Wall clock time and date at job start Tue Mar 31 2020 06:32:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86798 * 120.00042 * 2 1 4 4 H 1.48500 * 109.47353 * 269.99835 * 3 2 1 5 5 H 1.48494 * 109.47031 * 30.00382 * 3 2 1 6 6 H 1.48504 * 109.46680 * 150.00084 * 3 2 1 7 7 C 1.37879 * 119.99350 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00381 * 0.27482 * 7 2 1 9 9 C 1.50706 * 119.99394 * 179.97438 * 7 2 1 10 10 C 1.52999 * 109.46573 * 179.97438 * 9 7 2 11 11 C 1.50706 * 109.46953 * 179.97438 * 10 9 7 12 12 O 1.21279 * 119.99692 * 0.02562 * 11 10 9 13 13 N 1.34777 * 120.00146 * 180.02562 * 11 10 9 14 14 C 1.46496 * 119.99875 * 180.02562 * 13 11 10 15 15 C 1.54894 * 129.08854 * 299.93233 * 14 13 11 16 16 C 1.57167 * 77.91512 * 180.16611 * 15 14 13 17 17 C 1.50702 * 129.25096 * 179.19408 * 16 15 14 18 18 C 1.38238 * 120.00235 * 241.01660 * 17 16 15 19 19 C 1.38235 * 120.00178 * 179.78566 * 18 17 16 20 20 C 1.38236 * 119.99834 * 0.46426 * 19 18 17 21 21 C 1.38240 * 119.99798 * 359.76547 * 20 19 18 22 22 C 1.38232 * 120.00270 * 0.02562 * 21 20 19 23 23 C 1.54409 * 83.73124 * 42.47508 * 16 15 14 24 24 C 1.54890 * 83.77720 * 317.35622 * 16 15 14 25 25 H 0.97005 * 119.99656 * 359.97438 * 1 2 3 26 26 H 1.09000 * 109.47161 * 299.99886 * 9 7 2 27 27 H 1.09001 * 109.46740 * 60.00029 * 9 7 2 28 28 H 1.09000 * 109.47486 * 299.99934 * 10 9 7 29 29 H 1.09001 * 109.47362 * 60.00657 * 10 9 7 30 30 H 0.96999 * 120.00043 * 359.97438 * 13 11 10 31 31 H 1.09000 * 114.97529 * 291.96276 * 15 14 13 32 32 H 1.08995 * 114.97672 * 67.13274 * 15 14 13 33 33 H 1.08001 * 119.99897 * 359.97438 * 18 17 16 34 34 H 1.07996 * 119.99888 * 180.24700 * 19 18 17 35 35 H 1.08002 * 120.00146 * 179.79324 * 20 19 18 36 36 H 1.08005 * 119.99490 * 180.02562 * 21 20 19 37 37 H 1.07996 * 119.99826 * 179.97438 * 22 21 20 38 38 H 1.09005 * 114.93239 * 205.05901 * 23 16 15 39 39 H 1.08998 * 114.98826 * 70.03662 * 23 16 15 40 40 H 1.09000 * 116.12048 * 290.12691 * 24 16 15 41 41 H 1.08997 * 113.83475 * 154.95758 * 24 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4967 2.0464 -1.4001 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0044 -1.1941 -0.0005 8 1 1.4644 -2.1294 -0.0054 9 6 3.5115 -1.1942 -0.0011 10 6 4.0213 -2.6367 -0.0010 11 6 5.5284 -2.6368 -0.0022 12 8 6.1348 -1.5865 -0.0026 13 7 6.2022 -3.8040 -0.0028 14 6 7.6672 -3.8041 -0.0035 15 6 8.6434 -3.2039 -1.0456 16 6 9.6292 -3.8191 0.0127 17 6 11.1360 -3.8419 0.0119 18 6 11.8091 -5.0493 -0.0003 19 6 13.1912 -5.0701 -0.0055 20 6 13.9005 -3.8837 0.0111 21 6 13.2274 -2.6763 0.0280 22 6 11.8452 -2.6554 0.0289 23 6 8.6392 -5.0039 -0.0042 24 6 8.6443 -3.2044 1.0380 25 1 -0.4850 0.8401 0.0004 26 1 3.8745 -0.6801 -0.8911 27 1 3.8751 -0.6805 0.8889 28 1 3.6583 -3.1503 0.8892 29 1 3.6577 -3.1507 -0.8908 30 1 5.7172 -4.6441 -0.0021 31 1 8.6463 -3.7032 -2.0145 32 1 8.6356 -2.1159 -1.1104 33 1 11.2550 -5.9763 -0.0087 34 1 13.7170 -6.0134 -0.0190 35 1 14.9803 -3.9000 0.0104 36 1 13.7816 -1.7494 0.0405 37 1 11.3195 -1.7122 0.0425 38 1 8.6271 -5.6056 0.9046 39 1 8.6415 -5.5928 -0.9214 40 1 8.6366 -2.1164 1.1033 41 1 8.6482 -3.7042 2.0067 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000603422629.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:32:00 Heat of formation + Delta-G solvation = 53.907610 kcal Electronic energy + Delta-G solvation = -21161.373599 eV Core-core repulsion = 18008.322778 eV Total energy + Delta-G solvation = -3153.050821 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.07300 -40.33907 -39.59119 -35.56204 -34.81932 -33.24892 -32.04411 -31.79134 -28.26190 -26.86955 -26.77029 -25.23710 -23.63674 -23.24538 -21.80059 -21.00970 -19.38976 -19.22744 -18.18994 -17.55985 -16.93341 -16.52284 -16.25226 -15.83505 -15.62967 -15.36704 -15.13170 -14.97822 -14.64741 -14.53132 -14.25305 -13.92466 -13.48364 -13.42740 -12.99552 -12.76127 -12.45399 -12.20605 -12.13044 -12.00406 -11.96271 -11.85624 -11.78423 -11.58597 -11.41688 -11.27595 -10.79474 -10.73735 -10.06851 -9.81766 -9.57382 -8.32890 -6.35552 0.37060 0.50758 1.31453 1.33487 1.48456 1.61356 1.97387 2.33416 2.75630 3.02789 3.18759 3.28467 3.40092 3.50050 3.57446 3.63356 4.06057 4.14284 4.18557 4.31533 4.38733 4.47944 4.50885 4.61913 4.63454 4.71617 4.72929 4.84124 4.91731 4.94030 4.98645 5.02155 5.13762 5.17286 5.32671 5.42759 5.55334 5.59750 5.63431 5.64154 5.70720 6.10880 6.22155 6.56479 6.70925 7.28501 7.29895 8.82710 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.036895 B = 0.002826 C = 0.002661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 758.732171 B = 9907.306895 C =10518.196293 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.942 5.942 2 C 0.014 3.986 3 Si 0.937 3.063 4 H -0.269 1.269 5 H -0.278 1.278 6 H -0.263 1.263 7 C -0.528 4.528 8 H 0.052 0.948 9 C 0.005 3.995 10 C -0.114 4.114 11 C 0.517 3.483 12 O -0.576 6.576 13 N -0.670 5.670 14 C 0.083 3.917 15 C -0.122 4.122 16 C -0.069 4.069 17 C -0.036 4.036 18 C -0.112 4.112 19 C -0.122 4.122 20 C -0.125 4.125 21 C -0.127 4.127 22 C -0.127 4.127 23 C -0.078 4.078 24 C -0.120 4.120 25 H 0.267 0.733 26 H 0.007 0.993 27 H 0.009 0.991 28 H 0.106 0.894 29 H 0.106 0.894 30 H 0.424 0.576 31 H 0.084 0.916 32 H 0.051 0.949 33 H 0.141 0.859 34 H 0.149 0.851 35 H 0.145 0.855 36 H 0.137 0.863 37 H 0.111 0.889 38 H 0.099 0.901 39 H 0.100 0.900 40 H 0.051 0.949 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 28.782 -15.043 -0.008 32.476 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.184 4.184 3 Si 0.762 3.238 4 H -0.194 1.194 5 H -0.203 1.203 6 H -0.188 1.188 7 C -0.566 4.566 8 H 0.071 0.929 9 C -0.033 4.033 10 C -0.154 4.154 11 C 0.306 3.694 12 O -0.454 6.454 13 N -0.321 5.321 14 C -0.006 4.006 15 C -0.161 4.161 16 C -0.070 4.070 17 C -0.036 4.036 18 C -0.129 4.129 19 C -0.140 4.140 20 C -0.142 4.142 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.116 4.116 24 C -0.159 4.159 25 H 0.076 0.924 26 H 0.026 0.974 27 H 0.027 0.973 28 H 0.124 0.876 29 H 0.124 0.876 30 H 0.263 0.737 31 H 0.103 0.897 32 H 0.069 0.931 33 H 0.159 0.841 34 H 0.167 0.833 35 H 0.163 0.837 36 H 0.155 0.845 37 H 0.129 0.871 38 H 0.117 0.883 39 H 0.118 0.882 40 H 0.070 0.930 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 28.994 -14.197 -0.007 32.283 hybrid contribution -0.674 1.087 -0.018 1.279 sum 28.320 -13.110 -0.026 31.207 Atomic orbital electron populations 1.70021 1.07713 1.28079 1.52488 1.25791 0.95498 1.02784 0.94328 0.85844 0.79191 0.79654 0.79106 1.19413 1.20293 1.18764 1.21428 0.91166 0.93782 1.50266 0.92939 1.19219 0.93996 0.93745 0.96301 1.21497 0.88510 1.00000 1.05349 1.21330 0.90984 0.83130 0.73953 1.90641 1.71226 1.33154 1.50401 1.44630 1.03521 1.09025 1.74962 1.22884 0.80063 1.00155 0.97523 1.24945 0.93817 0.99745 0.97574 1.22190 0.89811 0.98281 0.96692 1.18312 0.89618 0.94187 1.01512 1.21214 0.94959 0.97280 0.99481 1.21489 0.93774 0.99425 0.99299 1.21532 1.01267 0.92244 0.99198 1.21383 0.93663 0.99475 1.00005 1.21094 0.95021 0.97742 1.00643 1.24037 0.89388 0.93883 1.04254 1.24463 0.93841 0.99796 0.97751 0.92363 0.97415 0.97278 0.87620 0.87618 0.73699 0.89733 0.93070 0.84126 0.83335 0.83715 0.84548 0.87062 0.88266 0.88185 0.93015 0.89919 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -59.25 13.96 21.45 0.30 -58.95 16 2 C 0.01 0.82 5.47 84.66 0.46 1.29 16 3 Si 0.94 47.30 27.47 68.60 1.88 49.19 16 4 H -0.27 -13.15 7.11 99.48 0.71 -12.44 16 5 H -0.28 -13.42 7.11 99.48 0.71 -12.71 16 6 H -0.26 -13.28 6.54 99.48 0.65 -12.63 16 7 C -0.53 -30.60 9.66 25.60 0.25 -30.35 16 8 H 0.05 3.18 7.99 -2.91 -0.02 3.15 16 9 C 0.01 0.27 3.33 29.85 0.10 0.37 16 10 C -0.11 -4.28 5.64 29.85 0.17 -4.11 16 11 C 0.52 18.59 7.83 87.66 0.69 19.27 16 12 O -0.58 -25.83 15.86 -3.03 -0.05 -25.88 16 13 N -0.67 -17.32 5.71 -474.73 -2.71 -20.03 16 14 C 0.08 2.00 3.79 -7.15 -0.03 1.97 16 15 C -0.12 -3.07 7.88 31.90 0.25 -2.82 16 16 C -0.07 -1.40 3.23 -62.87 -0.20 -1.60 16 17 C -0.04 -0.69 5.88 -19.86 -0.12 -0.80 16 18 C -0.11 -1.62 9.66 22.27 0.22 -1.41 16 19 C -0.12 -1.48 10.05 22.27 0.22 -1.25 16 20 C -0.12 -1.57 10.05 22.27 0.22 -1.35 16 21 C -0.13 -1.99 10.05 22.27 0.22 -1.76 16 22 C -0.13 -2.50 9.74 22.27 0.22 -2.28 16 23 C -0.08 -1.24 7.34 30.60 0.22 -1.02 16 24 C -0.12 -3.02 7.77 31.08 0.24 -2.77 16 25 H 0.27 15.71 8.31 -92.70 -0.77 14.94 16 26 H 0.01 0.39 7.53 -2.39 -0.02 0.37 16 27 H 0.01 0.47 7.16 -2.39 -0.02 0.45 16 28 H 0.11 3.58 8.14 -2.39 -0.02 3.56 16 29 H 0.11 3.57 8.14 -2.39 -0.02 3.55 16 30 H 0.42 7.68 8.83 -92.71 -0.82 6.86 16 31 H 0.08 1.88 7.91 -2.39 -0.02 1.86 16 32 H 0.05 1.60 7.97 -2.39 -0.02 1.58 16 33 H 0.14 1.46 7.75 -2.91 -0.02 1.44 16 34 H 0.15 0.98 8.06 -2.91 -0.02 0.96 16 35 H 0.15 1.08 8.06 -2.91 -0.02 1.06 16 36 H 0.14 1.63 8.06 -2.91 -0.02 1.60 16 37 H 0.11 2.34 8.06 -2.91 -0.02 2.31 16 38 H 0.10 1.24 7.94 -2.38 -0.02 1.22 16 39 H 0.10 1.25 7.91 -2.39 -0.02 1.23 16 40 H 0.05 1.62 7.97 -2.39 -0.02 1.60 16 41 H 0.08 1.85 7.93 -2.39 -0.02 1.83 16 Total: -1.00 -75.23 344.81 2.71 -72.52 By element: Atomic # 1 Polarization: 11.64 SS G_CDS: 0.15 Total: 11.79 kcal Atomic # 6 Polarization: -31.77 SS G_CDS: 3.14 Total: -28.63 kcal Atomic # 7 Polarization: -76.57 SS G_CDS: -2.41 Total: -78.98 kcal Atomic # 8 Polarization: -25.83 SS G_CDS: -0.05 Total: -25.88 kcal Atomic # 14 Polarization: 47.30 SS G_CDS: 1.88 Total: 49.19 kcal Total: -75.23 2.71 -72.52 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000603422629.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.427 kcal (2) G-P(sol) polarization free energy of solvation -75.229 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.709 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.520 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.908 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds