Wall clock time and date at job start Tue Mar 31 2020 05:44:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47016 * 2 1 4 4 C 1.52996 * 109.46768 * 119.99883 * 2 1 3 5 5 N 1.46895 * 109.47177 * 177.14099 * 4 2 1 6 6 C 1.46899 * 111.00470 * 291.29218 * 5 4 2 7 7 C 1.50702 * 109.47646 * 160.49861 * 6 5 4 8 8 H 1.07996 * 119.99482 * 4.91389 * 7 6 5 9 9 C 1.37869 * 119.99929 * 184.92353 * 7 6 5 10 10 N 1.31514 * 120.00171 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00242 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47032 * 90.00299 * 11 9 7 13 13 H 1.48500 * 109.47307 * 210.00102 * 11 9 7 14 14 H 1.48495 * 109.47165 * 330.00277 * 11 9 7 15 15 C 1.46902 * 111.00414 * 167.33129 * 5 4 2 16 16 C 1.50699 * 109.47257 * 293.95968 * 15 5 4 17 17 N 1.30466 * 125.64276 * 269.68947 * 16 15 5 18 18 C 1.34162 * 109.27004 * 180.26212 * 17 16 15 19 19 C 1.34798 * 108.01669 * 359.97438 * 18 17 16 20 20 Cl 1.73594 * 126.60051 * 180.02562 * 19 18 17 21 21 N 1.35159 * 125.64338 * 89.99541 * 16 15 5 22 22 C 1.46500 * 126.40163 * 359.71457 * 21 16 15 23 23 H 1.08997 * 109.47410 * 300.00183 * 1 2 3 24 24 H 1.09000 * 109.46624 * 60.00108 * 1 2 3 25 25 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47060 * 239.99581 * 2 1 3 27 27 H 1.09002 * 109.46822 * 299.99390 * 3 2 1 28 28 H 1.08997 * 109.47181 * 59.99677 * 3 2 1 29 29 H 1.09006 * 109.46453 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47312 * 57.14693 * 4 2 1 31 31 H 1.08997 * 109.47346 * 297.14091 * 4 2 1 32 32 H 1.09005 * 109.46776 * 280.49824 * 6 5 4 33 33 H 1.08998 * 109.47362 * 40.49176 * 6 5 4 34 34 H 0.97000 * 120.00668 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47241 * 173.95412 * 15 5 4 36 36 H 1.09008 * 109.46467 * 53.95585 * 15 5 4 37 37 H 1.08002 * 125.99576 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46985 * 89.99795 * 22 21 16 39 39 H 1.08998 * 109.47259 * 210.00115 * 22 21 16 40 40 H 1.08994 * 109.47313 * 330.00418 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5073 -0.7814 1.2153 6 6 3.9730 -1.6770 0.1481 7 6 5.4102 -1.3636 -0.1793 8 1 5.9502 -0.6332 0.4049 9 6 6.0356 -2.0092 -1.2247 10 7 7.2897 -1.7354 -1.5108 11 14 5.1017 -3.2730 -2.2349 12 1 4.4345 -2.5984 -3.3771 13 1 6.0493 -4.2946 -2.7483 14 1 4.0791 -3.9305 -1.3822 15 6 4.0478 -1.1899 2.5187 16 6 3.7563 -0.1215 3.5407 17 7 4.5314 0.8881 3.8274 18 6 3.9561 1.6297 4.7860 19 6 2.7781 1.0575 5.1053 20 17 1.6410 1.6209 6.2898 21 7 2.6513 -0.0537 4.3160 22 6 1.5272 -0.9931 4.3117 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9563 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6354 -1.7331 1.2752 31 1 1.7191 -0.1787 2.1385 32 1 3.8936 -2.7117 0.4818 33 1 3.3583 -1.5338 -0.7405 34 1 7.7299 -2.1899 -2.2461 35 1 5.1256 -1.3304 2.4372 36 1 3.5818 -2.1255 2.8281 37 1 4.3647 2.5282 5.2245 38 1 1.7180 -1.7912 5.0292 39 1 0.6131 -0.4674 4.5875 40 1 1.4142 -1.4199 3.3152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000687820382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:02 Heat of formation + Delta-G solvation = 62.108992 kcal Electronic energy + Delta-G solvation = -21335.368400 eV Core-core repulsion = 18212.533119 eV Total energy + Delta-G solvation = -3122.835281 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -42.09401 -37.81994 -36.78948 -34.29573 -34.08297 -32.44981 -30.11001 -27.86951 -27.39500 -26.78547 -26.01825 -23.70668 -21.39070 -21.23400 -19.89499 -19.00364 -17.28767 -16.93988 -16.14723 -15.23311 -15.04550 -14.77046 -14.35761 -13.98800 -13.87420 -13.42659 -13.20628 -12.95233 -12.79430 -12.50087 -12.37942 -12.05305 -11.90357 -11.70949 -11.60842 -11.48624 -11.45900 -10.74959 -10.65129 -10.47915 -10.40379 -10.00565 -9.91149 -9.77940 -9.57979 -9.29307 -8.55518 -8.19920 -7.50030 -6.02989 -4.00442 1.61363 1.89351 2.91885 3.19968 3.26974 3.34223 3.35330 4.41244 4.52694 4.59031 4.70577 4.94407 5.06025 5.13470 5.19682 5.27630 5.29265 5.49117 5.52265 5.66530 5.71593 5.81348 5.91634 6.05790 6.13099 6.14083 6.22818 6.31412 6.42331 6.58608 6.64302 6.76207 6.80948 6.97033 7.10892 7.56220 7.77544 7.88199 8.20166 8.64467 9.10779 9.57798 11.10141 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005131 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.845749 B = 5455.733775 C = 6176.894789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.094 4.094 3 C -0.133 4.133 4 C 0.048 3.952 5 N -0.513 5.513 6 C 0.163 3.837 7 C -0.507 4.507 8 H 0.086 0.914 9 C 0.071 3.929 10 N -0.897 5.897 11 Si 0.870 3.130 12 H -0.276 1.276 13 H -0.286 1.286 14 H -0.270 1.270 15 C 0.143 3.857 16 C 0.256 3.744 17 N -0.459 5.459 18 C 0.009 3.991 19 C -0.001 4.001 20 Cl -0.022 7.022 21 N -0.456 5.456 22 C 0.056 3.944 23 H 0.048 0.952 24 H 0.054 0.946 25 H 0.048 0.952 26 H 0.076 0.924 27 H 0.041 0.959 28 H 0.039 0.961 29 H 0.078 0.922 30 H 0.023 0.977 31 H 0.063 0.937 32 H -0.011 1.011 33 H 0.032 0.968 34 H 0.263 0.737 35 H 0.123 0.877 36 H 0.039 0.961 37 H 0.176 0.824 38 H 0.079 0.921 39 H 0.086 0.914 40 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.114 2.275 11.780 19.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.112 4.112 3 C -0.190 4.190 4 C -0.081 4.081 5 N -0.237 5.237 6 C 0.038 3.962 7 C -0.546 4.546 8 H 0.104 0.896 9 C -0.131 4.131 10 N -0.536 5.536 11 Si 0.697 3.303 12 H -0.202 1.202 13 H -0.212 1.212 14 H -0.194 1.194 15 C 0.013 3.987 16 C -0.006 4.006 17 N -0.177 5.177 18 C -0.142 4.142 19 C -0.141 4.141 20 Cl 0.006 6.994 21 N -0.142 5.142 22 C -0.086 4.086 23 H 0.067 0.933 24 H 0.073 0.927 25 H 0.068 0.932 26 H 0.095 0.905 27 H 0.060 0.940 28 H 0.058 0.942 29 H 0.097 0.903 30 H 0.041 0.959 31 H 0.081 0.919 32 H 0.007 0.993 33 H 0.049 0.951 34 H 0.073 0.927 35 H 0.141 0.859 36 H 0.057 0.943 37 H 0.193 0.807 38 H 0.097 0.903 39 H 0.104 0.896 40 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -14.246 2.798 11.287 18.389 hybrid contribution -1.824 -1.577 0.130 2.415 sum -16.070 1.221 11.417 19.751 Atomic orbital electron populations 1.21831 0.96063 1.00994 1.01341 1.21126 0.93945 0.97691 0.98467 1.21651 1.03534 0.94324 0.99508 1.22445 0.89828 0.97465 0.98315 1.61884 1.05617 1.53428 1.02794 1.20255 0.97643 0.89099 0.89199 1.21041 0.93940 1.23894 1.15692 0.89631 1.24873 0.94744 0.96540 0.96940 1.69891 1.11015 1.42715 1.29933 0.86961 0.80106 0.82081 0.81146 1.20191 1.21221 1.19450 1.20470 1.04030 0.88749 0.85415 1.23467 0.83002 0.98631 0.95533 1.70538 1.29233 1.04116 1.13810 1.22206 0.91463 1.01824 0.98665 1.21667 0.97155 0.95084 1.00202 1.98348 1.60323 1.86940 1.53760 1.45239 1.18245 1.20520 1.30209 1.22324 0.88060 0.93004 1.05207 0.93288 0.92711 0.93240 0.90544 0.94028 0.94203 0.90253 0.95940 0.91854 0.99305 0.95054 0.92686 0.85890 0.94346 0.80661 0.90276 0.89562 0.88270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.76 9.19 37.16 0.34 -1.42 16 2 C -0.09 -1.46 2.88 -90.62 -0.26 -1.72 16 3 C -0.13 -2.17 9.06 37.16 0.34 -1.83 16 4 C 0.05 0.76 2.90 -3.83 -0.01 0.75 16 5 N -0.51 -9.99 3.76 -237.52 -0.89 -10.88 16 6 C 0.16 3.70 3.67 -4.98 -0.02 3.68 16 7 C -0.51 -13.88 9.16 -34.44 -0.32 -14.20 16 8 H 0.09 2.61 7.89 -52.49 -0.41 2.20 16 9 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 10 N -0.90 -27.08 13.96 55.43 0.77 -26.31 16 11 Si 0.87 20.81 27.37 -169.99 -4.65 16.16 16 12 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 13 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 14 H -0.27 -6.14 6.69 56.52 0.38 -5.76 16 15 C 0.14 2.58 5.00 -4.98 -0.02 2.55 16 16 C 0.26 4.37 6.59 -155.34 -1.02 3.35 16 17 N -0.46 -8.56 11.25 -10.76 -0.12 -8.68 16 18 C 0.01 0.14 11.86 -17.75 -0.21 -0.07 16 19 C 0.00 -0.02 7.49 -16.52 -0.12 -0.14 16 20 Cl -0.02 -0.24 28.93 -51.86 -1.50 -1.74 16 21 N -0.46 -6.36 2.75 -117.77 -0.32 -6.69 16 22 C 0.06 0.57 9.75 59.85 0.58 1.15 16 23 H 0.05 0.55 8.14 -51.93 -0.42 0.13 16 24 H 0.05 0.63 8.14 -51.93 -0.42 0.20 16 25 H 0.05 0.56 8.14 -51.93 -0.42 0.13 16 26 H 0.08 1.33 6.28 -51.93 -0.33 1.00 16 27 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 28 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.55 7.69 -51.93 -0.40 1.16 16 30 H 0.02 0.33 7.74 -51.92 -0.40 -0.07 16 31 H 0.06 0.94 4.61 -51.93 -0.24 0.70 16 32 H -0.01 -0.24 7.40 -51.93 -0.38 -0.62 16 33 H 0.03 0.71 5.16 -51.93 -0.27 0.45 16 34 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 35 H 0.12 2.53 7.30 -51.93 -0.38 2.15 16 36 H 0.04 0.60 7.70 -51.92 -0.40 0.20 16 37 H 0.18 2.21 8.06 -52.49 -0.42 1.79 16 38 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.09 0.74 7.92 -51.93 -0.41 0.33 16 40 H 0.10 1.01 4.72 -51.93 -0.25 0.77 16 LS Contribution 331.60 15.07 5.00 5.00 Total: -1.00 -30.68 331.60 -8.53 -39.21 By element: Atomic # 1 Polarization: 5.92 SS G_CDS: -5.99 Total: -0.07 kcal Atomic # 6 Polarization: -5.17 SS G_CDS: -0.83 Total: -6.00 kcal Atomic # 7 Polarization: -52.00 SS G_CDS: -0.56 Total: -52.56 kcal Atomic # 14 Polarization: 20.81 SS G_CDS: -4.65 Total: 16.16 kcal Atomic # 17 Polarization: -0.24 SS G_CDS: -1.50 Total: -1.74 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.68 -8.53 -39.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687820382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.320 kcal (2) G-P(sol) polarization free energy of solvation -30.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 70.641 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.532 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.109 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds