Wall clock time and date at job start Tue Mar 31 2020 06:21:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86800 * 119.99553 * 2 1 4 4 H 1.48496 * 109.47176 * 269.99938 * 3 2 1 5 5 H 1.48502 * 109.47197 * 29.99964 * 3 2 1 6 6 H 1.48505 * 109.46825 * 149.99718 * 3 2 1 7 7 C 1.37874 * 120.00358 * 179.97438 * 2 1 3 8 8 H 1.07998 * 120.00291 * 173.35740 * 7 2 1 9 9 C 1.50701 * 119.99781 * 353.35514 * 7 2 1 10 10 C 1.53005 * 115.54941 * 85.34606 * 9 7 2 11 11 N 1.46497 * 109.47466 * 65.11963 * 10 9 7 12 12 C 1.38886 * 120.00318 * 180.73354 * 11 10 9 13 13 C 1.39334 * 119.84116 * 0.02562 * 12 11 10 14 14 C 1.36544 * 119.87988 * 180.09264 * 13 12 11 15 15 C 1.40069 * 119.87953 * 0.02562 * 14 13 12 16 16 C 1.39861 * 120.27547 * 359.81952 * 15 14 13 17 17 C 1.36970 * 119.33801 * 359.97438 * 16 15 14 18 18 C 1.50431 * 121.60094 * 180.27788 * 16 15 14 19 19 C 1.52626 * 111.24185 * 337.55542 * 18 16 15 20 20 C 1.53436 * 109.35619 * 54.48078 * 19 18 16 21 21 C 1.47199 * 119.63019 * 179.72356 * 15 14 13 22 22 O 1.21310 * 121.15651 * 348.67221 * 21 15 14 23 23 C 1.53001 * 117.49897 * 231.00930 * 9 7 2 24 24 C 1.53002 * 117.50275 * 299.67045 * 9 7 2 25 25 H 0.96992 * 120.00340 * 5.06611 * 1 2 3 26 26 H 1.08999 * 109.46849 * 305.11559 * 10 9 7 27 27 H 1.08998 * 109.46980 * 185.12299 * 10 9 7 28 28 H 0.97002 * 120.00062 * 0.73486 * 11 10 9 29 29 H 1.08003 * 120.06129 * 0.11852 * 13 12 11 30 30 H 1.08002 * 120.06337 * 179.97438 * 14 13 12 31 31 H 1.07999 * 119.84107 * 180.09971 * 17 16 15 32 32 H 1.09002 * 109.13130 * 98.01235 * 18 16 15 33 33 H 1.09002 * 109.12399 * 217.16319 * 18 16 15 34 34 H 1.08998 * 109.49412 * 174.44954 * 19 18 16 35 35 H 1.09006 * 109.49138 * 294.49699 * 19 18 16 36 36 H 1.09005 * 109.86915 * 55.44135 * 20 19 18 37 37 H 1.09001 * 109.87221 * 176.48908 * 20 19 18 38 38 H 1.09000 * 117.50156 * 215.00531 * 23 9 7 39 39 H 1.09005 * 117.49813 * 0.02562 * 23 9 7 40 40 H 1.09001 * 117.49346 * 359.97438 * 24 9 7 41 41 H 1.08996 * 117.50095 * 144.97504 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2490 1.6178 0.0000 4 1 2.4965 2.0465 -1.4000 5 1 1.4464 2.6527 0.7000 6 1 3.5466 1.4403 0.7001 7 6 2.0046 -1.1940 0.0005 8 1 3.0792 -1.1972 -0.1077 9 6 1.2587 -2.4947 0.1521 10 6 0.6976 -3.0882 -1.1416 11 7 1.8031 -3.4620 -2.0272 12 6 1.5381 -4.0116 -3.2749 13 6 0.2195 -4.2054 -3.6812 14 6 -0.0419 -4.7474 -4.9070 15 6 1.0164 -5.1069 -5.7511 16 6 2.3403 -4.9097 -5.3452 17 6 2.5905 -4.3613 -4.1153 18 6 3.4994 -5.2791 -6.2301 19 6 3.0950 -6.3289 -7.2616 20 6 1.8767 -5.8267 -8.0476 21 6 0.7284 -5.6964 -7.0688 22 8 -0.3898 -6.0653 -7.3604 23 6 1.7518 -3.4713 1.2217 24 6 0.4474 -2.6987 1.4332 25 1 -0.4850 0.8367 -0.0742 26 1 0.0687 -2.3490 -1.6376 27 1 0.1041 -3.9722 -0.9083 28 1 2.7202 -3.3258 -1.7422 29 1 -0.5944 -3.9271 -3.0281 30 1 -1.0629 -4.8993 -5.2248 31 1 3.6097 -4.2039 -3.7944 32 1 3.8521 -4.3871 -6.7478 33 1 4.3061 -5.6769 -5.6144 34 1 3.9239 -6.5030 -7.9476 35 1 2.8419 -7.2595 -6.7534 36 1 2.0969 -4.8559 -8.4918 37 1 1.6188 -6.5423 -8.8283 38 1 1.6764 -4.5366 1.0038 39 1 2.6155 -3.1728 1.8161 40 1 0.4534 -1.8922 2.1665 41 1 -0.4864 -3.2554 1.3542 RHF calculation, no. of doubly occupied orbitals= 53 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000656653509.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:21:12 Heat of formation + Delta-G solvation = -18.193308 kcal Electronic energy + Delta-G solvation = -21736.297846 eV Core-core repulsion = 18580.120495 eV Total energy + Delta-G solvation = -3156.177352 eV No. of doubly occupied orbitals = 53 Molecular weight (most abundant/longest-lived isotopes) = 285.147 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.36106 -39.69455 -38.59613 -36.87417 -35.00031 -34.00033 -32.27409 -30.25830 -29.03429 -27.70998 -26.60123 -24.20080 -23.33386 -22.86477 -22.19803 -21.08316 -19.81972 -18.36235 -17.86266 -17.39552 -16.99826 -16.64012 -15.96292 -15.88321 -15.51686 -15.37590 -15.14088 -14.85305 -14.42185 -14.25821 -14.16530 -13.91228 -13.67132 -13.44711 -13.06284 -12.91239 -12.82279 -12.76473 -12.37063 -12.07843 -11.94288 -11.86687 -11.65091 -11.45359 -11.08047 -10.70482 -10.47493 -10.44304 -10.06260 -9.73252 -8.30317 -8.12699 -6.25115 -0.02385 0.55535 1.39230 1.42856 1.50204 1.59221 2.39378 2.55501 2.94389 3.15891 3.30102 3.50581 3.74907 3.89349 4.03851 4.15789 4.20298 4.28791 4.36746 4.52344 4.55111 4.60631 4.62006 4.68283 4.73057 4.85628 4.95198 4.96003 4.98322 5.05234 5.16282 5.20097 5.24352 5.34357 5.41570 5.52225 5.58107 5.60340 5.62051 5.74894 5.93201 6.32532 6.45041 6.69058 6.80164 6.92954 7.44277 8.94188 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.022030 B = 0.003749 C = 0.003630 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1270.702061 B = 7467.849939 C = 7712.383258 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.906 5.906 2 C 0.029 3.971 3 Si 0.945 3.055 4 H -0.280 1.280 5 H -0.289 1.289 6 H -0.266 1.266 7 C -0.505 4.505 8 H 0.058 0.942 9 C 0.007 3.993 10 C 0.177 3.823 11 N -0.705 5.705 12 C 0.255 3.745 13 C -0.240 4.240 14 C -0.017 4.017 15 C -0.273 4.273 16 C 0.030 3.970 17 C -0.228 4.228 18 C -0.088 4.088 19 C -0.105 4.105 20 C -0.158 4.158 21 C 0.401 3.599 22 O -0.520 6.520 23 C -0.180 4.180 24 C -0.158 4.158 25 H 0.259 0.741 26 H 0.036 0.964 27 H 0.041 0.959 28 H 0.406 0.594 29 H 0.113 0.887 30 H 0.119 0.881 31 H 0.145 0.855 32 H 0.103 0.897 33 H 0.101 0.899 34 H 0.110 0.890 35 H 0.062 0.938 36 H 0.117 0.883 37 H 0.098 0.902 38 H 0.089 0.911 39 H 0.081 0.919 40 H 0.061 0.939 41 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.684 -10.528 -11.688 17.969 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.543 5.543 2 C -0.172 4.172 3 Si 0.771 3.229 4 H -0.206 1.206 5 H -0.215 1.215 6 H -0.191 1.191 7 C -0.543 4.543 8 H 0.076 0.924 9 C 0.006 3.994 10 C 0.053 3.947 11 N -0.327 5.327 12 C 0.144 3.856 13 C -0.263 4.263 14 C -0.037 4.037 15 C -0.276 4.276 16 C 0.029 3.971 17 C -0.251 4.251 18 C -0.124 4.124 19 C -0.143 4.143 20 C -0.195 4.195 21 C 0.285 3.715 22 O -0.400 6.400 23 C -0.217 4.217 24 C -0.197 4.197 25 H 0.068 0.932 26 H 0.054 0.946 27 H 0.059 0.941 28 H 0.242 0.758 29 H 0.131 0.869 30 H 0.137 0.863 31 H 0.163 0.837 32 H 0.121 0.879 33 H 0.119 0.881 34 H 0.129 0.871 35 H 0.080 0.920 36 H 0.135 0.865 37 H 0.117 0.883 38 H 0.107 0.893 39 H 0.100 0.900 40 H 0.080 0.920 41 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 7.801 -10.513 -11.578 17.477 hybrid contribution -0.166 1.464 0.698 1.630 sum 7.635 -9.050 -10.881 16.081 Atomic orbital electron populations 1.70066 1.07072 1.27333 1.49828 1.25617 0.95437 1.01783 0.94361 0.85756 0.78988 0.80133 0.77981 1.20590 1.21458 1.19078 1.20621 0.92979 0.89825 1.50859 0.92407 1.19041 0.99501 0.94250 0.86575 1.20704 0.88009 0.95522 0.90485 1.44767 1.09735 1.64117 1.14034 1.18407 0.94051 0.87885 0.85272 1.20421 0.95370 1.11276 0.99192 1.20859 0.98981 0.91879 0.91951 1.20069 0.93973 1.14798 0.98795 1.19818 0.93564 0.90481 0.93236 1.20477 0.98343 1.10497 0.95745 1.20653 0.94484 1.00712 0.96597 1.21499 0.97192 0.97973 0.97611 1.22335 0.94274 1.05214 0.97718 1.23107 0.89058 0.71728 0.87625 1.90481 1.27353 1.42600 1.79610 1.23002 0.97364 0.96356 1.05025 1.22437 0.93794 1.01286 1.02140 0.93179 0.94595 0.94085 0.75794 0.86853 0.86278 0.83736 0.87889 0.88069 0.87120 0.91951 0.86514 0.88349 0.89261 0.90031 0.92046 0.90771 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.91 -49.73 12.92 21.45 0.28 -49.45 16 2 C 0.03 1.50 5.39 84.65 0.46 1.96 16 3 Si 0.94 41.62 29.55 68.60 2.03 43.65 16 4 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 5 H -0.29 -12.78 7.11 99.48 0.71 -12.07 16 6 H -0.27 -11.32 7.11 99.48 0.71 -10.62 16 7 C -0.51 -25.26 8.66 25.60 0.22 -25.03 16 8 H 0.06 2.84 7.82 -2.91 -0.02 2.82 16 9 C 0.01 0.31 1.37 -52.92 -0.07 0.24 16 10 C 0.18 7.39 4.72 86.38 0.41 7.80 16 11 N -0.70 -25.29 5.61 -339.53 -1.91 -27.20 16 12 C 0.25 8.50 6.65 38.51 0.26 8.76 16 13 C -0.24 -8.36 9.24 22.14 0.20 -8.15 16 14 C -0.02 -0.58 9.55 22.32 0.21 -0.36 16 15 C -0.27 -7.92 5.82 -20.09 -0.12 -8.03 16 16 C 0.03 0.73 5.75 -19.85 -0.11 0.62 16 17 C -0.23 -6.15 9.43 22.19 0.21 -5.94 16 18 C -0.09 -1.27 5.69 29.64 0.17 -1.10 16 19 C -0.11 -1.30 5.90 30.62 0.18 -1.12 16 20 C -0.16 -2.61 6.18 30.23 0.19 -2.43 16 21 C 0.40 10.94 6.88 28.28 0.19 11.13 16 22 O -0.52 -17.96 17.25 -3.12 -0.05 -18.01 16 23 C -0.18 -6.95 9.96 30.62 0.30 -6.65 16 24 C -0.16 -6.94 9.43 30.62 0.29 -6.65 16 25 H 0.26 13.80 8.32 -92.71 -0.77 13.03 16 26 H 0.04 1.74 7.89 -2.39 -0.02 1.72 16 27 H 0.04 1.62 7.92 -2.39 -0.02 1.60 16 28 H 0.41 13.83 8.39 -92.71 -0.78 13.05 16 29 H 0.11 4.13 6.69 -2.91 -0.02 4.11 16 30 H 0.12 3.91 7.70 -2.91 -0.02 3.89 16 31 H 0.14 3.20 8.06 -2.91 -0.02 3.18 16 32 H 0.10 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.10 1.13 8.10 -2.39 -0.02 1.11 16 34 H 0.11 0.70 8.14 -2.39 -0.02 0.69 16 35 H 0.06 0.88 8.14 -2.38 -0.02 0.86 16 36 H 0.12 1.54 8.14 -2.38 -0.02 1.53 16 37 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 38 H 0.09 3.04 8.14 -2.39 -0.02 3.02 16 39 H 0.08 3.10 8.14 -2.38 -0.02 3.08 16 40 H 0.06 2.94 8.14 -2.39 -0.02 2.92 16 41 H 0.07 3.06 8.14 -2.39 -0.02 3.04 16 Total: -1.00 -61.53 341.41 3.58 -57.95 By element: Atomic # 1 Polarization: 27.78 SS G_CDS: 0.25 Total: 28.03 kcal Atomic # 6 Polarization: -37.95 SS G_CDS: 2.99 Total: -34.97 kcal Atomic # 7 Polarization: -75.02 SS G_CDS: -1.63 Total: -76.64 kcal Atomic # 8 Polarization: -17.96 SS G_CDS: -0.05 Total: -18.01 kcal Atomic # 14 Polarization: 41.62 SS G_CDS: 2.03 Total: 43.65 kcal Total: -61.53 3.58 -57.95 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000656653509.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.754 kcal (2) G-P(sol) polarization free energy of solvation -61.531 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.778 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.947 kcal (6) G-S(sol) free energy of system = (1) + (5) -18.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds