Wall clock time and date at job start Tue Mar 31 2020 06:32:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99692 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99875 * 180.02562 * 13 11 10 15 15 C 1.54894 * 129.08854 * 299.93233 * 14 13 11 16 16 C 1.57167 * 77.91512 * 180.16611 * 15 14 13 17 17 C 1.50702 * 129.25096 * 179.19408 * 16 15 14 18 18 C 1.38238 * 120.00235 * 241.01660 * 17 16 15 19 19 C 1.38235 * 120.00178 * 179.78566 * 18 17 16 20 20 C 1.38236 * 119.99834 * 0.46426 * 19 18 17 21 21 C 1.38240 * 119.99798 * 359.76547 * 20 19 18 22 22 C 1.38232 * 120.00270 * 0.02562 * 21 20 19 23 23 C 1.54409 * 83.73124 * 42.47508 * 16 15 14 24 24 C 1.54890 * 83.77720 * 317.35622 * 16 15 14 25 25 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 27 27 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 28 28 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 29 29 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 30 30 H 0.96999 * 120.00043 * 359.97438 * 13 11 10 31 31 H 1.09000 * 114.97529 * 291.96276 * 15 14 13 32 32 H 1.08995 * 114.97672 * 67.13274 * 15 14 13 33 33 H 1.08001 * 119.99897 * 359.97438 * 18 17 16 34 34 H 1.07996 * 119.99888 * 180.24700 * 19 18 17 35 35 H 1.08002 * 120.00146 * 179.79324 * 20 19 18 36 36 H 1.08005 * 119.99490 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.99826 * 179.97438 * 22 21 20 38 38 H 1.09005 * 114.93239 * 205.05901 * 23 16 15 39 39 H 1.08998 * 114.98826 * 70.03662 * 23 16 15 40 40 H 1.09000 * 116.12048 * 290.12691 * 24 16 15 41 41 H 1.08997 * 113.83475 * 154.95758 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0026 13 7 6.2022 -3.8040 -0.0028 14 6 7.6672 -3.8041 -0.0035 15 6 8.6434 -3.2039 -1.0456 16 6 9.6292 -3.8191 0.0127 17 6 11.1360 -3.8419 0.0119 18 6 11.8091 -5.0493 -0.0003 19 6 13.1912 -5.0701 -0.0055 20 6 13.9005 -3.8837 0.0111 21 6 13.2274 -2.6763 0.0280 22 6 11.8452 -2.6554 0.0289 23 6 8.6392 -5.0039 -0.0042 24 6 8.6443 -3.2044 1.0380 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 -0.8911 27 1 3.8751 -0.6805 0.8889 28 1 3.6583 -3.1503 0.8892 29 1 3.6577 -3.1507 -0.8908 30 1 5.7172 -4.6441 -0.0021 31 1 8.6463 -3.7032 -2.0145 32 1 8.6356 -2.1159 -1.1104 33 1 11.2550 -5.9763 -0.0087 34 1 13.7170 -6.0134 -0.0190 35 1 14.9803 -3.9000 0.0104 36 1 13.7816 -1.7494 0.0405 37 1 11.3195 -1.7122 0.0425 38 1 8.6271 -5.6056 0.9046 39 1 8.6415 -5.5928 -0.9214 40 1 8.6366 -2.1164 1.1033 41 1 8.6482 -3.7042 2.0067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000603422629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:01 Heat of formation + Delta-G solvation = 74.321749 kcal Electronic energy + Delta-G solvation = -21160.488376 eV Core-core repulsion = 18008.322778 eV Total energy + Delta-G solvation = -3152.165598 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.14277 -39.18803 -38.64796 -33.52033 -33.48266 -31.48930 -31.17692 -31.10273 -26.39551 -26.01883 -25.78470 -24.29556 -22.62989 -22.11256 -20.49948 -19.63431 -18.46734 -17.42346 -17.15561 -16.16200 -15.89816 -15.16615 -15.00975 -14.85777 -14.46751 -14.20942 -14.06349 -13.66227 -13.51947 -13.32269 -12.76245 -12.63460 -12.56854 -11.76981 -11.66243 -11.44279 -11.29865 -11.28602 -11.12297 -10.97040 -10.67168 -10.34795 -10.17577 -10.05150 -9.78842 -9.25522 -9.19394 -9.17767 -8.96500 -8.80524 -8.51102 -6.03485 -4.02303 1.02927 1.13186 3.04149 3.13662 3.37715 3.42882 3.44318 3.55086 4.01002 4.16458 4.29618 4.43104 4.50417 4.50611 4.52771 4.73872 4.75410 4.87037 5.21192 5.32011 5.32047 5.40200 5.43728 5.46380 5.53492 5.70045 5.76913 5.82111 5.89942 5.94550 5.96165 6.06143 6.07609 6.23263 6.25536 6.37704 6.66534 6.70123 6.71455 7.35250 7.42287 7.73569 7.78983 8.49197 8.62889 8.99523 9.59490 11.09308 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.002826 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.732171 B = 9907.306895 C =10518.196293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.903 5.903 2 C 0.069 3.931 3 Si 0.878 3.122 4 H -0.277 1.277 5 H -0.288 1.288 6 H -0.261 1.261 7 C -0.525 4.525 8 H 0.073 0.927 9 C 0.002 3.998 10 C -0.120 4.120 11 C 0.514 3.486 12 O -0.530 6.530 13 N -0.691 5.691 14 C 0.105 3.895 15 C -0.111 4.111 16 C -0.089 4.089 17 C -0.015 4.015 18 C -0.109 4.109 19 C -0.121 4.121 20 C -0.124 4.124 21 C -0.119 4.119 22 C -0.106 4.106 23 C -0.106 4.106 24 C -0.109 4.109 25 H 0.263 0.737 26 H 0.019 0.981 27 H 0.024 0.976 28 H 0.087 0.913 29 H 0.087 0.913 30 H 0.405 0.595 31 H 0.073 0.927 32 H 0.083 0.917 33 H 0.122 0.878 34 H 0.122 0.878 35 H 0.121 0.879 36 H 0.123 0.877 37 H 0.124 0.876 38 H 0.078 0.922 39 H 0.078 0.922 40 H 0.084 0.916 41 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 26.329 -12.785 0.041 29.269 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.542 5.542 2 C -0.133 4.133 3 Si 0.705 3.295 4 H -0.202 1.202 5 H -0.214 1.214 6 H -0.185 1.185 7 C -0.563 4.563 8 H 0.091 0.909 9 C -0.036 4.036 10 C -0.160 4.160 11 C 0.303 3.697 12 O -0.405 6.405 13 N -0.342 5.342 14 C 0.016 3.984 15 C -0.150 4.150 16 C -0.090 4.090 17 C -0.016 4.016 18 C -0.127 4.127 19 C -0.139 4.139 20 C -0.142 4.142 21 C -0.137 4.137 22 C -0.124 4.124 23 C -0.144 4.144 24 C -0.148 4.148 25 H 0.073 0.927 26 H 0.037 0.963 27 H 0.042 0.958 28 H 0.106 0.894 29 H 0.105 0.895 30 H 0.241 0.759 31 H 0.091 0.909 32 H 0.102 0.898 33 H 0.140 0.860 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.141 0.859 37 H 0.142 0.858 38 H 0.096 0.904 39 H 0.097 0.903 40 H 0.102 0.898 41 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 26.535 -11.881 0.043 29.073 hybrid contribution 0.044 0.430 -0.036 0.434 sum 26.578 -11.451 0.007 28.940 Atomic orbital electron populations 1.69914 1.06291 1.26975 1.51029 1.24975 0.94717 0.99242 0.94327 0.86792 0.80615 0.83383 0.78744 1.20240 1.21441 1.18532 1.21108 0.89245 0.94582 1.51384 0.90905 1.19372 0.96433 0.90093 0.97696 1.21679 0.87413 1.03437 1.03491 1.21641 0.91431 0.82542 0.74103 1.90645 1.70614 1.31283 1.47950 1.44974 1.02671 1.09599 1.76984 1.22564 0.80887 0.97368 0.97551 1.24900 0.92309 1.01401 0.96361 1.22299 0.89357 0.98046 0.99334 1.18235 0.90175 0.93368 0.99774 1.20975 0.94256 0.97368 1.00138 1.21120 0.93992 0.98261 1.00485 1.21172 0.99895 0.92637 1.00505 1.21151 0.94188 0.98149 1.00178 1.21007 0.94042 0.97956 0.99404 1.24149 0.92815 0.95211 1.02195 1.24422 0.92335 1.01452 0.96564 0.92710 0.96255 0.95787 0.89431 0.89481 0.75921 0.90886 0.89803 0.85963 0.85980 0.86128 0.85901 0.85805 0.90393 0.90328 0.89758 0.91025 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -28.03 13.96 55.43 0.77 -27.26 16 2 C 0.07 2.04 5.47 -17.82 -0.10 1.94 16 3 Si 0.88 22.64 27.47 -169.99 -4.67 17.97 16 4 H -0.28 -7.03 7.11 56.52 0.40 -6.63 16 5 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 6 H -0.26 -6.70 6.54 56.52 0.37 -6.33 16 7 C -0.53 -15.02 9.66 -34.44 -0.33 -15.35 16 8 H 0.07 2.17 7.99 -52.49 -0.42 1.75 16 9 C 0.00 0.05 3.33 -27.88 -0.09 -0.04 16 10 C -0.12 -2.30 5.64 -27.88 -0.16 -2.46 16 11 C 0.51 9.32 7.83 -10.98 -0.09 9.23 16 12 O -0.53 -11.59 15.86 5.56 0.09 -11.51 16 13 N -0.69 -9.44 5.71 -63.98 -0.37 -9.81 16 14 C 0.11 1.34 3.79 -148.42 -0.56 0.78 16 15 C -0.11 -1.39 7.88 -24.71 -0.19 -1.59 16 16 C -0.09 -0.96 3.23 -171.00 -0.55 -1.51 16 17 C -0.02 -0.15 5.88 -104.62 -0.62 -0.77 16 18 C -0.11 -0.95 9.66 -39.58 -0.38 -1.34 16 19 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 20 C -0.12 -0.95 10.05 -39.58 -0.40 -1.35 16 21 C -0.12 -0.99 10.05 -39.58 -0.40 -1.39 16 22 C -0.11 -1.04 9.74 -39.58 -0.39 -1.43 16 23 C -0.11 -1.01 7.34 -26.72 -0.20 -1.21 16 24 C -0.11 -1.37 7.77 -25.98 -0.20 -1.57 16 25 H 0.26 7.66 8.31 -40.82 -0.34 7.32 16 26 H 0.02 0.49 7.53 -51.93 -0.39 0.10 16 27 H 0.02 0.62 7.16 -51.93 -0.37 0.25 16 28 H 0.09 1.54 8.14 -51.93 -0.42 1.12 16 29 H 0.09 1.53 8.14 -51.93 -0.42 1.11 16 30 H 0.41 4.21 8.83 -40.82 -0.36 3.85 16 31 H 0.07 0.84 7.91 -51.93 -0.41 0.43 16 32 H 0.08 1.21 7.97 -51.93 -0.41 0.80 16 33 H 0.12 0.88 7.75 -52.49 -0.41 0.48 16 34 H 0.12 0.67 8.06 -52.49 -0.42 0.25 16 35 H 0.12 0.66 8.06 -52.49 -0.42 0.23 16 36 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 37 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 38 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 39 H 0.08 0.66 7.91 -51.93 -0.41 0.25 16 40 H 0.08 1.22 7.97 -51.93 -0.41 0.81 16 41 H 0.07 0.83 7.93 -51.93 -0.41 0.42 16 LS Contribution 344.81 15.07 5.20 5.20 Total: -1.00 -33.93 344.81 -10.15 -44.08 By element: Atomic # 1 Polarization: 6.83 SS G_CDS: -6.13 Total: 0.70 kcal Atomic # 6 Polarization: -14.33 SS G_CDS: -5.05 Total: -19.38 kcal Atomic # 7 Polarization: -37.47 SS G_CDS: 0.41 Total: -37.07 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.51 kcal Atomic # 14 Polarization: 22.64 SS G_CDS: -4.67 Total: 17.97 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -33.93 -10.15 -44.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603422629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.400 kcal (2) G-P(sol) polarization free energy of solvation -33.925 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 84.475 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.153 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.079 kcal (6) G-S(sol) free energy of system = (1) + (5) 74.322 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds