Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99357 * 2 1 4 4 H 1.48498 * 109.47178 * 274.79749 * 3 2 1 5 5 H 1.48495 * 109.47119 * 34.79948 * 3 2 1 6 6 H 1.48504 * 109.46505 * 154.79857 * 3 2 1 7 7 C 1.37874 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99965 * 4.87147 * 7 2 1 9 9 C 1.50698 * 119.99865 * 184.86161 * 7 2 1 10 10 C 1.53003 * 115.54931 * 84.77684 * 9 7 2 11 11 N 1.46503 * 109.47058 * 39.78711 * 10 9 7 12 12 C 1.38588 * 120.00206 * 185.08923 * 11 10 9 13 13 C 1.39362 * 120.49661 * 354.89502 * 12 11 10 14 14 C 1.38881 * 118.27414 * 179.97438 * 13 12 11 15 15 N 1.39613 * 120.46468 * 179.97438 * 14 13 12 16 16 C 1.37215 * 126.49452 * 180.02562 * 15 14 13 17 17 C 1.34594 * 106.82646 * 179.97438 * 16 15 14 18 18 N 1.34166 * 108.23142 * 0.24491 * 17 16 15 19 19 C 1.30463 * 109.37967 * 359.58784 * 18 17 16 20 20 N 1.33060 * 119.06620 * 0.25052 * 14 13 12 21 21 C 1.31722 * 120.91560 * 359.48566 * 20 14 13 22 22 N 1.31769 * 121.90166 * 0.53140 * 21 20 14 23 23 C 1.53002 * 117.51753 * 230.47307 * 9 7 2 24 24 C 1.53000 * 117.50288 * 299.10489 * 9 7 2 25 25 H 0.96999 * 120.00784 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47080 * 279.79488 * 10 9 7 27 27 H 1.08992 * 109.47329 * 159.78734 * 10 9 7 28 28 H 0.97000 * 119.99819 * 5.08994 * 11 10 9 29 29 H 1.07994 * 120.86151 * 359.95387 * 13 12 11 30 30 H 1.08006 * 126.58954 * 359.95243 * 16 15 14 31 31 H 1.08007 * 125.87950 * 179.97438 * 17 16 15 32 32 H 1.08000 * 125.72201 * 180.16291 * 19 18 17 33 33 H 1.07996 * 119.04999 * 180.24889 * 21 20 14 34 34 H 1.09003 * 117.49424 * 214.96918 * 23 9 7 35 35 H 1.08998 * 117.49856 * 359.97438 * 23 9 7 36 36 H 1.09000 * 117.49836 * 359.97438 * 24 9 7 37 37 H 1.08994 * 117.49971 * 144.97232 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3950 2.1051 -1.3951 5 1 1.5007 2.6213 0.7990 6 1 3.5936 1.4132 0.5962 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0804 9 6 3.5075 -1.1962 0.1101 10 6 4.0645 -1.1305 1.5336 11 7 3.2493 -1.9689 2.4161 12 6 3.4974 -1.9859 3.7795 13 6 4.5848 -1.2936 4.3092 14 6 4.7898 -1.3417 5.6819 15 7 5.8652 -0.6654 6.2611 16 6 6.1832 -0.6291 7.5954 17 6 7.2873 0.1318 7.7122 18 7 7.6361 0.5561 6.4881 19 6 6.7961 0.0815 5.6098 20 7 3.9502 -2.0459 6.4367 21 6 2.9301 -2.6834 5.9001 22 7 2.7007 -2.6632 4.6027 23 6 4.2907 -2.0153 -0.9179 24 6 4.2981 -0.4870 -0.9913 25 1 -0.4851 0.8400 0.0004 26 1 4.0391 -0.0995 1.8865 27 1 5.0931 -1.4910 1.5383 28 1 2.5359 -2.5121 2.0462 29 1 5.2508 -0.7346 3.6688 30 1 5.6499 -1.1170 8.3979 31 1 7.8012 0.3645 8.6332 32 1 6.8318 0.2563 4.5446 33 1 2.2651 -3.2426 6.5415 34 1 5.2029 -2.5072 -0.5799 35 1 3.7190 -2.5530 -1.6741 36 1 3.7311 -0.0191 -1.7961 37 1 5.2147 0.0267 -0.7016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000619527653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 153.088152 kcal Electronic energy + Delta-G solvation = -21630.488762 eV Core-core repulsion = 18410.491140 eV Total energy + Delta-G solvation = -3219.997622 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -42.44727 -40.61187 -37.80582 -35.59247 -34.51641 -32.31682 -31.65670 -30.60784 -29.32805 -26.74331 -25.63324 -24.60209 -23.23747 -21.89396 -21.29134 -21.02591 -19.46596 -18.86430 -17.59465 -16.54256 -15.91594 -15.79894 -15.57040 -15.25202 -14.75602 -14.53601 -14.26168 -14.10196 -13.97888 -13.55350 -13.49018 -13.30261 -12.82454 -12.46656 -11.63012 -11.30427 -11.04811 -10.73188 -10.69483 -10.52993 -10.40135 -10.31900 -9.74676 -9.37218 -9.28251 -9.24651 -8.82216 -8.70960 -8.69475 -7.85439 -6.31651 -4.38434 0.68746 1.33882 2.26769 2.30412 2.96606 3.13282 3.23250 3.25953 3.31469 3.98538 4.14579 4.23316 4.42239 4.50159 4.63460 4.85458 4.96097 5.02683 5.15922 5.34038 5.42641 5.43038 5.53482 5.70545 5.83277 5.87686 5.96848 6.06516 6.24439 6.27742 6.48194 6.50373 6.68900 6.87099 6.90024 7.00512 7.44479 7.52622 7.80126 7.96099 8.23852 8.37586 8.68986 9.30312 10.78991 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018368 B = 0.004697 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.035796 B = 5960.147950 C = 6419.443673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.085 3.915 3 Si 0.877 3.123 4 H -0.278 1.278 5 H -0.293 1.293 6 H -0.256 1.256 7 C -0.499 4.499 8 H 0.080 0.920 9 C -0.016 4.016 10 C 0.150 3.850 11 N -0.660 5.660 12 C 0.465 3.535 13 C -0.311 4.311 14 C 0.414 3.586 15 N -0.408 5.408 16 C -0.022 4.022 17 C -0.035 4.035 18 N -0.481 5.481 19 C 0.199 3.801 20 N -0.593 5.593 21 C 0.370 3.630 22 N -0.583 5.583 23 C -0.177 4.177 24 C -0.191 4.191 25 H 0.267 0.733 26 H 0.063 0.937 27 H 0.050 0.950 28 H 0.424 0.576 29 H 0.144 0.856 30 H 0.183 0.817 31 H 0.176 0.824 32 H 0.211 0.789 33 H 0.202 0.798 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.331 -2.450 9.859 14.489 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.521 5.521 2 C -0.119 4.119 3 Si 0.705 3.295 4 H -0.203 1.203 5 H -0.220 1.220 6 H -0.181 1.181 7 C -0.536 4.536 8 H 0.098 0.902 9 C -0.017 4.017 10 C 0.026 3.974 11 N -0.287 5.287 12 C 0.217 3.783 13 C -0.343 4.343 14 C 0.181 3.819 15 N -0.090 5.090 16 C -0.152 4.152 17 C -0.180 4.180 18 N -0.198 5.198 19 C -0.083 4.083 20 N -0.318 5.318 21 C 0.079 3.921 22 N -0.309 5.309 23 C -0.214 4.214 24 C -0.228 4.228 25 H 0.077 0.923 26 H 0.081 0.919 27 H 0.068 0.932 28 H 0.264 0.736 29 H 0.162 0.838 30 H 0.200 0.800 31 H 0.193 0.807 32 H 0.228 0.772 33 H 0.218 0.782 34 H 0.092 0.908 35 H 0.107 0.893 36 H 0.108 0.892 37 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges 10.300 -2.228 10.014 14.537 hybrid contribution -0.139 0.807 -0.549 0.986 sum 10.160 -1.421 9.465 13.959 Atomic orbital electron populations 1.69883 1.06428 1.27465 1.48364 1.24976 0.94535 0.99134 0.93301 0.86894 0.80697 0.83451 0.78460 1.20349 1.22006 1.18054 1.20126 0.86225 0.94740 1.52482 0.90182 1.19512 0.95086 1.01180 0.85917 1.21317 0.91734 0.93380 0.91002 1.44860 1.36950 1.45993 1.00884 1.18380 0.86749 0.86367 0.86757 1.21431 1.05125 1.13524 0.94212 1.17959 0.86263 0.89360 0.88269 1.43117 1.20482 1.37324 1.08105 1.22960 1.00729 1.05923 0.85549 1.22398 0.97455 1.01664 0.96449 1.70343 1.25839 1.23233 1.00375 1.25385 0.87339 0.95324 1.00205 1.67759 1.08136 1.15633 1.40253 1.24468 0.89642 0.89895 0.88100 1.68048 1.31551 1.25977 1.05278 1.22931 1.01153 0.93104 1.04251 1.22964 1.01473 0.94916 1.03480 0.92282 0.91910 0.93186 0.73608 0.83825 0.80022 0.80729 0.77233 0.78194 0.90753 0.89277 0.89156 0.90653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.13 13.96 55.43 0.77 -24.36 16 2 C 0.09 2.22 5.47 -17.82 -0.10 2.13 16 3 Si 0.88 19.96 25.19 -169.99 -4.28 15.68 16 4 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 6 H -0.26 -5.32 5.24 56.52 0.30 -5.02 16 7 C -0.50 -12.21 8.09 -34.44 -0.28 -12.48 16 8 H 0.08 2.16 8.06 -52.49 -0.42 1.74 16 9 C -0.02 -0.31 1.13 -155.66 -0.18 -0.49 16 10 C 0.15 2.61 4.83 -4.04 -0.02 2.59 16 11 N -0.66 -11.72 5.44 -60.31 -0.33 -12.05 16 12 C 0.46 7.77 7.70 -154.75 -1.19 6.58 16 13 C -0.31 -4.64 8.78 -38.93 -0.34 -4.98 16 14 C 0.41 6.09 7.53 -153.95 -1.16 4.93 16 15 N -0.41 -5.54 2.98 -63.70 -0.19 -5.73 16 16 C -0.02 -0.27 11.21 -16.43 -0.18 -0.45 16 17 C -0.04 -0.42 11.85 -17.82 -0.21 -0.63 16 18 N -0.48 -6.66 11.24 -14.46 -0.16 -6.82 16 19 C 0.20 2.56 11.93 -89.55 -1.07 1.49 16 20 N -0.59 -8.55 10.02 -13.73 -0.14 -8.69 16 21 C 0.37 5.08 12.28 -92.24 -1.13 3.95 16 22 N -0.58 -9.52 10.47 -13.86 -0.15 -9.66 16 23 C -0.18 -3.09 9.88 -26.73 -0.26 -3.35 16 24 C -0.19 -3.49 7.33 -26.73 -0.20 -3.69 16 25 H 0.27 7.21 8.31 -40.82 -0.34 6.87 16 26 H 0.06 1.13 6.44 -51.93 -0.33 0.80 16 27 H 0.05 0.75 7.82 -51.93 -0.41 0.34 16 28 H 0.42 8.14 7.68 -40.82 -0.31 7.82 16 29 H 0.14 1.87 5.70 -52.49 -0.30 1.57 16 30 H 0.18 1.86 8.06 -52.48 -0.42 1.44 16 31 H 0.18 1.54 8.06 -52.48 -0.42 1.11 16 32 H 0.21 2.09 7.12 -52.49 -0.37 1.71 16 33 H 0.20 1.93 8.06 -52.49 -0.42 1.51 16 34 H 0.07 1.12 8.08 -51.93 -0.42 0.70 16 35 H 0.09 1.59 8.14 -51.93 -0.42 1.17 16 36 H 0.09 1.77 7.13 -51.93 -0.37 1.40 16 37 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 LS Contribution 313.56 15.07 4.73 4.73 Total: -1.00 -29.39 313.56 -10.36 -39.75 By element: Atomic # 1 Polarization: 15.86 SS G_CDS: -4.29 Total: 11.56 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -6.32 Total: -4.40 kcal Atomic # 7 Polarization: -67.13 SS G_CDS: -0.19 Total: -67.32 kcal Atomic # 14 Polarization: 19.96 SS G_CDS: -4.28 Total: 15.68 kcal Total LS contribution 4.73 Total: 4.73 kcal Total: -29.39 -10.36 -39.75 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 192.837 kcal (2) G-P(sol) polarization free energy of solvation -29.386 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 163.450 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.362 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.748 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.088 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds