Wall clock time and date at job start Tue Mar 31 2020 05:29:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86795 * 120.00429 * 2 1 4 4 H 1.48497 * 109.47232 * 270.00111 * 3 2 1 5 5 H 1.48504 * 109.46968 * 29.99706 * 3 2 1 6 6 H 1.48499 * 109.47434 * 149.99801 * 3 2 1 7 7 C 1.37882 * 119.99656 * 179.97438 * 2 1 3 8 8 H 1.08000 * 119.99671 * 180.02562 * 7 2 1 9 9 C 1.50694 * 120.00240 * 0.02562 * 7 2 1 10 10 N 1.46900 * 109.47283 * 180.02562 * 9 7 2 11 11 C 1.46953 * 111.00284 * 58.30070 * 10 9 7 12 12 C 1.53481 * 109.77189 * 164.92826 * 11 10 9 13 13 N 1.46255 * 108.13852 * 49.60753 * 12 11 10 14 14 C 1.36615 * 123.90573 * 343.79162 * 13 12 11 15 15 N 1.29734 * 107.50480 * 179.70068 * 14 13 12 16 16 N 1.28938 * 109.86490 * 0.11086 * 15 14 13 17 17 C 1.32071 * 109.78721 * 0.02567 * 16 15 14 18 18 C 1.47940 * 126.66680 * 179.97438 * 17 16 15 19 19 C 1.39941 * 120.55773 * 14.60310 * 18 17 16 20 20 C 1.38377 * 118.29457 * 179.71645 * 19 18 17 21 21 C 1.38341 * 119.29873 * 0.57762 * 20 19 18 22 22 N 1.31905 * 121.07028 * 359.68888 * 21 20 19 23 23 C 1.31711 * 121.87080 * 0.02562 * 22 21 20 24 24 C 1.47391 * 110.99666 * 293.94964 * 10 9 7 25 25 H 0.96996 * 119.99763 * 0.02562 * 1 2 3 26 26 H 1.09000 * 109.47365 * 59.99440 * 9 7 2 27 27 H 1.09010 * 109.47014 * 299.99737 * 9 7 2 28 28 H 1.09001 * 109.42118 * 285.01920 * 11 10 9 29 29 H 1.09001 * 109.42623 * 44.83457 * 11 10 9 30 30 H 1.09001 * 109.72815 * 169.26698 * 12 11 10 31 31 H 1.09002 * 109.72459 * 289.90107 * 12 11 10 32 32 H 1.07994 * 120.85263 * 359.97438 * 19 18 17 33 33 H 1.08000 * 120.34748 * 180.26643 * 20 19 18 34 34 H 1.07998 * 119.46163 * 179.69546 * 21 20 19 35 35 H 1.08001 * 119.71720 * 180.02562 * 23 22 21 36 36 H 1.09002 * 109.75987 * 294.01129 * 24 10 9 37 37 H 1.08997 * 109.75825 * 54.71474 * 24 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2493 1.6176 0.0000 4 1 2.4968 2.0463 -1.4000 5 1 1.4467 2.6526 0.7000 6 1 3.5468 1.4401 0.7001 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1941 0.0010 9 6 1.2510 -2.4992 0.0005 10 7 2.2055 -3.6158 0.0018 11 6 3.0948 -3.5472 1.1697 12 6 3.8127 -4.8910 1.3553 13 7 4.3870 -5.2820 0.0683 14 6 4.0230 -4.7308 -1.1276 15 7 4.7306 -5.3029 -2.0524 16 7 5.5152 -6.1794 -1.5245 17 6 5.3394 -6.2063 -0.2158 18 6 6.0457 -7.0732 0.7528 19 6 7.2082 -7.7572 0.3796 20 6 7.8343 -8.5506 1.3247 21 6 7.2897 -8.6511 2.5924 22 7 6.1892 -7.9990 2.9142 23 6 5.5606 -7.2274 2.0514 24 6 2.9743 -3.6548 -1.2552 25 1 -0.4849 0.8400 -0.0004 26 1 0.6246 -2.5571 -0.8896 27 1 0.6240 -2.5567 0.8904 28 1 3.8331 -2.7599 1.0173 29 1 2.5072 -3.3242 2.0602 30 1 4.6060 -4.7853 2.0953 31 1 3.0997 -5.6464 1.6856 32 1 7.6087 -7.6647 -0.6190 33 1 8.7359 -9.0898 1.0737 34 1 7.7735 -9.2736 3.3306 35 1 4.6622 -6.7090 2.3523 36 1 2.3088 -3.8856 -2.0871 37 1 3.4541 -2.6907 -1.4238 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000610893447.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:55 Heat of formation + Delta-G solvation = 126.105327 kcal Electronic energy + Delta-G solvation = -21801.987442 eV Core-core repulsion = 18580.819756 eV Total energy + Delta-G solvation = -3221.167686 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.95889 -40.21863 -37.75055 -34.75346 -33.44864 -32.62795 -31.88303 -30.45360 -29.40440 -27.25174 -25.00299 -24.35591 -24.24424 -23.18921 -21.58665 -20.90891 -19.36599 -17.55212 -17.18521 -16.69241 -16.47437 -16.16888 -15.72712 -15.03693 -14.81946 -14.23698 -14.16388 -13.87169 -13.64793 -13.59921 -13.31837 -12.48339 -12.42900 -12.22252 -11.67331 -11.31484 -11.24050 -11.06904 -10.99267 -10.70057 -10.55000 -10.32586 -10.17044 -9.93303 -9.88757 -9.76724 -9.74228 -8.62041 -8.47220 -7.63632 -6.22738 -4.33608 0.44454 0.94459 2.12130 2.51044 2.97851 3.17291 3.25196 3.26681 3.58971 3.90360 4.15581 4.25556 4.34518 4.51004 4.53727 4.64673 4.68026 4.74425 5.07114 5.09490 5.14004 5.17528 5.34639 5.46226 5.73674 5.80633 5.89434 6.01697 6.08553 6.14023 6.23134 6.28041 6.31892 6.85112 6.94080 7.27316 7.55833 7.60611 7.69174 7.79511 8.00643 8.73918 8.82851 9.35389 10.83035 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.028501 B = 0.003835 C = 0.003680 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 982.179802 B = 7298.607357 C = 7607.395094 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.071 3.929 3 Si 0.891 3.109 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.275 1.275 7 C -0.563 4.563 8 H 0.057 0.943 9 C 0.190 3.810 10 N -0.542 5.542 11 C 0.048 3.952 12 C 0.100 3.900 13 N -0.461 5.461 14 C 0.212 3.788 15 N -0.295 5.295 16 N -0.282 5.282 17 C 0.200 3.800 18 C -0.053 4.053 19 C -0.037 4.037 20 C -0.169 4.169 21 C 0.101 3.899 22 N -0.478 5.478 23 C 0.107 3.893 24 C 0.139 3.861 25 H 0.265 0.735 26 H 0.040 0.960 27 H 0.041 0.959 28 H 0.053 0.947 29 H 0.101 0.899 30 H 0.093 0.907 31 H 0.096 0.904 32 H 0.148 0.852 33 H 0.142 0.858 34 H 0.160 0.840 35 H 0.159 0.841 36 H 0.106 0.894 37 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.698 -13.642 5.257 18.724 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.133 4.133 3 Si 0.718 3.282 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.200 1.200 7 C -0.602 4.602 8 H 0.075 0.925 9 C 0.066 3.934 10 N -0.267 5.267 11 C -0.081 4.081 12 C -0.023 4.023 13 N -0.151 5.151 14 C -0.055 4.055 15 N -0.135 5.135 16 N -0.124 5.124 17 C -0.065 4.065 18 C -0.058 4.058 19 C -0.065 4.065 20 C -0.189 4.189 21 C -0.056 4.056 22 N -0.186 5.186 23 C -0.053 4.053 24 C 0.009 3.991 25 H 0.075 0.925 26 H 0.058 0.942 27 H 0.059 0.941 28 H 0.071 0.929 29 H 0.120 0.880 30 H 0.111 0.889 31 H 0.114 0.886 32 H 0.166 0.834 33 H 0.160 0.840 34 H 0.177 0.823 35 H 0.176 0.824 36 H 0.124 0.876 37 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 11.425 -14.351 4.787 18.958 hybrid contribution 0.725 2.152 0.342 2.297 sum 12.150 -12.199 5.129 17.965 Atomic orbital electron populations 1.69924 1.06047 1.27277 1.48967 1.24931 0.94770 0.99275 0.94371 0.86615 0.79825 0.83355 0.78394 1.20391 1.20980 1.19956 1.21665 0.93232 0.91958 1.53370 0.92465 1.19824 0.90125 0.84495 0.98987 1.62730 1.16311 1.48061 0.99574 1.22266 0.96596 0.92144 0.97120 1.22557 0.97857 0.99964 0.81914 1.46320 1.29709 1.28968 1.10146 1.25389 0.99902 0.99386 0.80872 1.73919 1.06952 1.07252 1.25385 1.74812 1.19135 1.15765 1.02731 1.22254 0.94891 0.95673 0.93656 1.18494 0.96262 0.98181 0.92826 1.21678 0.92097 0.92247 1.00464 1.22142 1.01811 1.00432 0.94484 1.22930 0.91651 0.95760 0.95280 1.67718 1.08513 1.06896 1.35445 1.23108 0.98790 0.94969 0.88386 1.20722 0.90756 0.92278 0.95376 0.92481 0.94225 0.94124 0.92893 0.88039 0.88895 0.88619 0.83437 0.83992 0.82301 0.82377 0.87558 0.89952 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -24.24 13.29 55.43 0.74 -23.50 16 2 C 0.07 1.84 5.46 -17.82 -0.10 1.74 16 3 Si 0.89 20.16 29.54 -169.99 -5.02 15.14 16 4 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 5 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 6 H -0.27 -6.15 7.11 56.52 0.40 -5.75 16 7 C -0.56 -13.98 7.66 -34.44 -0.26 -14.24 16 8 H 0.06 1.41 6.00 -52.49 -0.31 1.09 16 9 C 0.19 4.34 5.07 -4.98 -0.03 4.31 16 10 N -0.54 -10.23 4.85 -236.67 -1.15 -11.38 16 11 C 0.05 0.78 4.89 -3.55 -0.02 0.76 16 12 C 0.10 1.31 5.36 -3.93 -0.02 1.29 16 13 N -0.46 -7.37 3.17 -111.00 -0.35 -7.72 16 14 C 0.21 3.86 7.89 -154.54 -1.22 2.64 16 15 N -0.29 -5.74 12.18 32.91 0.40 -5.34 16 16 N -0.28 -5.15 12.11 32.40 0.39 -4.76 16 17 C 0.20 3.16 7.77 -154.76 -1.20 1.96 16 18 C -0.05 -0.68 5.89 -104.82 -0.62 -1.29 16 19 C -0.04 -0.40 9.85 -38.89 -0.38 -0.78 16 20 C -0.17 -1.37 10.10 -39.49 -0.40 -1.77 16 21 C 0.10 0.88 11.17 -17.48 -0.20 0.69 16 22 N -0.48 -5.40 10.35 -12.92 -0.13 -5.54 16 23 C 0.11 1.25 10.28 -17.14 -0.18 1.07 16 24 C 0.14 2.57 5.72 -4.66 -0.03 2.54 16 25 H 0.27 6.93 8.31 -40.82 -0.34 6.59 16 26 H 0.04 0.98 8.12 -51.93 -0.42 0.55 16 27 H 0.04 0.98 8.12 -51.92 -0.42 0.56 16 28 H 0.05 0.94 6.89 -51.93 -0.36 0.58 16 29 H 0.10 1.57 7.99 -51.93 -0.41 1.16 16 30 H 0.09 1.00 7.18 -51.93 -0.37 0.62 16 31 H 0.10 1.11 7.63 -51.93 -0.40 0.72 16 32 H 0.15 1.50 8.02 -52.49 -0.42 1.08 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.16 0.88 8.06 -52.49 -0.42 0.45 16 35 H 0.16 1.66 4.93 -52.49 -0.26 1.40 16 36 H 0.11 1.91 8.14 -51.93 -0.42 1.49 16 37 H 0.08 1.63 6.77 -51.93 -0.35 1.28 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -30.10 308.11 -9.26 -39.36 By element: Atomic # 1 Polarization: 4.30 SS G_CDS: -4.13 Total: 0.17 kcal Atomic # 6 Polarization: 3.57 SS G_CDS: -4.64 Total: -1.07 kcal Atomic # 7 Polarization: -58.14 SS G_CDS: -0.10 Total: -58.24 kcal Atomic # 14 Polarization: 20.16 SS G_CDS: -5.02 Total: 15.14 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -30.10 -9.26 -39.36 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000610893447.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.465 kcal (2) G-P(sol) polarization free energy of solvation -30.100 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.365 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.360 kcal (6) G-S(sol) free energy of system = (1) + (5) 126.105 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds