Wall clock time and date at job start Tue Mar 31 2020 06:24:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47660 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47138 * 300.00195 * 3 2 1 6 6 H 1.48502 * 109.46866 * 59.99882 * 3 2 1 7 7 C 1.38957 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00067 * 159.57600 * 7 2 1 9 9 N 1.37089 * 119.99796 * 339.57486 * 7 2 1 10 10 C 1.34784 * 120.00334 * 321.80723 * 9 7 2 11 11 O 1.21292 * 119.99713 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00141 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47006 * 186.34429 * 12 10 9 14 14 H 1.08994 * 110.26962 * 302.23632 * 13 12 10 15 15 C 1.54352 * 110.30324 * 64.31085 * 13 12 10 16 16 C 1.54350 * 102.38851 * 145.27039 * 15 13 12 17 17 C 1.51363 * 105.17464 * 333.65546 * 16 15 13 18 18 C 1.38499 * 130.39264 * 197.17140 * 17 16 15 19 19 C 1.38095 * 120.21470 * 180.02562 * 18 17 16 20 20 C 1.38251 * 119.93847 * 0.24897 * 19 18 17 21 21 C 1.38109 * 119.93062 * 359.44707 * 20 19 18 22 22 C 1.38222 * 109.75882 * 17.18419 * 17 16 15 23 23 C 1.46497 * 120.00051 * 141.80772 * 9 7 2 24 24 C 1.52997 * 117.49895 * 2.53845 * 23 9 7 25 25 C 1.52994 * 117.49857 * 293.87977 * 23 9 7 26 26 H 0.96998 * 119.99951 * 5.03895 * 1 2 3 27 27 H 1.08996 * 109.47809 * 66.33984 * 12 10 9 28 28 H 1.08998 * 109.47037 * 306.34184 * 12 10 9 29 29 H 1.09000 * 110.81985 * 27.04740 * 15 13 12 30 30 H 1.08997 * 110.98893 * 263.57359 * 15 13 12 31 31 H 1.09004 * 110.29872 * 214.72586 * 16 15 13 32 32 H 1.09002 * 110.38413 * 92.62736 * 16 15 13 33 33 H 1.08000 * 119.88911 * 0.02562 * 18 17 16 34 34 H 1.08003 * 120.03444 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.03697 * 179.70594 * 20 19 18 36 36 H 1.07998 * 119.88725 * 180.27682 * 21 20 19 37 37 H 1.09005 * 115.55081 * 148.20701 * 23 9 7 38 38 H 1.09000 * 117.50184 * 0.02562 * 24 23 9 39 39 H 1.09004 * 117.49988 * 145.01964 * 24 23 9 40 40 H 1.09009 * 117.50347 * 214.97857 * 25 23 9 41 41 H 1.09002 * 117.49962 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0379 -1.2326 -0.3269 9 7 1.3880 -2.3535 0.4133 10 6 0.5314 -2.3202 1.4534 11 8 0.3102 -1.2728 2.0236 12 6 -0.1505 -3.5846 1.9086 13 6 -1.1794 -3.2481 2.9899 14 1 -0.6963 -2.7444 3.8271 15 6 -2.2998 -2.3616 2.4058 16 6 -3.5437 -2.8471 3.1802 17 6 -3.2340 -4.2760 3.5716 18 6 -4.0743 -5.2941 3.9907 19 6 -3.5593 -6.5376 4.2995 20 6 -2.1998 -6.7666 4.1953 21 6 -1.3610 -5.7545 3.7716 22 6 -1.8755 -4.5065 3.4623 23 6 1.6556 -3.6187 -0.2750 24 6 2.6820 -3.6025 -1.4095 25 6 1.1915 -3.7447 -1.7274 26 1 -0.4850 0.8368 -0.0738 27 1 0.5916 -4.2719 2.3145 28 1 -0.6532 -4.0514 1.0616 29 1 -2.4158 -2.5382 1.3365 30 1 -2.1069 -1.3074 2.6042 31 1 -4.4250 -2.8129 2.5397 32 1 -3.6994 -2.2365 4.0696 33 1 -5.1359 -5.1147 4.0762 34 1 -4.2172 -7.3292 4.6264 35 1 -1.7947 -7.7371 4.4410 36 1 -0.2997 -5.9355 3.6861 37 1 1.6080 -4.5120 0.3479 38 1 3.1586 -2.6505 -1.6435 39 1 3.3095 -4.4852 -1.5332 40 1 0.8389 -4.7210 -2.0603 41 1 0.6867 -2.8863 -2.1707 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000609651593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:35 Heat of formation + Delta-G solvation = 26.649885 kcal Electronic energy + Delta-G solvation = -22664.324352 eV Core-core repulsion = 19510.091547 eV Total energy + Delta-G solvation = -3154.232805 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.02978 -38.42247 -36.25237 -35.21392 -32.74375 -31.81475 -30.86540 -29.38432 -28.41787 -25.71051 -23.88899 -22.33473 -21.68914 -21.14005 -20.66957 -20.11446 -18.70347 -16.58957 -16.04518 -15.85618 -15.11365 -14.97573 -14.72487 -14.50586 -13.93544 -13.78606 -13.63236 -13.02291 -12.88450 -12.47809 -12.37993 -12.28221 -11.70566 -11.38217 -11.15998 -11.08369 -10.87008 -10.86498 -10.66755 -10.55255 -10.31848 -10.24465 -10.18645 -10.05714 -9.88011 -9.67958 -8.73246 -8.63824 -8.29270 -7.87982 -6.90430 -6.04831 -3.74948 1.54141 1.56191 3.32402 3.42155 3.43822 3.93396 4.20457 4.37063 4.70891 4.75983 4.89992 5.01271 5.11685 5.17560 5.34045 5.45920 5.49151 5.56959 5.64013 5.68760 5.80360 5.83078 5.90691 5.96605 5.99148 6.06945 6.17264 6.29395 6.30652 6.35278 6.46964 6.50844 6.55263 6.63619 6.64545 6.86182 6.90709 6.96603 6.98592 7.00349 7.18379 7.67202 8.30944 9.12269 9.25693 9.76427 10.41356 11.03447 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.005097 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.942500 B = 5492.368135 C = 6377.512103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.821 5.821 2 C 0.071 3.929 3 Si 0.908 3.092 4 H -0.273 1.273 5 H -0.288 1.288 6 H -0.282 1.282 7 C -0.350 4.350 8 H 0.079 0.921 9 N -0.430 5.430 10 C 0.474 3.526 11 O -0.524 6.524 12 C -0.122 4.122 13 C -0.029 4.029 14 H 0.089 0.911 15 C -0.098 4.098 16 C -0.087 4.087 17 C -0.094 4.094 18 C -0.113 4.113 19 C -0.129 4.129 20 C -0.126 4.126 21 C -0.108 4.108 22 C -0.080 4.080 23 C 0.073 3.927 24 C -0.182 4.182 25 C -0.198 4.198 26 H 0.261 0.739 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.088 0.912 31 H 0.069 0.931 32 H 0.075 0.925 33 H 0.115 0.885 34 H 0.118 0.882 35 H 0.119 0.881 36 H 0.118 0.882 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.894 -11.469 4.312 13.195 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.454 5.454 2 C -0.140 4.140 3 Si 0.736 3.264 4 H -0.197 1.197 5 H -0.214 1.214 6 H -0.208 1.208 7 C -0.477 4.477 8 H 0.097 0.903 9 N -0.151 5.151 10 C 0.262 3.738 11 O -0.402 6.402 12 C -0.162 4.162 13 C -0.048 4.048 14 H 0.107 0.893 15 C -0.135 4.135 16 C -0.124 4.124 17 C -0.094 4.094 18 C -0.131 4.131 19 C -0.147 4.147 20 C -0.144 4.144 21 C -0.126 4.126 22 C -0.080 4.080 23 C -0.034 4.034 24 C -0.220 4.220 25 C -0.237 4.237 26 H 0.071 0.929 27 H 0.087 0.913 28 H 0.091 0.909 29 H 0.088 0.912 30 H 0.107 0.893 31 H 0.087 0.913 32 H 0.093 0.907 33 H 0.133 0.867 34 H 0.136 0.864 35 H 0.137 0.863 36 H 0.136 0.864 37 H 0.120 0.880 38 H 0.122 0.878 39 H 0.100 0.900 40 H 0.098 0.902 41 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -5.180 -10.779 4.697 12.848 hybrid contribution 0.349 0.555 -0.223 0.693 sum -4.831 -10.224 4.474 12.161 Atomic orbital electron populations 1.69880 1.06427 1.26956 1.42181 1.25102 0.94737 0.99031 0.95088 0.86219 0.79837 0.83031 0.77358 1.19749 1.21436 1.20781 1.18973 0.95571 0.84382 1.48732 0.90311 1.42866 1.41508 1.04782 1.25962 1.19644 0.83326 0.89228 0.81607 1.90514 1.62444 1.31830 1.55368 1.21635 0.97818 0.98383 0.98412 1.20410 0.95408 0.91091 0.97849 0.89280 1.22226 0.91238 1.00738 0.99289 1.21183 0.99716 0.91339 1.00132 1.20743 0.94131 0.95887 0.98646 1.20594 0.99147 0.92712 1.00631 1.20938 0.95386 0.96744 1.01663 1.20975 0.93680 0.98793 1.00941 1.20663 0.99805 0.92253 0.99896 1.20857 0.94772 0.94836 0.97544 1.21717 1.03290 0.90346 0.88013 1.23081 0.92180 1.02734 1.03976 1.23238 0.97219 1.01769 1.01520 0.92920 0.91277 0.90897 0.91184 0.89290 0.91252 0.90653 0.86703 0.86433 0.86332 0.86367 0.87959 0.87752 0.89994 0.90212 0.88443 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -23.76 11.31 55.50 0.63 -23.13 16 2 C 0.07 1.98 4.32 -17.47 -0.08 1.91 16 3 Si 0.91 21.87 29.60 -169.99 -5.03 16.84 16 4 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 6 H -0.28 -7.01 7.11 56.52 0.40 -6.60 16 7 C -0.35 -9.46 8.36 -14.93 -0.12 -9.59 16 8 H 0.08 2.08 6.72 -52.49 -0.35 1.73 16 9 N -0.43 -10.63 2.88 -107.73 -0.31 -10.94 16 10 C 0.47 11.69 6.68 -10.99 -0.07 11.62 16 11 O -0.52 -14.76 12.09 5.55 0.07 -14.69 16 12 C -0.12 -2.35 3.54 -27.89 -0.10 -2.45 16 13 C -0.03 -0.53 2.51 -90.73 -0.23 -0.76 16 14 H 0.09 1.73 7.98 -51.93 -0.41 1.32 16 15 C -0.10 -1.81 5.61 -25.32 -0.14 -1.95 16 16 C -0.09 -1.30 6.77 -26.85 -0.18 -1.49 16 17 C -0.09 -1.42 6.14 -104.21 -0.64 -2.06 16 18 C -0.11 -1.47 10.04 -39.54 -0.40 -1.87 16 19 C -0.13 -1.54 10.05 -39.63 -0.40 -1.94 16 20 C -0.13 -1.54 10.05 -39.62 -0.40 -1.94 16 21 C -0.11 -1.51 9.74 -39.54 -0.39 -1.90 16 22 C -0.08 -1.27 5.61 -104.21 -0.58 -1.86 16 23 C 0.07 1.45 5.74 -67.94 -0.39 1.06 16 24 C -0.18 -3.27 9.80 -26.70 -0.26 -3.53 16 25 C -0.20 -3.67 10.37 -26.70 -0.28 -3.95 16 26 H 0.26 7.28 8.32 -40.82 -0.34 6.94 16 27 H 0.07 1.18 7.57 -51.93 -0.39 0.79 16 28 H 0.07 1.38 7.88 -51.93 -0.41 0.97 16 29 H 0.07 1.40 7.89 -51.93 -0.41 0.99 16 30 H 0.09 1.87 7.59 -51.93 -0.39 1.47 16 31 H 0.07 0.95 8.14 -51.93 -0.42 0.52 16 32 H 0.08 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.11 1.25 8.06 -52.49 -0.42 0.83 16 34 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 35 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 36 H 0.12 1.49 7.82 -52.49 -0.41 1.08 16 37 H 0.10 1.77 7.16 -51.93 -0.37 1.39 16 38 H 0.10 2.06 6.45 -51.93 -0.33 1.73 16 39 H 0.08 1.21 8.14 -51.93 -0.42 0.79 16 40 H 0.08 1.24 8.14 -51.92 -0.42 0.82 16 41 H 0.10 2.09 8.14 -51.93 -0.42 1.66 16 LS Contribution 332.76 15.07 5.01 5.01 Total: -1.00 -31.18 332.76 -10.29 -41.47 By element: Atomic # 1 Polarization: 12.12 SS G_CDS: -6.01 Total: 6.11 kcal Atomic # 6 Polarization: -16.02 SS G_CDS: -4.65 Total: -20.67 kcal Atomic # 7 Polarization: -34.39 SS G_CDS: 0.32 Total: -34.07 kcal Atomic # 8 Polarization: -14.76 SS G_CDS: 0.07 Total: -14.69 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.03 Total: 16.84 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -31.18 -10.29 -41.47 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609651593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.121 kcal (2) G-P(sol) polarization free energy of solvation -31.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.471 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.650 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds