Wall clock time and date at job start Tue Mar 31 2020 06:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31403 * 1 3 3 Si 1.86799 * 120.00264 * 2 1 4 4 H 1.48499 * 109.47660 * 180.02562 * 3 2 1 5 5 H 1.48502 * 109.47138 * 300.00195 * 3 2 1 6 6 H 1.48502 * 109.46866 * 59.99882 * 3 2 1 7 7 C 1.38957 * 120.00088 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00067 * 159.57600 * 7 2 1 9 9 N 1.37089 * 119.99796 * 339.57486 * 7 2 1 10 10 C 1.34784 * 120.00334 * 321.80723 * 9 7 2 11 11 O 1.21292 * 119.99713 * 359.97438 * 10 9 7 12 12 C 1.50693 * 120.00141 * 180.02562 * 10 9 7 13 13 C 1.53000 * 109.47006 * 186.34429 * 12 10 9 14 14 H 1.08994 * 110.26962 * 302.23632 * 13 12 10 15 15 C 1.54352 * 110.30324 * 64.31085 * 13 12 10 16 16 C 1.54350 * 102.38851 * 145.27039 * 15 13 12 17 17 C 1.51363 * 105.17464 * 333.65546 * 16 15 13 18 18 C 1.38499 * 130.39264 * 197.17140 * 17 16 15 19 19 C 1.38095 * 120.21470 * 180.02562 * 18 17 16 20 20 C 1.38251 * 119.93847 * 0.24897 * 19 18 17 21 21 C 1.38109 * 119.93062 * 359.44707 * 20 19 18 22 22 C 1.38222 * 109.75882 * 17.18419 * 17 16 15 23 23 C 1.46497 * 120.00051 * 141.80772 * 9 7 2 24 24 C 1.52997 * 117.49895 * 2.53845 * 23 9 7 25 25 C 1.52994 * 117.49857 * 293.87977 * 23 9 7 26 26 H 0.96998 * 119.99951 * 5.03895 * 1 2 3 27 27 H 1.08996 * 109.47809 * 66.33984 * 12 10 9 28 28 H 1.08998 * 109.47037 * 306.34184 * 12 10 9 29 29 H 1.09000 * 110.81985 * 27.04740 * 15 13 12 30 30 H 1.08997 * 110.98893 * 263.57359 * 15 13 12 31 31 H 1.09004 * 110.29872 * 214.72586 * 16 15 13 32 32 H 1.09002 * 110.38413 * 92.62736 * 16 15 13 33 33 H 1.08000 * 119.88911 * 0.02562 * 18 17 16 34 34 H 1.08003 * 120.03444 * 179.97438 * 19 18 17 35 35 H 1.08001 * 120.03697 * 179.70594 * 20 19 18 36 36 H 1.07998 * 119.88725 * 180.27682 * 21 20 19 37 37 H 1.09005 * 115.55081 * 148.20701 * 23 9 7 38 38 H 1.09000 * 117.50184 * 0.02562 * 24 23 9 39 39 H 1.09004 * 117.49988 * 145.01964 * 24 23 9 40 40 H 1.09009 * 117.50347 * 214.97857 * 25 23 9 41 41 H 1.09002 * 117.49962 * 359.97438 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3140 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 3.7081 1.3464 -0.0006 5 1 1.8893 2.3964 -1.2125 6 1 1.8893 2.3964 1.2125 7 6 2.0088 -1.2034 -0.0005 8 1 3.0379 -1.2326 -0.3269 9 7 1.3880 -2.3535 0.4133 10 6 0.5314 -2.3202 1.4534 11 8 0.3102 -1.2728 2.0236 12 6 -0.1505 -3.5846 1.9086 13 6 -1.1794 -3.2481 2.9899 14 1 -0.6963 -2.7444 3.8271 15 6 -2.2998 -2.3616 2.4058 16 6 -3.5437 -2.8471 3.1802 17 6 -3.2340 -4.2760 3.5716 18 6 -4.0743 -5.2941 3.9907 19 6 -3.5593 -6.5376 4.2995 20 6 -2.1998 -6.7666 4.1953 21 6 -1.3610 -5.7545 3.7716 22 6 -1.8755 -4.5065 3.4623 23 6 1.6556 -3.6187 -0.2750 24 6 2.6820 -3.6025 -1.4095 25 6 1.1915 -3.7447 -1.7274 26 1 -0.4850 0.8368 -0.0738 27 1 0.5916 -4.2719 2.3145 28 1 -0.6532 -4.0514 1.0616 29 1 -2.4158 -2.5382 1.3365 30 1 -2.1069 -1.3074 2.6042 31 1 -4.4250 -2.8129 2.5397 32 1 -3.6994 -2.2365 4.0696 33 1 -5.1359 -5.1147 4.0762 34 1 -4.2172 -7.3292 4.6264 35 1 -1.7947 -7.7371 4.4410 36 1 -0.2997 -5.9355 3.6861 37 1 1.6080 -4.5120 0.3479 38 1 3.1586 -2.6505 -1.6435 39 1 3.3095 -4.4852 -1.5332 40 1 0.8389 -4.7210 -2.0603 41 1 0.6867 -2.8863 -2.1707 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609651593.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:34 Heat of formation + Delta-G solvation = 10.852864 kcal Electronic energy + Delta-G solvation = -22665.009362 eV Core-core repulsion = 19510.091547 eV Total energy + Delta-G solvation = -3154.917815 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.27586 -40.12190 -37.83011 -36.57220 -34.67366 -33.21897 -32.64587 -30.69250 -29.61246 -27.44995 -25.54401 -23.46411 -23.21944 -22.75814 -21.80685 -21.58025 -20.38803 -18.29110 -17.78255 -17.16246 -16.87645 -16.26628 -16.03130 -15.78008 -15.59336 -15.45696 -15.15828 -14.50486 -14.12314 -13.92750 -13.76308 -13.51699 -13.45523 -13.07115 -12.86728 -12.72689 -12.56956 -12.32411 -12.13181 -12.00916 -11.91816 -11.79601 -11.60990 -11.57835 -11.51246 -11.19453 -10.72362 -9.88228 -9.63954 -9.36297 -8.86942 -8.14531 -5.86541 0.51172 0.54825 1.35709 1.43170 1.50386 2.29909 2.51174 2.90570 3.08941 3.19145 3.42508 3.55735 3.67762 4.00255 4.09665 4.16577 4.22503 4.27636 4.29677 4.34583 4.39234 4.43869 4.58134 4.63626 4.72784 4.73919 4.89783 4.90605 4.99218 5.06591 5.09095 5.18184 5.25051 5.32621 5.36975 5.41372 5.46558 5.56375 5.64845 5.67715 5.86582 6.18970 6.23462 7.08380 7.29725 7.79906 8.48212 8.93556 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020706 B = 0.005097 C = 0.004389 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.942500 B = 5492.368135 C = 6377.512103 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.855 5.855 2 C 0.021 3.979 3 Si 0.964 3.036 4 H -0.259 1.259 5 H -0.277 1.277 6 H -0.297 1.297 7 C -0.359 4.359 8 H 0.080 0.920 9 N -0.448 5.448 10 C 0.460 3.540 11 O -0.571 6.571 12 C -0.105 4.105 13 C -0.024 4.024 14 H 0.065 0.935 15 C -0.095 4.095 16 C -0.078 4.078 17 C -0.110 4.110 18 C -0.116 4.116 19 C -0.122 4.122 20 C -0.122 4.122 21 C -0.116 4.116 22 C -0.102 4.102 23 C 0.048 3.952 24 C -0.165 4.165 25 C -0.191 4.191 26 H 0.255 0.745 27 H 0.095 0.905 28 H 0.078 0.922 29 H 0.047 0.953 30 H 0.050 0.950 31 H 0.082 0.918 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.152 0.848 35 H 0.151 0.849 36 H 0.129 0.871 37 H 0.135 0.865 38 H 0.080 0.920 39 H 0.125 0.875 40 H 0.119 0.881 41 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.978 -15.071 4.744 16.566 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.186 4.186 3 Si 0.790 3.210 4 H -0.183 1.183 5 H -0.203 1.203 6 H -0.224 1.224 7 C -0.486 4.486 8 H 0.098 0.902 9 N -0.168 5.168 10 C 0.249 3.751 11 O -0.452 6.452 12 C -0.145 4.145 13 C -0.043 4.043 14 H 0.083 0.917 15 C -0.133 4.133 16 C -0.115 4.115 17 C -0.110 4.110 18 C -0.134 4.134 19 C -0.140 4.140 20 C -0.140 4.140 21 C -0.134 4.134 22 C -0.102 4.102 23 C -0.057 4.057 24 C -0.203 4.203 25 C -0.229 4.229 26 H 0.064 0.936 27 H 0.113 0.887 28 H 0.096 0.904 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.101 0.899 32 H 0.100 0.900 33 H 0.155 0.845 34 H 0.170 0.830 35 H 0.168 0.832 36 H 0.147 0.853 37 H 0.153 0.847 38 H 0.098 0.902 39 H 0.143 0.857 40 H 0.137 0.863 41 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.236 -14.411 5.096 16.157 hybrid contribution 0.395 1.580 -0.349 1.665 sum -4.841 -12.831 4.747 14.512 Atomic orbital electron populations 1.69999 1.07782 1.27001 1.44258 1.25880 0.95412 1.02101 0.95210 0.85343 0.79382 0.79455 0.76826 1.18279 1.20332 1.22387 1.19224 0.95825 0.85732 1.47864 0.90186 1.43112 1.41311 1.05931 1.26477 1.20587 0.82957 0.90432 0.81127 1.90479 1.63834 1.33989 1.56868 1.21497 0.98219 0.95930 0.98853 1.20234 0.94889 0.92531 0.96628 0.91681 1.22016 0.94013 0.98808 0.98426 1.21057 0.98178 0.92166 1.00051 1.20773 0.94300 0.95964 0.99962 1.20896 1.00093 0.92537 0.99877 1.21392 0.95865 0.96928 0.99833 1.21371 0.93731 0.99475 0.99425 1.20884 1.00863 0.91784 0.99870 1.20642 0.94922 0.94672 0.99944 1.22087 1.05411 0.89241 0.88953 1.23135 0.92085 1.03386 1.01686 1.23183 0.97680 1.02185 0.99890 0.93611 0.88653 0.90391 0.93432 0.93120 0.89903 0.90021 0.84496 0.83032 0.83179 0.85300 0.84710 0.90165 0.85690 0.86318 0.92294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -52.28 11.31 21.66 0.25 -52.04 16 2 C 0.02 1.20 4.32 84.93 0.37 1.57 16 3 Si 0.96 46.54 29.60 68.60 2.03 48.57 16 4 H -0.26 -11.75 7.11 99.48 0.71 -11.05 16 5 H -0.28 -12.78 7.11 99.48 0.71 -12.08 16 6 H -0.30 -14.95 7.11 99.48 0.71 -14.24 16 7 C -0.36 -19.96 8.36 84.04 0.70 -19.26 16 8 H 0.08 4.31 6.72 -2.91 -0.02 4.29 16 9 N -0.45 -22.56 2.88 -613.14 -1.77 -24.32 16 10 C 0.46 23.51 6.68 87.65 0.59 24.10 16 11 O -0.57 -34.13 12.09 -3.07 -0.04 -34.17 16 12 C -0.10 -4.07 3.54 29.85 0.11 -3.97 16 13 C -0.02 -0.91 2.51 -10.87 -0.03 -0.94 16 14 H 0.06 2.71 7.98 -2.39 -0.02 2.69 16 15 C -0.09 -3.78 5.61 31.51 0.18 -3.60 16 16 C -0.08 -2.38 6.77 30.52 0.21 -2.17 16 17 C -0.11 -3.18 6.14 -19.60 -0.12 -3.30 16 18 C -0.12 -2.66 10.04 22.30 0.22 -2.43 16 19 C -0.12 -2.36 10.05 22.24 0.22 -2.14 16 20 C -0.12 -2.46 10.05 22.24 0.22 -2.24 16 21 C -0.12 -2.94 9.74 22.30 0.22 -2.72 16 22 C -0.10 -3.15 5.61 -19.60 -0.11 -3.26 16 23 C 0.05 1.86 5.74 44.99 0.26 2.12 16 24 C -0.17 -5.59 9.80 30.62 0.30 -5.29 16 25 C -0.19 -6.79 10.37 30.61 0.32 -6.47 16 26 H 0.25 15.12 8.32 -92.71 -0.77 14.35 16 27 H 0.10 3.15 7.57 -2.39 -0.02 3.13 16 28 H 0.08 2.94 7.88 -2.39 -0.02 2.93 16 29 H 0.05 2.05 7.89 -2.39 -0.02 2.03 16 30 H 0.05 2.35 7.59 -2.39 -0.02 2.33 16 31 H 0.08 2.26 8.14 -2.39 -0.02 2.24 16 32 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 33 H 0.14 2.47 8.06 -2.91 -0.02 2.45 16 34 H 0.15 1.91 8.06 -2.91 -0.02 1.89 16 35 H 0.15 2.07 8.06 -2.91 -0.02 2.05 16 36 H 0.13 2.89 7.82 -2.91 -0.02 2.87 16 37 H 0.14 4.25 7.16 -2.38 -0.02 4.24 16 38 H 0.08 3.12 6.45 -2.39 -0.02 3.11 16 39 H 0.13 3.16 8.14 -2.38 -0.02 3.14 16 40 H 0.12 3.29 8.14 -2.38 -0.02 3.27 16 41 H 0.06 2.57 8.14 -2.39 -0.02 2.55 16 Total: -1.00 -72.60 332.76 5.14 -67.46 By element: Atomic # 1 Polarization: 23.49 SS G_CDS: 1.01 Total: 24.51 kcal Atomic # 6 Polarization: -33.66 SS G_CDS: 3.65 Total: -30.01 kcal Atomic # 7 Polarization: -74.84 SS G_CDS: -1.52 Total: -76.36 kcal Atomic # 8 Polarization: -34.13 SS G_CDS: -0.04 Total: -34.17 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Total: -72.60 5.14 -67.46 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609651593.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.315 kcal (2) G-P(sol) polarization free energy of solvation -72.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.714 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.138 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.463 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.853 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds