Wall clock time and date at job start Tue Mar 31 2020 05:35:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00464 * 2 1 4 4 H 1.48504 * 109.47196 * 239.99713 * 3 2 1 5 5 H 1.48504 * 109.46887 * 359.97438 * 3 2 1 6 6 H 1.48502 * 109.47679 * 119.99347 * 3 2 1 7 7 C 1.37884 * 119.99698 * 179.97438 * 2 1 3 8 8 H 1.08002 * 119.99697 * 179.97438 * 7 2 1 9 9 C 1.50702 * 119.99942 * 0.28408 * 7 2 1 10 10 C 1.50700 * 109.46869 * 179.72213 * 9 7 2 11 11 C 1.35348 * 126.75241 * 124.71667 * 10 9 7 12 12 N 1.35310 * 106.17503 * 179.84708 * 11 10 9 13 13 C 1.46503 * 125.86801 * 180.10838 * 12 11 10 14 14 C 1.53007 * 109.46672 * 125.32835 * 13 12 11 15 15 C 1.53004 * 109.47100 * 295.00100 * 14 13 12 16 16 C 1.52993 * 109.47087 * 180.02562 * 15 14 13 17 17 C 1.53006 * 109.47026 * 59.99962 * 16 15 14 18 18 F 1.39901 * 109.47051 * 180.02562 * 17 16 15 19 19 F 1.39904 * 109.46722 * 60.00256 * 17 16 15 20 20 C 1.52995 * 109.47186 * 300.00097 * 17 16 15 21 21 C 1.52993 * 109.47218 * 60.00020 * 20 17 16 22 22 N 1.28712 * 108.26299 * 0.41850 * 12 11 10 23 23 N 1.28632 * 110.17939 * 359.72812 * 22 12 11 24 24 H 0.97005 * 119.99651 * 0.02562 * 1 2 3 25 25 H 1.09004 * 109.46965 * 299.72070 * 9 7 2 26 26 H 1.08994 * 109.46990 * 59.71924 * 9 7 2 27 27 H 1.08000 * 126.91051 * 359.97438 * 11 10 9 28 28 H 1.08989 * 109.47681 * 245.32765 * 13 12 11 29 29 H 1.08998 * 109.46818 * 5.33334 * 13 12 11 30 30 H 1.08996 * 109.47152 * 55.00578 * 14 13 12 31 31 H 1.09004 * 109.47193 * 300.00336 * 15 14 13 32 32 H 1.09004 * 109.46995 * 60.00206 * 15 14 13 33 33 H 1.09004 * 109.47348 * 300.00205 * 16 15 14 34 34 H 1.08997 * 109.47448 * 180.02562 * 16 15 14 35 35 H 1.09004 * 109.47095 * 299.99701 * 20 17 16 36 36 H 1.09004 * 109.46963 * 179.97438 * 20 17 16 37 37 H 1.08997 * 109.47448 * 179.97438 * 21 20 17 38 38 H 1.09004 * 109.47348 * 59.99836 * 21 20 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1031 1.6962 -1.2125 5 1 1.2843 2.7464 -0.0006 6 1 3.1029 1.6964 1.2126 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0001 9 6 1.2509 -2.4992 -0.0054 10 6 2.2302 -3.6447 -0.0104 11 6 2.2870 -4.6655 0.8765 12 7 3.3139 -5.4525 0.4802 13 6 3.7544 -6.6850 1.1383 14 6 3.7703 -7.8283 0.1216 15 6 2.3428 -8.1099 -0.3515 16 6 2.3586 -9.2536 -1.3676 17 6 2.9360 -10.5100 -0.7125 18 9 2.9510 -11.5556 -1.6418 19 9 2.1441 -10.8704 0.3831 20 6 4.3635 -10.2283 -0.2394 21 6 4.3476 -9.0847 0.7768 22 7 3.8413 -4.9286 -0.5706 23 7 3.2179 -3.8494 -0.8890 24 1 -0.4850 0.8401 -0.0004 25 1 0.6242 -2.5609 0.8844 26 1 0.6244 -2.5529 -0.8956 27 1 1.6411 -4.8218 1.7279 28 1 4.7571 -6.5433 1.5414 29 1 3.0680 -6.9292 1.9490 30 1 4.3871 -7.5470 -0.7318 31 1 1.7259 -8.3912 0.5021 32 1 1.9313 -7.2147 -0.8178 33 1 2.9755 -8.9727 -2.2212 34 1 1.3417 -9.4540 -1.7050 35 1 4.9804 -9.9474 -1.0930 36 1 4.7746 -11.1232 0.2278 37 1 5.3645 -8.8843 1.1142 38 1 3.7307 -9.3655 1.6304 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603243878.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:35:59 Heat of formation + Delta-G solvation = -50.207658 kcal Electronic energy + Delta-G solvation = -22356.423663 eV Core-core repulsion = 18676.921286 eV Total energy + Delta-G solvation = -3679.502377 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.135 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -49.98606 -47.98951 -44.00913 -39.33570 -35.95756 -35.00573 -32.85587 -32.21394 -31.71400 -29.34974 -27.23816 -25.44258 -24.26519 -23.42186 -22.49600 -21.57222 -20.73586 -18.52174 -18.41711 -18.07124 -17.67656 -17.31122 -17.16278 -16.52515 -15.62296 -15.47328 -15.29709 -15.07960 -14.56373 -14.54809 -14.33029 -14.28245 -13.92653 -13.69327 -13.51645 -13.40808 -13.06796 -12.86745 -12.67042 -12.59656 -12.45835 -12.17210 -12.10527 -11.89195 -11.65873 -11.57284 -11.32452 -11.13675 -10.72317 -10.56734 -9.80696 -8.17861 -6.26568 0.82804 1.40842 1.44418 1.52047 1.65096 1.81783 2.45299 2.77522 3.08608 3.14952 3.18309 3.36041 3.58782 3.74501 3.78934 3.92196 4.06740 4.12793 4.23774 4.29993 4.43384 4.49635 4.52996 4.63416 4.65672 4.81377 4.84115 4.91331 4.98441 4.99836 5.14063 5.30075 5.35838 5.48830 5.56761 5.77838 5.91948 6.23993 6.81926 7.40095 7.78008 8.92847 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.042221 B = 0.003037 C = 0.002972 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.013147 B = 9216.146042 C = 9418.314585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.008 3.992 3 Si 0.961 3.039 4 H -0.276 1.276 5 H -0.277 1.277 6 H -0.268 1.268 7 C -0.524 4.524 8 H 0.045 0.955 9 C 0.102 3.898 10 C -0.010 4.010 11 C -0.053 4.053 12 N -0.279 5.279 13 C 0.111 3.889 14 C -0.099 4.099 15 C -0.112 4.112 16 C -0.156 4.156 17 C 0.283 3.717 18 F -0.215 7.215 19 F -0.208 7.208 20 C -0.153 4.153 21 C -0.102 4.102 22 N -0.114 5.114 23 N -0.312 5.312 24 H 0.266 0.734 25 H 0.032 0.968 26 H 0.005 0.995 27 H 0.220 0.780 28 H 0.119 0.881 29 H 0.136 0.864 30 H 0.082 0.918 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.097 0.903 34 H 0.083 0.917 35 H 0.104 0.896 36 H 0.103 0.897 37 H 0.107 0.893 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.059 -24.065 5.112 25.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.568 5.568 2 C -0.190 4.190 3 Si 0.786 3.214 4 H -0.201 1.201 5 H -0.202 1.202 6 H -0.193 1.193 7 C -0.563 4.563 8 H 0.063 0.937 9 C 0.063 3.937 10 C -0.148 4.148 11 C -0.203 4.203 12 N -0.075 5.075 13 C -0.008 4.008 14 C -0.118 4.118 15 C -0.150 4.150 16 C -0.194 4.194 17 C 0.247 3.753 18 F -0.197 7.197 19 F -0.189 7.189 20 C -0.190 4.190 21 C -0.140 4.140 22 N -0.093 5.093 23 N -0.179 5.179 24 H 0.075 0.925 25 H 0.051 0.949 26 H 0.023 0.977 27 H 0.237 0.763 28 H 0.137 0.863 29 H 0.154 0.846 30 H 0.100 0.900 31 H 0.103 0.897 32 H 0.068 0.932 33 H 0.116 0.884 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges 9.015 -24.162 4.057 26.106 hybrid contribution -0.935 0.945 0.388 1.385 sum 8.079 -23.216 4.445 24.981 Atomic orbital electron populations 1.70037 1.07292 1.27954 1.51508 1.25800 0.95784 1.02699 0.94752 0.85563 0.78386 0.78584 0.78871 1.20119 1.20160 1.19254 1.21276 0.92804 0.91592 1.50596 0.93673 1.17360 0.91178 0.88513 0.96603 1.22603 0.98660 0.99037 0.94474 1.23697 0.97406 0.94214 1.05023 1.47541 1.20983 1.19763 1.19168 1.22604 1.04650 0.77913 0.95631 1.21525 0.96973 0.94579 0.98711 1.21510 0.97418 0.96883 0.99172 1.22468 1.03610 0.93158 1.00177 1.21401 0.93308 0.83878 0.76706 1.92985 1.97411 1.61910 1.67351 1.92974 1.77060 1.93048 1.55810 1.22524 0.91989 1.02000 1.02536 1.21479 1.04027 0.90824 0.97684 1.78008 1.21623 1.06236 1.03387 1.74987 1.08096 1.09294 1.25512 0.92517 0.94943 0.97667 0.76306 0.86269 0.84615 0.89984 0.89731 0.93232 0.88430 0.89872 0.87763 0.87860 0.87453 0.89398 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.80 13.29 21.45 0.28 -55.52 16 2 C 0.01 0.45 5.46 84.66 0.46 0.92 16 3 Si 0.96 45.54 29.54 68.60 2.03 47.56 16 4 H -0.28 -12.99 7.11 99.48 0.71 -12.28 16 5 H -0.28 -12.52 7.11 99.48 0.71 -11.81 16 6 H -0.27 -12.16 7.11 99.48 0.71 -11.46 16 7 C -0.52 -30.99 9.09 25.60 0.23 -30.76 16 8 H 0.04 2.72 7.74 -2.91 -0.02 2.70 16 9 C 0.10 5.51 5.55 29.10 0.16 5.67 16 10 C -0.01 -0.44 6.44 41.60 0.27 -0.17 16 11 C -0.05 -1.76 11.49 83.49 0.96 -0.80 16 12 N -0.28 -7.95 2.89 -347.73 -1.01 -8.95 16 13 C 0.11 1.66 5.85 86.38 0.50 2.17 16 14 C -0.10 -1.35 2.24 -10.79 -0.02 -1.37 16 15 C -0.11 -1.91 4.97 30.59 0.15 -1.76 16 16 C -0.16 -2.56 5.45 30.59 0.17 -2.40 16 17 C 0.28 4.44 2.10 30.59 0.06 4.51 16 18 F -0.22 -4.23 17.06 44.97 0.77 -3.46 16 19 F -0.21 -3.80 16.02 44.97 0.72 -3.08 16 20 C -0.15 -1.50 5.45 30.59 0.17 -1.34 16 21 C -0.10 -0.80 5.08 30.59 0.16 -0.64 16 22 N -0.11 -4.31 12.82 37.02 0.47 -3.83 16 23 N -0.31 -14.82 12.40 -48.60 -0.60 -15.42 16 24 H 0.27 15.01 8.31 -92.70 -0.77 14.24 16 25 H 0.03 1.72 8.12 -2.38 -0.02 1.70 16 26 H 0.01 0.31 8.14 -2.39 -0.02 0.29 16 27 H 0.22 5.29 8.06 -2.91 -0.02 5.27 16 28 H 0.12 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.14 1.20 8.07 -2.39 -0.02 1.18 16 30 H 0.08 1.41 8.00 -2.39 -0.02 1.39 16 31 H 0.08 1.28 7.80 -2.39 -0.02 1.26 16 32 H 0.05 1.16 7.75 -2.38 -0.02 1.15 16 33 H 0.10 1.55 8.14 -2.39 -0.02 1.53 16 34 H 0.08 1.43 8.14 -2.39 -0.02 1.41 16 35 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.10 0.79 8.14 -2.38 -0.02 0.78 16 37 H 0.11 0.43 8.14 -2.39 -0.02 0.41 16 38 H 0.09 0.59 7.80 -2.39 -0.02 0.57 16 Total: -1.00 -75.15 323.16 6.99 -68.16 By element: Atomic # 1 Polarization: -0.54 SS G_CDS: 1.05 Total: 0.52 kcal Atomic # 6 Polarization: -29.24 SS G_CDS: 3.27 Total: -25.97 kcal Atomic # 7 Polarization: -82.88 SS G_CDS: -0.85 Total: -83.73 kcal Atomic # 9 Polarization: -8.03 SS G_CDS: 1.49 Total: -6.54 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.56 kcal Total: -75.15 6.99 -68.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603243878.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.955 kcal (2) G-P(sol) polarization free energy of solvation -75.153 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -57.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.990 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.208 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds