 4.29571 4.32817 4.33178 4.46737 4.47361 4.50345 4.53140 4.65488 4.68739 4.71365 4.83085 4.91018 5.06774 5.31992 5.46386 5.55976 5.77695 5.87151 6.07306 6.23898 6.81616 7.40128 7.73603 8.92914 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.076958 B = 0.001985 C = 0.001975 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 363.748972 B =14103.837426 C =14175.644252 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.411 6.411 3 C 0.077 3.923 4 C -0.078 4.078 5 S -0.288 6.288 6 C -0.066 4.066 7 C -0.110 4.110 8 C 0.117 3.883 9 N -0.286 5.286 10 C -0.049 4.049 11 C -0.012 4.012 12 C 0.102 3.898 13 C -0.526 4.526 14 H 0.044 0.956 15 C 0.009 3.991 16 N -0.926 5.926 17 Si 0.962 3.038 18 H -0.277 1.277 19 H -0.276 1.276 20 H -0.268 1.268 21 N -0.311 5.311 22 N -0.120 5.120 23 H 0.050 0.950 24 H 0.050 0.950 25 H 0.101 0.899 26 H 0.061 0.939 27 H 0.059 0.941 28 H 0.095 0.905 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.112 0.888 32 H 0.068 0.932 33 H 0.069 0.931 34 H 0.146 0.854 35 H 0.117 0.883 36 H 0.227 0.773 37 H 0.006 0.994 38 H 0.035 0.965 39 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.846 -22.429 -0.584 32.021 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 O -0.331 6.331 3 C 0.000 4.000 4 C -0.227 4.227 5 S -0.062 6.062 6 C -0.214 4.214 7 C -0.149 4.149 8 C -0.004 4.004 9 N -0.082 5.082 10 C -0.199 4.199 11 C -0.150 4.150 12 C 0.063 3.937 13 C -0.565 4.565 14 H 0.062 0.938 15 C -0.189 4.189 16 N -0.566 5.566 17 Si 0.786 3.214 18 H -0.202 1.202 19 H -0.200 1.200 20 H -0.193 1.193 21 N -0.178 5.178 22 N -0.099 5.099 23 H 0.069 0.931 24 H 0.069 0.931 25 H 0.119 0.881 26 H 0.079 0.921 27 H 0.078 0.922 28 H 0.114 0.886 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.131 0.869 32 H 0.087 0.913 33 H 0.088 0.912 34 H 0.164 0.836 35 H 0.135 0.865 36 H 0.244 0.756 37 H 0.024 0.976 38 H 0.054 0.946 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -23.933 -21.088 -1.747 31.946 hybrid contribution 1.549 -0.598 0.404 1.709 sum -22.384 -21.685 -1.343 31.195 Atomic orbital electron populations 1.22961 0.78972 1.04130 1.01007 1.87812 1.21807 1.27800 1.95671 1.22104 0.91305 0.84931 1.01675 1.23145 0.97167 0.95498 1.06855 1.87223 1.06985 1.13676 1.98328 1.23210 0.90613 0.99838 1.07753 1.21434 0.92278 0.97207 1.04004 1.22459 0.90154 0.79607 1.08212 1.47583 1.26928 1.15795 1.17859 1.23798 0.97106 0.98404 1.00607 1.22698 1.00499 0.96506 0.95296 1.17379 0.89273 0.92655 0.94353 1.21269 1.06807 1.32483 0.95908 0.93758 1.25786 1.00272 0.95631 0.97233 1.70031 1.31988 1.37078 1.17530 0.85558 0.78426 0.78503 0.78874 1.20239 1.20049 1.19283 1.74987 1.06919 1.20370 1.15513 1.78046 1.20871 0.94602 1.16350 0.93093 0.93134 0.88093 0.92121 0.92234 0.88603 0.88411 0.87545 0.86921 0.91306 0.91204 0.83608 0.86469 0.75627 0.97565 0.94640 0.92503 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.22 11.01 113.37 1.25 1.47 16 2 O -0.41 -5.98 10.70 -148.98 -1.59 -7.58 16 3 C 0.08 0.99 5.95 71.98 0.43 1.42 16 4 C -0.08 -0.94 6.31 71.98 0.45 -0.49 16 5 S -0.29 -4.55 21.74 -56.49 -1.23 -5.78 16 6 C -0.07 -0.69 5.94 71.98 0.43 -0.27 16 7 C -0.11 -1.78 5.35 30.60 0.16 -1.62 16 8 C 0.12 1.83 6.46 86.38 0.56 2.38 16 9 N -0.29 -8.62 3.44 -347.74 -1.20 -9.82 16 10 C -0.05 -1.65 11.49 83.49 0.96 -0.69 16 11 C -0.01 -0.55 6.44 41.60 0.27 -0.28 16 12 C 0.10 5.55 5.55 29.10 0.16 5.71 16 13 C -0.53 -31.36 9.09 25.60 0.23 -31.13 16 14 H 0.04 2.70 7.74 -2.91 -0.02 2.68 16 15 C 0.01 0.53 5.46 84.66 0.46 0.99 16 16 N -0.93 -55.76 13.29 21.45 0.28 -55.47 16 17 Si 0.96 45.79 29.54 68.60 2.03 47.81 16 18 H -0.28 -13.16 7.11 99.48 0.71 -12.45 16 19 H -0.28 -12.49 7.11 99.48 0.71 -11.79 16 20 H -0.27 -12.25 7.11 99.48 0.71 -11.54 16 21 N -0.31 -15.31 12.40 -48.60 -0.60 -15.91 16 22 N -0.12 -4.83 12.91 37.02 0.48 -4.35 16 23 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 24 H 0.05 0.36 8.14 -2.39 -0.02 0.34 16 25 H 0.10 0.59 8.14 -2.38 -0.02 0.57 16 26 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 27 H 0.06 0.75 8.14 -2.39 -0.02 0.74 16 28 H 0.10 1.05 8.14 -2.39 -0.02 1.03 16 29 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.11 0.81 8.14 -2.39 -0.02 0.79 16 31 H 0.11 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.48 8.12 -2.39 -0.02 1.46 16 33 H 0.07 1.33 8.14 -2.39 -0.02 1.32 16 34 H 0.15 1.12 8.07 -2.39 -0.02 1.10 16 35 H 0.12 1.44 8.14 -2.39 -0.02 1.42 16 36 H 0.23 5.34 8.06 -2.91 -0.02 5.32 16 37 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 38 H 0.04 1.88 8.12 -2.39 -0.02 1.86 16 39 H 0.27 15.03 8.31 -92.71 -0.77 14.26 16 Total: -1.00 -77.91 350.49 4.54 -73.36 By element: Atomic # 1 Polarization: -0.79 SS G_CDS: 1.01 Total: 0.22 kcal Atomic # 6 Polarization: -27.86 SS G_CDS: 5.36 Total: -22.50 kcal Atomic # 7 Polarization: -84.51 SS G_CDS: -1.04 Total: -85.55 kcal Atomic # 8 Polarization: -5.98 SS G_CDS: -1.59 Total: -7.58 kcal Atomic # 14 Polarization: 45.79 SS G_CDS: 2.03 Total: 47.81 kcal Atomic # 16 Polarization: -4.55 SS G_CDS: -1.23 Total: -5.78 kcal Total: -77.91 4.54 -73.36 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603230789.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.146 kcal (2) G-P(sol) polarization free energy of solvation -77.908 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.238 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.544 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.364 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds