Wall clock time and date at job start Tue Mar 31 2020 05:34:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86805 * 119.99357 * 2 1 4 4 H 1.48498 * 109.47178 * 274.79749 * 3 2 1 5 5 H 1.48495 * 109.47119 * 34.79948 * 3 2 1 6 6 H 1.48504 * 109.46505 * 154.79857 * 3 2 1 7 7 C 1.37874 * 120.00399 * 180.02562 * 2 1 3 8 8 H 1.07996 * 119.99965 * 4.87147 * 7 2 1 9 9 C 1.50698 * 119.99865 * 184.86161 * 7 2 1 10 10 C 1.53003 * 115.54931 * 84.77684 * 9 7 2 11 11 N 1.46503 * 109.47058 * 39.78711 * 10 9 7 12 12 C 1.38588 * 120.00206 * 185.08923 * 11 10 9 13 13 C 1.39362 * 120.49661 * 354.89502 * 12 11 10 14 14 C 1.38881 * 118.27414 * 179.97438 * 13 12 11 15 15 N 1.39613 * 120.46468 * 179.97438 * 14 13 12 16 16 C 1.37215 * 126.49452 * 180.02562 * 15 14 13 17 17 C 1.34594 * 106.82646 * 179.97438 * 16 15 14 18 18 N 1.34166 * 108.23142 * 0.24491 * 17 16 15 19 19 C 1.30463 * 109.37967 * 359.58784 * 18 17 16 20 20 N 1.33060 * 119.06620 * 0.25052 * 14 13 12 21 21 C 1.31722 * 120.91560 * 359.48566 * 20 14 13 22 22 N 1.31769 * 121.90166 * 0.53140 * 21 20 14 23 23 C 1.53002 * 117.51753 * 230.47307 * 9 7 2 24 24 C 1.53000 * 117.50288 * 299.10489 * 9 7 2 25 25 H 0.96999 * 120.00784 * 359.97438 * 1 2 3 26 26 H 1.09002 * 109.47080 * 279.79488 * 10 9 7 27 27 H 1.08992 * 109.47329 * 159.78734 * 10 9 7 28 28 H 0.97000 * 119.99819 * 5.08994 * 11 10 9 29 29 H 1.07994 * 120.86151 * 359.95387 * 13 12 11 30 30 H 1.08006 * 126.58954 * 359.95243 * 16 15 14 31 31 H 1.08007 * 125.87950 * 179.97438 * 17 16 15 32 32 H 1.08000 * 125.72201 * 180.16291 * 19 18 17 33 33 H 1.07996 * 119.04999 * 180.24889 * 21 20 14 34 34 H 1.09003 * 117.49424 * 214.96918 * 23 9 7 35 35 H 1.08998 * 117.49856 * 359.97438 * 23 9 7 36 36 H 1.09000 * 117.49836 * 359.97438 * 24 9 7 37 37 H 1.08994 * 117.49971 * 144.97232 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2490 1.6179 0.0000 4 1 2.3950 2.1051 -1.3951 5 1 1.5007 2.6213 0.7990 6 1 3.5936 1.4132 0.5962 7 6 2.0046 -1.1940 -0.0005 8 1 1.4676 -2.1276 -0.0804 9 6 3.5075 -1.1962 0.1101 10 6 4.0645 -1.1305 1.5336 11 7 3.2493 -1.9689 2.4161 12 6 3.4974 -1.9859 3.7795 13 6 4.5848 -1.2936 4.3092 14 6 4.7898 -1.3417 5.6819 15 7 5.8652 -0.6654 6.2611 16 6 6.1832 -0.6291 7.5954 17 6 7.2873 0.1318 7.7122 18 7 7.6361 0.5561 6.4881 19 6 6.7961 0.0815 5.6098 20 7 3.9502 -2.0459 6.4367 21 6 2.9301 -2.6834 5.9001 22 7 2.7007 -2.6632 4.6027 23 6 4.2907 -2.0153 -0.9179 24 6 4.2981 -0.4870 -0.9913 25 1 -0.4851 0.8400 0.0004 26 1 4.0391 -0.0995 1.8865 27 1 5.0931 -1.4910 1.5383 28 1 2.5359 -2.5121 2.0462 29 1 5.2508 -0.7346 3.6688 30 1 5.6499 -1.1170 8.3979 31 1 7.8012 0.3645 8.6332 32 1 6.8318 0.2563 4.5446 33 1 2.2651 -3.2426 6.5415 34 1 5.2029 -2.5072 -0.5799 35 1 3.7190 -2.5530 -1.6741 36 1 3.7311 -0.0191 -1.7961 37 1 5.2147 0.0267 -0.7016 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000619527653.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:34:14 Heat of formation + Delta-G solvation = 137.581018 kcal Electronic energy + Delta-G solvation = -21631.161202 eV Core-core repulsion = 18410.491140 eV Total energy + Delta-G solvation = -3220.670062 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 285.128 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -43.41868 -41.73056 -39.24123 -36.83767 -35.62620 -34.26454 -32.80610 -31.66812 -30.31020 -28.22154 -27.29367 -25.72312 -24.36357 -23.30387 -22.29722 -22.03255 -21.04002 -19.92267 -18.89693 -18.16930 -17.04409 -16.98195 -16.81827 -16.64984 -16.03727 -15.76450 -15.45964 -15.14328 -14.94907 -14.91165 -14.77539 -14.55584 -14.30374 -13.99118 -13.08545 -12.95319 -12.54244 -12.16797 -12.02379 -11.84456 -11.72266 -11.45543 -11.28857 -11.05031 -10.60880 -10.44040 -10.37009 -10.26372 -9.63051 -9.10379 -8.31182 -6.39206 -0.38129 0.19622 1.26640 1.29651 1.34114 1.38344 1.47237 2.03991 2.06214 2.34940 2.85892 3.04869 3.12882 3.22506 3.40127 3.61949 3.75556 3.98000 3.99218 4.13839 4.31730 4.37809 4.40689 4.50584 4.53796 4.60438 4.72869 4.90498 5.00991 5.06284 5.13788 5.27568 5.50999 5.58946 5.66004 5.73060 5.99044 6.24557 6.33370 6.58455 6.71248 6.86857 7.20881 7.32237 8.83285 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.018368 B = 0.004697 C = 0.004361 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1524.035796 B = 5960.147950 C = 6419.443673 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.944 5.944 2 C 0.027 3.973 3 Si 0.928 3.072 4 H -0.275 1.275 5 H -0.310 1.310 6 H -0.216 1.216 7 C -0.482 4.482 8 H 0.036 0.964 9 C -0.043 4.043 10 C 0.158 3.842 11 N -0.675 5.675 12 C 0.451 3.549 13 C -0.310 4.310 14 C 0.411 3.589 15 N -0.416 5.416 16 C -0.032 4.032 17 C -0.037 4.037 18 N -0.506 5.506 19 C 0.195 3.805 20 N -0.595 5.595 21 C 0.370 3.630 22 N -0.609 5.609 23 C -0.160 4.160 24 C -0.186 4.186 25 H 0.263 0.737 26 H 0.059 0.941 27 H 0.086 0.914 28 H 0.412 0.588 29 H 0.164 0.836 30 H 0.197 0.803 31 H 0.201 0.799 32 H 0.235 0.765 33 H 0.236 0.764 34 H 0.109 0.891 35 H 0.075 0.925 36 H 0.073 0.927 37 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.436 -2.036 10.889 17.414 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.583 5.583 2 C -0.171 4.171 3 Si 0.754 3.246 4 H -0.201 1.201 5 H -0.238 1.238 6 H -0.138 1.138 7 C -0.519 4.519 8 H 0.055 0.945 9 C -0.044 4.044 10 C 0.034 3.966 11 N -0.301 5.301 12 C 0.204 3.796 13 C -0.342 4.342 14 C 0.178 3.822 15 N -0.099 5.099 16 C -0.161 4.161 17 C -0.181 4.181 18 N -0.223 5.223 19 C -0.086 4.086 20 N -0.319 5.319 21 C 0.080 3.920 22 N -0.335 5.335 23 C -0.197 4.197 24 C -0.223 4.223 25 H 0.072 0.928 26 H 0.077 0.923 27 H 0.104 0.896 28 H 0.249 0.751 29 H 0.182 0.818 30 H 0.214 0.786 31 H 0.218 0.782 32 H 0.251 0.749 33 H 0.252 0.748 34 H 0.127 0.873 35 H 0.094 0.906 36 H 0.091 0.909 37 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges 13.469 -1.823 11.080 17.536 hybrid contribution -1.112 0.550 -0.806 1.479 sum 12.357 -1.272 10.274 16.121 Atomic orbital electron populations 1.70047 1.08479 1.27879 1.51942 1.25767 0.94988 1.02728 0.93620 0.86072 0.81205 0.78907 0.78448 1.20117 1.23802 1.13833 1.20283 0.89184 0.92629 1.49844 0.94540 1.19454 0.92354 1.04352 0.88225 1.21262 0.93155 0.93419 0.88721 1.44832 1.37180 1.46552 1.01568 1.18562 0.87543 0.87061 0.86391 1.21541 1.04790 1.13292 0.94588 1.18126 0.86459 0.89166 0.88440 1.43224 1.20382 1.37552 1.08700 1.23311 1.01067 1.06228 0.85481 1.22882 0.97352 1.00966 0.96882 1.70371 1.26568 1.24053 1.01318 1.25950 0.86770 0.94646 1.01255 1.67852 1.08222 1.15576 1.40287 1.25191 0.89730 0.89445 0.87678 1.68063 1.32292 1.26737 1.06390 1.22968 1.01519 0.92907 1.02343 1.23034 1.01941 0.95695 1.01646 0.92832 0.92330 0.89634 0.75085 0.81850 0.78648 0.78182 0.74869 0.74781 0.87285 0.90612 0.90877 0.87197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -56.15 13.96 21.45 0.30 -55.85 16 2 C 0.03 1.46 5.47 84.65 0.46 1.93 16 3 Si 0.93 40.76 25.19 68.60 1.73 42.49 16 4 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 5 H -0.31 -14.39 7.11 99.48 0.71 -13.68 16 6 H -0.22 -8.00 5.24 99.48 0.52 -7.48 16 7 C -0.48 -24.08 8.09 25.60 0.21 -23.88 16 8 H 0.04 2.08 8.06 -2.91 -0.02 2.06 16 9 C -0.04 -1.61 1.13 -52.93 -0.06 -1.67 16 10 C 0.16 5.05 4.83 86.38 0.42 5.46 16 11 N -0.67 -23.32 5.44 -344.71 -1.88 -25.20 16 12 C 0.45 14.48 7.70 133.05 1.02 15.50 16 13 C -0.31 -8.51 8.78 22.69 0.20 -8.31 16 14 C 0.41 11.16 7.53 132.60 1.00 12.16 16 15 N -0.42 -10.26 2.98 -355.45 -1.06 -11.32 16 16 C -0.03 -0.71 11.21 83.02 0.93 0.22 16 17 C -0.04 -0.80 11.85 83.50 0.99 0.19 16 18 N -0.51 -12.77 11.24 -199.65 -2.24 -15.01 16 19 C 0.20 4.48 11.93 179.97 2.15 6.63 16 20 N -0.59 -15.95 10.02 -197.35 -1.98 -17.93 16 21 C 0.37 9.54 12.28 180.91 2.22 11.77 16 22 N -0.61 -19.37 10.47 -197.77 -2.07 -21.44 16 23 C -0.16 -5.12 9.88 30.60 0.30 -4.82 16 24 C -0.19 -6.15 7.33 30.60 0.22 -5.93 16 25 H 0.26 14.94 8.31 -92.71 -0.77 14.17 16 26 H 0.06 1.90 6.44 -2.39 -0.02 1.88 16 27 H 0.09 2.13 7.82 -2.39 -0.02 2.11 16 28 H 0.41 16.10 7.68 -92.71 -0.71 15.39 16 29 H 0.16 3.66 5.70 -2.91 -0.02 3.65 16 30 H 0.20 3.56 8.06 -2.91 -0.02 3.53 16 31 H 0.20 2.96 8.06 -2.91 -0.02 2.93 16 32 H 0.24 3.82 7.12 -2.91 -0.02 3.80 16 33 H 0.24 4.02 8.06 -2.91 -0.02 3.99 16 34 H 0.11 2.76 8.08 -2.39 -0.02 2.75 16 35 H 0.08 2.61 8.14 -2.39 -0.02 2.59 16 36 H 0.07 2.69 7.13 -2.39 -0.02 2.68 16 37 H 0.11 2.93 8.14 -2.39 -0.02 2.91 16 Total: -1.00 -66.00 313.56 3.08 -62.92 By element: Atomic # 1 Polarization: 31.88 SS G_CDS: 0.21 Total: 32.09 kcal Atomic # 6 Polarization: -0.81 SS G_CDS: 10.07 Total: 9.26 kcal Atomic # 7 Polarization: -137.83 SS G_CDS: -8.93 Total: -146.75 kcal Atomic # 14 Polarization: 40.76 SS G_CDS: 1.73 Total: 42.49 kcal Total: -66.00 3.08 -62.92 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000619527653.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 200.501 kcal (2) G-P(sol) polarization free energy of solvation -65.998 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 134.504 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.077 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.920 kcal (6) G-S(sol) free energy of system = (1) + (5) 137.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds