Wall clock time and date at job start Tue Mar 31 2020 06:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31411 * 1 3 3 Si 1.86801 * 120.00070 * 2 1 4 4 H 1.48505 * 109.46757 * 276.30478 * 3 2 1 5 5 H 1.48499 * 109.47171 * 36.30787 * 3 2 1 6 6 H 1.48506 * 109.46797 * 156.31021 * 3 2 1 7 7 C 1.38944 * 119.99596 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00795 * 344.51132 * 7 2 1 9 9 N 1.37109 * 119.99943 * 164.50947 * 7 2 1 10 10 C 1.34775 * 119.99712 * 304.61754 * 9 7 2 11 11 O 1.21288 * 120.00485 * 359.97438 * 10 9 7 12 12 C 1.50700 * 119.99553 * 179.97438 * 10 9 7 13 13 C 1.53004 * 109.46902 * 179.97438 * 12 10 9 14 14 H 1.08990 * 110.26884 * 305.69818 * 13 12 10 15 15 C 1.54346 * 110.30096 * 183.62161 * 13 12 10 16 16 C 1.54598 * 102.27585 * 267.39484 * 15 13 12 17 17 C 1.51364 * 105.18871 * 333.64327 * 16 15 13 18 18 C 1.38501 * 130.39321 * 197.20136 * 17 16 15 19 19 C 1.38101 * 120.21318 * 179.97438 * 18 17 16 20 20 C 1.38257 * 119.94138 * 0.02562 * 19 18 17 21 21 C 1.38109 * 119.92950 * 0.02562 * 20 19 18 22 22 C 1.38218 * 109.75678 * 17.20420 * 17 16 15 23 23 C 1.46501 * 120.00000 * 124.61114 * 9 7 2 24 24 C 1.52998 * 117.49712 * 356.87777 * 23 9 7 25 25 C 1.53004 * 117.49399 * 65.53592 * 23 9 7 26 26 H 0.97010 * 119.99904 * 0.02562 * 1 2 3 27 27 H 1.08998 * 109.47321 * 299.99480 * 12 10 9 28 28 H 1.08999 * 109.47388 * 59.99575 * 12 10 9 29 29 H 1.09003 * 110.82379 * 25.65614 * 15 13 12 30 30 H 1.09008 * 110.81921 * 149.20021 * 15 13 12 31 31 H 1.09004 * 110.28243 * 214.72074 * 16 15 13 32 32 H 1.08994 * 110.38925 * 92.62498 * 16 15 13 33 33 H 1.07992 * 119.89255 * 0.02562 * 18 17 16 34 34 H 1.08006 * 120.03109 * 180.02562 * 19 18 17 35 35 H 1.07994 * 120.04109 * 179.97438 * 20 19 18 36 36 H 1.07995 * 119.89169 * 180.02562 * 21 20 19 37 37 H 1.08991 * 115.55076 * 211.20480 * 23 9 7 38 38 H 1.09001 * 117.49785 * 214.99871 * 24 23 9 39 39 H 1.08994 * 117.50084 * 0.02562 * 24 23 9 40 40 H 1.08992 * 117.50259 * 359.97438 * 25 23 9 41 41 H 1.09001 * 117.49350 * 144.97651 * 25 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6177 0.0000 4 1 2.3624 2.1232 -1.3917 5 1 1.5186 2.6105 0.8290 6 1 3.6060 1.4053 0.5626 7 6 2.0088 -1.2033 0.0005 8 1 1.4982 -2.1216 0.2507 9 7 3.3425 -1.2251 -0.3166 10 6 3.7654 -0.7075 -1.4869 11 8 2.9661 -0.2228 -2.2598 12 6 5.2314 -0.7309 -1.8352 13 6 5.4400 -0.0867 -3.2072 14 1 4.8066 -0.5696 -3.9513 15 6 6.9232 -0.1817 -3.6235 16 6 7.4961 1.1579 -3.1064 17 6 6.3199 2.1104 -3.0851 18 6 6.2860 3.4934 -3.0200 19 6 5.0763 4.1594 -3.0135 20 6 3.8945 3.4442 -3.0714 21 6 3.9262 2.0650 -3.1352 22 6 5.1385 1.3952 -3.1429 23 6 4.3079 -1.8110 0.6168 24 6 3.7755 -2.3155 1.9595 25 6 4.2094 -3.3143 0.8837 26 1 -0.4850 0.8401 -0.0004 27 1 5.7923 -0.1755 -1.0836 28 1 5.5822 -1.7626 -1.8614 29 1 7.4092 -1.0267 -3.1358 30 1 7.0177 -0.2516 -4.7072 31 1 8.2678 1.5251 -3.7830 32 1 7.9017 1.0351 -2.1022 33 1 7.2087 4.0529 -2.9752 34 1 5.0533 5.2381 -2.9631 35 1 2.9475 3.9634 -3.0659 36 1 3.0027 1.5069 -3.1809 37 1 5.3027 -1.3660 0.6049 38 1 4.4203 -2.2025 2.8310 39 1 2.7070 -2.2120 2.1482 40 1 3.4263 -3.8673 0.3652 41 1 5.1397 -3.8583 1.0471 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000609651594.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:24:37 Heat of formation + Delta-G solvation = 10.778571 kcal Electronic energy + Delta-G solvation = -23349.344403 eV Core-core repulsion = 20194.423366 eV Total energy + Delta-G solvation = -3154.921037 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.51079 -40.29891 -37.98875 -36.84427 -34.94546 -33.38210 -32.69593 -30.92148 -29.63834 -27.56526 -25.63460 -23.53334 -23.24063 -22.90135 -21.78707 -21.54547 -20.52818 -18.75177 -17.84557 -17.33768 -17.17435 -16.52244 -16.14277 -15.83795 -15.62665 -15.32427 -15.17876 -14.84999 -14.63065 -14.04740 -13.82270 -13.53526 -13.41167 -13.19223 -13.00490 -12.86731 -12.45627 -12.40261 -12.22849 -12.13866 -11.91655 -11.82846 -11.65709 -11.61784 -11.36564 -11.23416 -10.78219 -10.19307 -9.55615 -9.38502 -9.16959 -8.43200 -6.28730 0.47074 0.55265 1.22067 1.32663 1.44541 2.01030 2.33710 2.71167 2.89694 2.97658 3.20716 3.55534 3.67572 3.95741 4.03672 4.11164 4.16262 4.19611 4.26919 4.31703 4.41219 4.44517 4.54370 4.63746 4.69726 4.79056 4.89272 4.92258 5.00617 5.06439 5.09350 5.19309 5.26092 5.28817 5.37561 5.41068 5.48252 5.60013 5.69471 5.74716 5.88745 5.95056 6.20599 6.84161 7.01683 7.37179 8.00042 8.67380 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.016218 B = 0.008008 C = 0.006095 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1726.026224 B = 3495.759922 C = 4592.762163 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.919 5.919 2 C 0.046 3.954 3 Si 0.929 3.071 4 H -0.236 1.236 5 H -0.308 1.308 6 H -0.269 1.269 7 C -0.324 4.324 8 H 0.051 0.949 9 N -0.466 5.466 10 C 0.463 3.537 11 O -0.576 6.576 12 C -0.115 4.115 13 C -0.039 4.039 14 H 0.062 0.938 15 C -0.104 4.104 16 C -0.074 4.074 17 C -0.105 4.105 18 C -0.122 4.122 19 C -0.124 4.124 20 C -0.157 4.157 21 C -0.110 4.110 22 C -0.109 4.109 23 C 0.041 3.959 24 C -0.178 4.178 25 C -0.173 4.173 26 H 0.269 0.731 27 H 0.094 0.906 28 H 0.121 0.879 29 H 0.106 0.894 30 H 0.082 0.918 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.150 0.850 34 H 0.146 0.854 35 H 0.111 0.889 36 H 0.107 0.893 37 H 0.142 0.858 38 H 0.124 0.876 39 H 0.071 0.929 40 H 0.066 0.934 41 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 20.685 1.851 -3.305 21.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.557 5.557 2 C -0.157 4.157 3 Si 0.756 3.244 4 H -0.160 1.160 5 H -0.237 1.237 6 H -0.194 1.194 7 C -0.452 4.452 8 H 0.069 0.931 9 N -0.189 5.189 10 C 0.255 3.745 11 O -0.458 6.458 12 C -0.154 4.154 13 C -0.058 4.058 14 H 0.080 0.920 15 C -0.141 4.141 16 C -0.111 4.111 17 C -0.105 4.105 18 C -0.140 4.140 19 C -0.142 4.142 20 C -0.175 4.175 21 C -0.128 4.128 22 C -0.109 4.109 23 C -0.063 4.063 24 C -0.216 4.216 25 C -0.211 4.211 26 H 0.079 0.921 27 H 0.113 0.887 28 H 0.139 0.861 29 H 0.125 0.875 30 H 0.101 0.899 31 H 0.116 0.884 32 H 0.112 0.888 33 H 0.168 0.832 34 H 0.163 0.837 35 H 0.129 0.871 36 H 0.125 0.875 37 H 0.160 0.840 38 H 0.142 0.858 39 H 0.090 0.910 40 H 0.085 0.915 41 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 20.106 2.179 -3.707 20.560 hybrid contribution -1.498 0.765 0.313 1.711 sum 18.607 2.943 -3.394 19.142 Atomic orbital electron populations 1.69842 1.08050 1.28311 1.49531 1.26004 0.95279 1.01833 0.92606 0.86039 0.78480 0.80011 0.79884 1.16000 1.23695 1.19362 1.18351 0.84173 0.93337 1.49326 0.93084 1.43361 1.05381 1.55259 1.14920 1.21517 0.92159 0.79911 0.80935 1.90457 1.58083 1.47225 1.50056 1.21697 0.91670 1.04009 0.98059 1.20519 0.98671 0.90783 0.95860 0.91961 1.22433 0.91298 0.98330 1.02031 1.21156 0.94506 0.92273 1.03120 1.21129 0.96160 0.94288 0.98924 1.20905 0.98510 0.93094 1.01474 1.21308 0.91891 1.00720 1.00262 1.21250 0.99121 0.94072 1.03061 1.21289 0.98790 0.94601 0.98143 1.20707 0.93048 0.96588 1.00543 1.22212 0.94406 0.95551 0.94143 1.23150 1.01748 1.03857 0.92805 1.23296 1.03558 0.91954 1.02317 0.92126 0.88726 0.86084 0.87512 0.89917 0.88431 0.88815 0.83220 0.83671 0.87122 0.87509 0.84027 0.85812 0.91042 0.91480 0.84797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.92 -59.46 13.96 21.66 0.30 -59.16 16 2 C 0.05 2.81 4.96 84.92 0.42 3.23 16 3 Si 0.93 49.65 25.16 68.60 1.73 51.38 16 4 H -0.24 -12.52 3.88 99.48 0.39 -12.14 16 5 H -0.31 -16.48 7.11 99.48 0.71 -15.77 16 6 H -0.27 -13.77 7.11 99.48 0.71 -13.06 16 7 C -0.32 -18.89 7.89 84.04 0.66 -18.22 16 8 H 0.05 3.26 7.91 -2.91 -0.02 3.24 16 9 N -0.47 -22.13 2.23 -613.14 -1.37 -23.50 16 10 C 0.46 21.15 5.70 87.66 0.50 21.65 16 11 O -0.58 -31.03 9.75 -3.06 -0.03 -31.06 16 12 C -0.11 -3.62 3.71 29.85 0.11 -3.51 16 13 C -0.04 -1.20 2.50 -10.87 -0.03 -1.23 16 14 H 0.06 2.17 7.96 -2.39 -0.02 2.15 16 15 C -0.10 -1.98 6.62 31.59 0.21 -1.77 16 16 C -0.07 -1.37 6.77 30.60 0.21 -1.16 16 17 C -0.10 -2.92 6.14 -19.60 -0.12 -3.04 16 18 C -0.12 -3.17 10.04 22.30 0.22 -2.94 16 19 C -0.12 -3.61 10.05 22.24 0.22 -3.38 16 20 C -0.16 -5.79 9.56 22.24 0.21 -5.58 16 21 C -0.11 -4.63 7.07 22.30 0.16 -4.47 16 22 C -0.11 -3.85 5.15 -19.59 -0.10 -3.95 16 23 C 0.04 1.45 5.87 44.99 0.26 1.72 16 24 C -0.18 -6.01 9.83 30.62 0.30 -5.71 16 25 C -0.17 -5.19 10.36 30.62 0.32 -4.87 16 26 H 0.27 16.53 8.31 -92.70 -0.77 15.75 16 27 H 0.09 2.71 7.56 -2.39 -0.02 2.69 16 28 H 0.12 3.00 8.08 -2.39 -0.02 2.98 16 29 H 0.11 1.45 7.88 -2.39 -0.02 1.43 16 30 H 0.08 1.43 8.14 -2.38 -0.02 1.41 16 31 H 0.10 1.35 8.14 -2.38 -0.02 1.33 16 32 H 0.09 1.48 8.14 -2.39 -0.02 1.46 16 33 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 34 H 0.15 3.24 8.06 -2.91 -0.02 3.22 16 35 H 0.11 3.97 8.06 -2.91 -0.02 3.95 16 36 H 0.11 5.40 4.96 -2.91 -0.01 5.39 16 37 H 0.14 3.94 6.96 -2.39 -0.02 3.93 16 38 H 0.12 3.19 8.14 -2.39 -0.02 3.18 16 39 H 0.07 3.02 6.98 -2.39 -0.02 3.00 16 40 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 41 H 0.13 2.78 8.14 -2.39 -0.02 2.76 16 Total: -1.00 -78.51 321.02 4.89 -73.63 By element: Atomic # 1 Polarization: 21.28 SS G_CDS: 0.70 Total: 21.98 kcal Atomic # 6 Polarization: -36.82 SS G_CDS: 3.56 Total: -33.25 kcal Atomic # 7 Polarization: -81.60 SS G_CDS: -1.07 Total: -82.66 kcal Atomic # 8 Polarization: -31.03 SS G_CDS: -0.03 Total: -31.06 kcal Atomic # 14 Polarization: 49.65 SS G_CDS: 1.73 Total: 51.38 kcal Total: -78.51 4.89 -73.63 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000609651594.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.405 kcal (2) G-P(sol) polarization free energy of solvation -78.515 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.890 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.626 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds