Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47196 * 240.00466 * 3 2 1 5 5 H 1.48498 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46982 * 120.00613 * 3 2 1 7 7 C 1.37877 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00163 * 185.96819 * 7 2 1 9 9 C 1.50706 * 119.99931 * 5.97156 * 7 2 1 10 10 C 1.52994 * 115.54960 * 279.04687 * 9 7 2 11 11 N 1.46507 * 109.47047 * 294.85609 * 10 9 7 12 12 C 1.39715 * 119.99594 * 179.53878 * 11 10 9 13 13 C 1.39069 * 120.10907 * 359.72560 * 12 11 10 14 14 C 1.38096 * 120.40903 * 179.80036 * 13 12 11 15 15 C 1.38380 * 120.48246 * 0.56959 * 14 13 12 16 16 C 1.39616 * 119.37302 * 359.54764 * 15 14 13 17 17 C 1.38594 * 120.10418 * 179.97438 * 12 11 10 18 18 C 1.47631 * 120.10733 * 180.52525 * 16 15 14 19 19 O 1.21251 * 121.17372 * 168.48131 * 18 16 15 20 20 C 1.51469 * 117.65157 * 348.50153 * 18 16 15 21 21 C 1.53440 * 107.36679 * 42.53461 * 20 18 16 22 22 C 1.50445 * 119.05241 * 179.43326 * 15 14 13 23 23 C 1.53000 * 117.49799 * 133.33840 * 9 7 2 24 24 C 1.52999 * 60.00214 * 252.51167 * 23 9 7 25 25 H 0.96993 * 120.00262 * 354.99489 * 1 2 3 26 26 H 1.09005 * 109.47166 * 54.85276 * 10 9 7 27 27 H 1.08995 * 109.47573 * 174.85590 * 10 9 7 28 28 H 0.96995 * 119.99943 * 359.53872 * 11 10 9 29 29 H 1.07992 * 119.79030 * 0.08705 * 13 12 11 30 30 H 1.08001 * 119.76053 * 180.29157 * 14 13 12 31 31 H 1.08003 * 120.13792 * 359.96667 * 17 12 11 32 32 H 1.08997 * 109.88095 * 283.06693 * 20 18 16 33 33 H 1.08999 * 109.93902 * 162.02761 * 20 18 16 34 34 H 1.09000 * 109.48604 * 176.03028 * 21 20 18 35 35 H 1.08995 * 109.50750 * 55.98062 * 21 20 18 36 36 H 1.09008 * 109.11349 * 277.84742 * 22 15 14 37 37 H 1.08996 * 109.12298 * 36.98335 * 22 15 14 38 38 H 1.09002 * 117.49880 * 0.02562 * 23 9 7 39 39 H 1.09001 * 117.49748 * 145.01630 * 23 9 7 40 40 H 1.09001 * 117.49824 * 252.51671 * 24 23 9 41 41 H 1.08996 * 117.51938 * 107.47825 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0967 9 6 1.2572 -2.4956 -0.1369 10 6 0.6197 -3.0282 1.1479 11 7 1.6710 -3.3699 2.1094 12 6 1.3301 -3.8707 3.3684 13 6 -0.0064 -4.0404 3.7132 14 6 -0.3502 -4.5388 4.9544 15 6 0.6293 -4.8650 5.8758 16 6 1.9728 -4.6947 5.5362 17 6 2.3228 -4.1952 4.2795 18 6 3.0315 -5.0485 6.5025 19 8 4.1947 -5.1069 6.1656 20 6 2.6131 -5.3363 7.9295 21 6 1.3435 -6.1961 7.8700 22 6 0.2182 -5.3934 7.2230 23 6 1.8003 -3.5209 -1.1343 24 6 0.5168 -2.7507 -1.4514 25 1 -0.4850 0.8368 0.0733 26 1 -0.0292 -2.2638 1.5755 27 1 0.0323 -3.9177 0.9204 28 1 2.6035 -3.2484 1.8719 29 1 -0.7800 -3.7851 3.0043 30 1 -1.3913 -4.6707 5.2095 31 1 3.3625 -4.0624 4.0189 32 1 2.4038 -4.4019 8.4501 33 1 3.4043 -5.8793 8.4465 34 1 1.0511 -6.4832 8.8800 35 1 1.5375 -7.0913 7.2793 36 1 -0.0411 -4.5560 7.8709 37 1 -0.6543 -6.0357 7.1036 38 1 2.6983 -3.2542 -1.6915 39 1 1.7036 -4.5752 -0.8751 40 1 -0.4243 -3.2984 -1.4007 41 1 0.5700 -1.9770 -2.2172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000656649723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = -2.336055 kcal Electronic energy + Delta-G solvation = -21776.687624 eV Core-core repulsion = 18621.197894 eV Total energy + Delta-G solvation = -3155.489729 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.24597 -38.32984 -37.07374 -35.79751 -33.46824 -32.04198 -31.02387 -29.35938 -27.85226 -25.76705 -24.87869 -23.19157 -22.21893 -21.30969 -21.15082 -19.32716 -18.67072 -16.89731 -16.48428 -16.00825 -15.42599 -14.90376 -14.75326 -14.65166 -14.39727 -14.16838 -13.80495 -13.58896 -13.25766 -13.03840 -12.91156 -12.66539 -12.48415 -11.70666 -11.61534 -11.45485 -11.23371 -11.08394 -11.02004 -10.95051 -10.72271 -10.57205 -10.32451 -9.64210 -9.51429 -9.45367 -8.90731 -8.69241 -8.56038 -8.26280 -6.77444 -6.13218 -4.20823 0.96002 1.83740 2.64541 3.25309 3.30360 3.33204 3.94164 4.12217 4.26622 4.33742 4.67218 4.70462 4.84910 5.11862 5.15505 5.22793 5.27264 5.36104 5.48639 5.52797 5.63302 5.68811 5.75221 5.89955 5.96584 6.02461 6.12674 6.17551 6.25745 6.35397 6.46924 6.56952 6.63369 6.69406 6.74183 6.77534 6.99237 7.13815 7.33187 7.39545 7.60944 7.77491 8.00274 8.29249 8.44101 8.79723 9.46186 10.94812 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.003915 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.343392 B = 7149.920852 C = 7449.099176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.878 5.878 2 C 0.075 3.925 3 Si 0.890 3.110 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.499 4.499 8 H 0.059 0.941 9 C 0.032 3.968 10 C 0.164 3.836 11 N -0.717 5.717 12 C 0.221 3.779 13 C -0.170 4.170 14 C -0.082 4.082 15 C -0.117 4.117 16 C -0.122 4.122 17 C -0.151 4.151 18 C 0.400 3.600 19 O -0.460 6.460 20 C -0.163 4.163 21 C -0.112 4.112 22 C -0.074 4.074 23 C -0.209 4.209 24 C -0.153 4.153 25 H 0.262 0.738 26 H 0.071 0.929 27 H 0.029 0.971 28 H 0.402 0.598 29 H 0.125 0.875 30 H 0.120 0.880 31 H 0.126 0.874 32 H 0.100 0.900 33 H 0.089 0.911 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.078 0.922 39 H 0.066 0.934 40 H 0.064 0.936 41 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.790 -10.226 12.999 16.636 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.129 4.129 3 Si 0.718 3.282 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.537 4.537 8 H 0.077 0.923 9 C 0.031 3.969 10 C 0.041 3.959 11 N -0.341 5.341 12 C 0.113 3.887 13 C -0.194 4.194 14 C -0.101 4.101 15 C -0.120 4.120 16 C -0.124 4.124 17 C -0.174 4.174 18 C 0.278 3.722 19 O -0.335 6.335 20 C -0.201 4.201 21 C -0.150 4.150 22 C -0.111 4.111 23 C -0.246 4.246 24 C -0.191 4.191 25 H 0.072 0.928 26 H 0.089 0.911 27 H 0.047 0.953 28 H 0.237 0.763 29 H 0.143 0.857 30 H 0.138 0.862 31 H 0.144 0.856 32 H 0.118 0.882 33 H 0.107 0.893 34 H 0.093 0.907 35 H 0.086 0.914 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.096 0.904 39 H 0.084 0.916 40 H 0.083 0.917 41 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges -1.518 -10.053 12.566 16.164 hybrid contribution 0.594 1.148 -0.242 1.315 sum -0.925 -8.905 12.324 15.233 Atomic orbital electron populations 1.69937 1.05878 1.27068 1.48497 1.24950 0.94814 0.98909 0.94188 0.86688 0.79704 0.83084 0.78740 1.20161 1.21219 1.20211 1.20322 0.92781 0.88619 1.51928 0.92297 1.18967 0.98102 0.93693 0.86139 1.21009 0.89001 0.96371 0.89538 1.44954 1.10021 1.67672 1.11409 1.17892 0.92985 0.91622 0.86216 1.20857 0.94764 1.05645 0.98108 1.20723 0.98490 0.98060 0.92797 1.19549 0.91810 1.04403 0.96215 1.19817 0.93605 1.03884 0.95054 1.20746 0.98866 1.04945 0.92883 1.22824 0.87630 0.71471 0.90259 1.90509 1.21183 1.40138 1.81701 1.22294 0.99718 1.02456 0.95636 1.21480 0.93678 0.98378 1.01417 1.20282 0.98083 0.99401 0.93287 1.22983 0.98090 0.95694 1.07879 1.22533 0.92941 1.01475 1.02182 0.92803 0.91129 0.95316 0.76325 0.85667 0.86156 0.85581 0.88162 0.89272 0.90686 0.91377 0.90788 0.90765 0.90378 0.91566 0.91697 0.89924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.77 13.09 55.43 0.73 -23.05 16 2 C 0.08 1.98 5.42 -17.82 -0.10 1.88 16 3 Si 0.89 20.66 29.55 -169.99 -5.02 15.64 16 4 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 5 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 6 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 7 C -0.50 -12.84 8.64 -34.44 -0.30 -13.14 16 8 H 0.06 1.52 7.82 -52.49 -0.41 1.11 16 9 C 0.03 0.73 1.30 -155.66 -0.20 0.53 16 10 C 0.16 3.47 4.74 -4.04 -0.02 3.46 16 11 N -0.72 -13.86 5.65 -58.66 -0.33 -14.19 16 12 C 0.22 3.93 6.65 -83.83 -0.56 3.37 16 13 C -0.17 -2.76 9.30 -39.33 -0.37 -3.12 16 14 C -0.08 -1.11 9.64 -39.58 -0.38 -1.49 16 15 C -0.12 -1.52 5.78 -104.18 -0.60 -2.12 16 16 C -0.12 -1.84 5.82 -105.01 -0.61 -2.45 16 17 C -0.15 -2.57 9.45 -38.91 -0.37 -2.93 16 18 C 0.40 5.67 6.89 -30.10 -0.21 5.46 16 19 O -0.46 -7.95 17.26 5.58 0.10 -7.85 16 20 C -0.16 -1.58 6.19 -27.28 -0.17 -1.75 16 21 C -0.11 -0.92 5.90 -26.70 -0.16 -1.08 16 22 C -0.07 -0.67 5.70 -28.20 -0.16 -0.83 16 23 C -0.21 -4.32 9.96 -26.73 -0.27 -4.59 16 24 C -0.15 -3.40 9.66 -26.73 -0.26 -3.65 16 25 H 0.26 6.87 8.32 -40.82 -0.34 6.53 16 26 H 0.07 1.67 7.92 -51.93 -0.41 1.26 16 27 H 0.03 0.57 7.93 -51.93 -0.41 0.16 16 28 H 0.40 7.79 8.41 -40.82 -0.34 7.45 16 29 H 0.13 2.03 6.72 -52.49 -0.35 1.68 16 30 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 31 H 0.13 2.18 7.71 -52.48 -0.40 1.77 16 32 H 0.10 0.84 8.14 -51.93 -0.42 0.42 16 33 H 0.09 0.78 8.14 -51.93 -0.42 0.35 16 34 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.07 0.60 8.14 -51.92 -0.42 0.18 16 37 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 38 H 0.08 1.61 8.14 -51.93 -0.42 1.18 16 39 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 40 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 41 H 0.08 1.95 8.14 -51.93 -0.42 1.53 16 LS Contribution 342.15 15.07 5.16 5.16 Total: -1.00 -28.19 342.15 -10.21 -38.40 By element: Atomic # 1 Polarization: 14.47 SS G_CDS: -6.12 Total: 8.36 kcal Atomic # 6 Polarization: -17.75 SS G_CDS: -4.72 Total: -22.47 kcal Atomic # 7 Polarization: -37.63 SS G_CDS: 0.39 Total: -37.24 kcal Atomic # 8 Polarization: -7.95 SS G_CDS: 0.10 Total: -7.85 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -28.19 -10.21 -38.40 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656649723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.068 kcal (2) G-P(sol) polarization free energy of solvation -28.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.213 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.404 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.336 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds