Wall clock time and date at job start Tue Mar 31 2020 06:21:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86803 * 119.99800 * 2 1 4 4 H 1.48498 * 109.47196 * 240.00466 * 3 2 1 5 5 H 1.48498 * 109.47068 * 0.02562 * 3 2 1 6 6 H 1.48495 * 109.46982 * 120.00613 * 3 2 1 7 7 C 1.37877 * 120.00170 * 180.02562 * 2 1 3 8 8 H 1.07996 * 120.00163 * 185.96819 * 7 2 1 9 9 C 1.50706 * 119.99931 * 5.97156 * 7 2 1 10 10 C 1.52994 * 115.54960 * 279.04687 * 9 7 2 11 11 N 1.46507 * 109.47047 * 294.85609 * 10 9 7 12 12 C 1.39715 * 119.99594 * 179.53878 * 11 10 9 13 13 C 1.39069 * 120.10907 * 359.72560 * 12 11 10 14 14 C 1.38096 * 120.40903 * 179.80036 * 13 12 11 15 15 C 1.38380 * 120.48246 * 0.56959 * 14 13 12 16 16 C 1.39616 * 119.37302 * 359.54764 * 15 14 13 17 17 C 1.38594 * 120.10418 * 179.97438 * 12 11 10 18 18 C 1.47631 * 120.10733 * 180.52525 * 16 15 14 19 19 O 1.21251 * 121.17372 * 168.48131 * 18 16 15 20 20 C 1.51469 * 117.65157 * 348.50153 * 18 16 15 21 21 C 1.53440 * 107.36679 * 42.53461 * 20 18 16 22 22 C 1.50445 * 119.05241 * 179.43326 * 15 14 13 23 23 C 1.53000 * 117.49799 * 133.33840 * 9 7 2 24 24 C 1.52999 * 60.00214 * 252.51167 * 23 9 7 25 25 H 0.96993 * 120.00262 * 354.99489 * 1 2 3 26 26 H 1.09005 * 109.47166 * 54.85276 * 10 9 7 27 27 H 1.08995 * 109.47573 * 174.85590 * 10 9 7 28 28 H 0.96995 * 119.99943 * 359.53872 * 11 10 9 29 29 H 1.07992 * 119.79030 * 0.08705 * 13 12 11 30 30 H 1.08001 * 119.76053 * 180.29157 * 14 13 12 31 31 H 1.08003 * 120.13792 * 359.96667 * 17 12 11 32 32 H 1.08997 * 109.88095 * 283.06693 * 20 18 16 33 33 H 1.08999 * 109.93902 * 162.02761 * 20 18 16 34 34 H 1.09000 * 109.48604 * 176.03028 * 21 20 18 35 35 H 1.08995 * 109.50750 * 55.98062 * 21 20 18 36 36 H 1.09008 * 109.11349 * 277.84742 * 22 15 14 37 37 H 1.08996 * 109.12298 * 36.98335 * 22 15 14 38 38 H 1.09002 * 117.49880 * 0.02562 * 23 9 7 39 39 H 1.09001 * 117.49748 * 145.01630 * 23 9 7 40 40 H 1.09001 * 117.49824 * 252.51671 * 24 23 9 41 41 H 1.08996 * 117.51938 * 107.47825 * 24 23 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6965 -1.2125 5 1 1.2841 2.7465 0.0006 6 1 3.1029 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0801 -1.1966 0.0967 9 6 1.2572 -2.4956 -0.1369 10 6 0.6197 -3.0282 1.1479 11 7 1.6710 -3.3699 2.1094 12 6 1.3301 -3.8707 3.3684 13 6 -0.0064 -4.0404 3.7132 14 6 -0.3502 -4.5388 4.9544 15 6 0.6293 -4.8650 5.8758 16 6 1.9728 -4.6947 5.5362 17 6 2.3228 -4.1952 4.2795 18 6 3.0315 -5.0485 6.5025 19 8 4.1947 -5.1069 6.1656 20 6 2.6131 -5.3363 7.9295 21 6 1.3435 -6.1961 7.8700 22 6 0.2182 -5.3934 7.2230 23 6 1.8003 -3.5209 -1.1343 24 6 0.5168 -2.7507 -1.4514 25 1 -0.4850 0.8368 0.0733 26 1 -0.0292 -2.2638 1.5755 27 1 0.0323 -3.9177 0.9204 28 1 2.6035 -3.2484 1.8719 29 1 -0.7800 -3.7851 3.0043 30 1 -1.3913 -4.6707 5.2095 31 1 3.3625 -4.0624 4.0189 32 1 2.4038 -4.4019 8.4501 33 1 3.4043 -5.8793 8.4465 34 1 1.0511 -6.4832 8.8800 35 1 1.5375 -7.0913 7.2793 36 1 -0.0411 -4.5560 7.8709 37 1 -0.6543 -6.0357 7.1036 38 1 2.6983 -3.2542 -1.6915 39 1 1.7036 -4.5752 -0.8751 40 1 -0.4243 -3.2984 -1.4007 41 1 0.5700 -1.9770 -2.2172 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000656649723.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:15 Heat of formation + Delta-G solvation = -16.380089 kcal Electronic energy + Delta-G solvation = -21777.296619 eV Core-core repulsion = 18621.197894 eV Total energy + Delta-G solvation = -3156.098724 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.36413 -39.64266 -38.62530 -36.94802 -34.69018 -34.02336 -32.20865 -30.46886 -28.98797 -27.63714 -26.37014 -24.35045 -23.28148 -22.86739 -22.34435 -21.11055 -19.75375 -18.35557 -17.97281 -17.26434 -16.70674 -16.55837 -16.07803 -15.89514 -15.78192 -15.43992 -15.14534 -14.81522 -14.43200 -14.38034 -14.21228 -13.89551 -13.60022 -13.37961 -13.08773 -12.92680 -12.80064 -12.51565 -12.40587 -12.10452 -12.04050 -11.92294 -11.64743 -11.44366 -10.96652 -10.61920 -10.54097 -10.47222 -10.05557 -9.90806 -8.17727 -8.10753 -6.25514 -0.22562 0.65444 1.38312 1.39703 1.45927 1.50206 2.38261 2.59935 2.93019 3.13543 3.16862 3.51534 3.84589 3.87853 4.02195 4.16466 4.20767 4.26040 4.36322 4.49899 4.51848 4.62465 4.66183 4.70006 4.75103 4.86639 4.93134 4.95160 5.01728 5.07095 5.11456 5.22220 5.24050 5.38654 5.42524 5.47190 5.57912 5.58945 5.63261 5.74661 5.97652 6.33299 6.52764 6.57014 6.78001 6.96263 7.42868 8.92994 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.020715 B = 0.003915 C = 0.003758 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1351.343392 B = 7149.920852 C = 7449.099176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.901 5.901 2 C 0.033 3.967 3 Si 0.943 3.057 4 H -0.273 1.273 5 H -0.284 1.284 6 H -0.278 1.278 7 C -0.509 4.509 8 H 0.049 0.951 9 C 0.008 3.992 10 C 0.186 3.814 11 N -0.729 5.729 12 C 0.195 3.805 13 C -0.180 4.180 14 C -0.080 4.080 15 C -0.096 4.096 16 C -0.140 4.140 17 C -0.169 4.169 18 C 0.395 3.605 19 O -0.503 6.503 20 C -0.156 4.156 21 C -0.107 4.107 22 C -0.075 4.075 23 C -0.185 4.185 24 C -0.157 4.157 25 H 0.261 0.739 26 H 0.038 0.962 27 H 0.040 0.960 28 H 0.396 0.604 29 H 0.120 0.880 30 H 0.157 0.843 31 H 0.109 0.891 32 H 0.120 0.880 33 H 0.101 0.899 34 H 0.111 0.889 35 H 0.061 0.939 36 H 0.096 0.904 37 H 0.099 0.901 38 H 0.077 0.923 39 H 0.088 0.912 40 H 0.079 0.921 41 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.960 -11.578 15.649 19.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.539 5.539 2 C -0.168 4.168 3 Si 0.769 3.231 4 H -0.198 1.198 5 H -0.209 1.209 6 H -0.204 1.204 7 C -0.547 4.547 8 H 0.067 0.933 9 C 0.007 3.993 10 C 0.061 3.939 11 N -0.354 5.354 12 C 0.090 3.910 13 C -0.203 4.203 14 C -0.098 4.098 15 C -0.099 4.099 16 C -0.142 4.142 17 C -0.193 4.193 18 C 0.276 3.724 19 O -0.381 6.381 20 C -0.193 4.193 21 C -0.145 4.145 22 C -0.112 4.112 23 C -0.222 4.222 24 C -0.195 4.195 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.058 0.942 28 H 0.230 0.770 29 H 0.138 0.862 30 H 0.175 0.825 31 H 0.127 0.873 32 H 0.138 0.862 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.114 0.886 37 H 0.117 0.883 38 H 0.096 0.904 39 H 0.106 0.894 40 H 0.097 0.903 41 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges -2.702 -11.424 15.247 19.243 hybrid contribution 0.943 1.506 -0.971 2.025 sum -1.759 -9.918 14.276 17.472 Atomic orbital electron populations 1.70029 1.06787 1.27417 1.49633 1.25550 0.95516 1.01483 0.94288 0.85856 0.78609 0.80076 0.78516 1.19836 1.20906 1.20378 1.20571 0.92592 0.90185 1.51309 0.93255 1.19047 0.99162 0.93797 0.87309 1.20585 0.88859 0.95611 0.88818 1.44779 1.09123 1.69358 1.12131 1.18071 0.93992 0.93112 0.85857 1.21041 0.93851 1.05960 0.99437 1.21146 1.00529 0.96608 0.91509 1.20109 0.90463 1.01421 0.97907 1.20187 0.95398 1.03986 0.94625 1.20757 0.98029 1.06352 0.94158 1.23529 0.86633 0.69930 0.92260 1.90494 1.22733 1.42154 1.82766 1.22360 1.01013 1.03938 0.92003 1.21527 0.92201 0.97428 1.03327 1.20465 0.99242 1.00673 0.90828 1.22953 0.97173 0.96278 1.05841 1.22475 0.94334 1.01551 1.01141 0.93016 0.94352 0.94239 0.76960 0.86189 0.82541 0.87294 0.86172 0.88069 0.87051 0.92033 0.88601 0.88273 0.90433 0.89406 0.90286 0.91962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -49.96 13.09 21.45 0.28 -49.68 16 2 C 0.03 1.76 5.42 84.65 0.46 2.22 16 3 Si 0.94 43.20 29.55 68.60 2.03 45.23 16 4 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 5 H -0.28 -12.76 7.11 99.48 0.71 -12.06 16 6 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 7 C -0.51 -26.91 8.64 25.60 0.22 -26.69 16 8 H 0.05 2.63 7.82 -2.91 -0.02 2.61 16 9 C 0.01 0.35 1.30 -52.93 -0.07 0.28 16 10 C 0.19 8.08 4.74 86.38 0.41 8.49 16 11 N -0.73 -29.44 5.65 -339.51 -1.92 -31.36 16 12 C 0.20 7.17 6.65 38.17 0.25 7.42 16 13 C -0.18 -5.78 9.30 22.44 0.21 -5.57 16 14 C -0.08 -1.95 9.64 22.27 0.21 -1.74 16 15 C -0.10 -2.23 5.78 -19.58 -0.11 -2.34 16 16 C -0.14 -4.14 5.82 -20.11 -0.12 -4.26 16 17 C -0.17 -6.00 9.45 22.71 0.21 -5.79 16 18 C 0.40 10.87 6.89 28.41 0.20 11.06 16 19 O -0.50 -17.75 17.26 -2.94 -0.05 -17.80 16 20 C -0.16 -2.50 6.19 30.24 0.19 -2.31 16 21 C -0.11 -1.25 5.90 30.61 0.18 -1.07 16 22 C -0.08 -0.99 5.70 29.64 0.17 -0.82 16 23 C -0.19 -7.62 9.96 30.59 0.30 -7.31 16 24 C -0.16 -7.02 9.66 30.60 0.30 -6.72 16 25 H 0.26 13.95 8.32 -92.71 -0.77 13.18 16 26 H 0.04 1.89 7.92 -2.38 -0.02 1.87 16 27 H 0.04 1.59 7.93 -2.39 -0.02 1.57 16 28 H 0.40 16.32 8.41 -92.71 -0.78 15.54 16 29 H 0.12 3.92 6.72 -2.91 -0.02 3.90 16 30 H 0.16 2.70 8.06 -2.91 -0.02 2.67 16 31 H 0.11 4.10 7.71 -2.91 -0.02 4.08 16 32 H 0.12 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.10 1.43 8.14 -2.39 -0.02 1.41 16 34 H 0.11 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 36 H 0.10 0.98 8.14 -2.38 -0.02 0.96 16 37 H 0.10 0.93 8.10 -2.39 -0.02 0.91 16 38 H 0.08 3.18 8.14 -2.39 -0.02 3.16 16 39 H 0.09 3.23 8.14 -2.39 -0.02 3.21 16 40 H 0.08 3.26 8.14 -2.39 -0.02 3.24 16 41 H 0.06 3.01 8.14 -2.39 -0.02 2.99 16 Total: -1.00 -63.77 342.15 3.60 -60.17 By element: Atomic # 1 Polarization: 28.32 SS G_CDS: 0.25 Total: 28.57 kcal Atomic # 6 Polarization: -38.15 SS G_CDS: 3.01 Total: -35.13 kcal Atomic # 7 Polarization: -79.40 SS G_CDS: -1.64 Total: -81.04 kcal Atomic # 8 Polarization: -17.75 SS G_CDS: -0.05 Total: -17.80 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 2.03 Total: 45.23 kcal Total: -63.77 3.60 -60.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656649723.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.785 kcal (2) G-P(sol) polarization free energy of solvation -63.769 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.603 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.165 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.380 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds