Wall clock time and date at job start Tue Mar 31 2020 05:44:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.53000 * 109.47016 * 2 1 4 4 C 1.52996 * 109.46768 * 119.99883 * 2 1 3 5 5 N 1.46895 * 109.47177 * 177.14099 * 4 2 1 6 6 C 1.46899 * 111.00470 * 291.29218 * 5 4 2 7 7 C 1.50702 * 109.47646 * 160.49861 * 6 5 4 8 8 H 1.07996 * 119.99482 * 4.91389 * 7 6 5 9 9 C 1.37869 * 119.99929 * 184.92353 * 7 6 5 10 10 N 1.31514 * 120.00171 * 179.97438 * 9 7 6 11 11 Si 1.86803 * 120.00242 * 359.97438 * 9 7 6 12 12 H 1.48496 * 109.47032 * 90.00299 * 11 9 7 13 13 H 1.48500 * 109.47307 * 210.00102 * 11 9 7 14 14 H 1.48495 * 109.47165 * 330.00277 * 11 9 7 15 15 C 1.46902 * 111.00414 * 167.33129 * 5 4 2 16 16 C 1.50699 * 109.47257 * 293.95968 * 15 5 4 17 17 N 1.30466 * 125.64276 * 269.68947 * 16 15 5 18 18 C 1.34162 * 109.27004 * 180.26212 * 17 16 15 19 19 C 1.34798 * 108.01669 * 359.97438 * 18 17 16 20 20 Cl 1.73594 * 126.60051 * 180.02562 * 19 18 17 21 21 N 1.35159 * 125.64338 * 89.99541 * 16 15 5 22 22 C 1.46500 * 126.40163 * 359.71457 * 21 16 15 23 23 H 1.08997 * 109.47410 * 300.00183 * 1 2 3 24 24 H 1.09000 * 109.46624 * 60.00108 * 1 2 3 25 25 H 1.08999 * 109.47082 * 179.97438 * 1 2 3 26 26 H 1.09004 * 109.47060 * 239.99581 * 2 1 3 27 27 H 1.09002 * 109.46822 * 299.99390 * 3 2 1 28 28 H 1.08997 * 109.47181 * 59.99677 * 3 2 1 29 29 H 1.09006 * 109.46453 * 180.02562 * 3 2 1 30 30 H 1.09008 * 109.47312 * 57.14693 * 4 2 1 31 31 H 1.08997 * 109.47346 * 297.14091 * 4 2 1 32 32 H 1.09005 * 109.46776 * 280.49824 * 6 5 4 33 33 H 1.08998 * 109.47362 * 40.49176 * 6 5 4 34 34 H 0.97000 * 120.00668 * 179.97438 * 10 9 7 35 35 H 1.08997 * 109.47241 * 173.95412 * 15 5 4 36 36 H 1.09008 * 109.46467 * 53.95585 * 15 5 4 37 37 H 1.08002 * 125.99576 * 180.02562 * 18 17 16 38 38 H 1.09001 * 109.46985 * 89.99795 * 22 21 16 39 39 H 1.08998 * 109.47259 * 210.00115 * 22 21 16 40 40 H 1.08994 * 109.47313 * 330.00418 * 22 21 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7212 1.2492 5 7 3.5073 -0.7814 1.2153 6 6 3.9730 -1.6770 0.1481 7 6 5.4102 -1.3636 -0.1793 8 1 5.9502 -0.6332 0.4049 9 6 6.0356 -2.0092 -1.2247 10 7 7.2897 -1.7354 -1.5108 11 14 5.1017 -3.2730 -2.2349 12 1 4.4345 -2.5984 -3.3771 13 1 6.0493 -4.2946 -2.7483 14 1 4.0791 -3.9305 -1.3822 15 6 4.0478 -1.1899 2.5187 16 6 3.7563 -0.1215 3.5407 17 7 4.5314 0.8881 3.8274 18 6 3.9561 1.6297 4.7860 19 6 2.7781 1.0575 5.1053 20 17 1.6410 1.6209 6.2898 21 7 2.6513 -0.0537 4.3160 22 6 1.5272 -0.9931 4.3117 23 1 -0.3634 0.5138 0.8899 24 1 -0.3632 0.5138 -0.8900 25 1 -0.3633 -1.0277 -0.0005 26 1 1.8934 -0.5139 -0.8900 27 1 1.6767 1.9563 -0.8901 28 1 1.6766 1.9563 0.8899 29 1 3.1301 1.4424 -0.0005 30 1 1.6354 -1.7331 1.2752 31 1 1.7191 -0.1787 2.1385 32 1 3.8936 -2.7117 0.4818 33 1 3.3583 -1.5338 -0.7405 34 1 7.7299 -2.1899 -2.2461 35 1 5.1256 -1.3304 2.4372 36 1 3.5818 -2.1255 2.8281 37 1 4.3647 2.5282 5.2245 38 1 1.7180 -1.7912 5.0292 39 1 0.6131 -0.4674 4.5875 40 1 1.4142 -1.4199 3.3152 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000687820382.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:44:01 Heat of formation + Delta-G solvation = 42.840315 kcal Electronic energy + Delta-G solvation = -21336.203953 eV Core-core repulsion = 18212.533119 eV Total energy + Delta-G solvation = -3123.670834 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 285.130 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -43.26849 -39.23449 -37.78938 -35.67558 -35.18892 -34.46772 -31.55475 -29.59557 -28.44400 -27.92292 -27.20866 -25.35286 -22.88888 -22.52794 -21.10853 -20.34482 -18.99617 -18.36313 -17.37029 -16.55513 -16.43997 -16.27696 -15.72881 -15.53600 -14.97612 -14.70653 -14.45222 -14.37421 -14.08136 -13.88161 -13.57068 -13.29427 -13.16264 -13.07505 -12.92542 -12.74411 -12.51945 -12.43374 -12.26466 -11.86814 -11.77765 -11.67807 -11.46534 -11.21872 -10.99399 -10.70942 -10.69726 -9.37170 -8.98357 -8.20948 -6.23893 0.52778 0.73866 1.38034 1.39366 1.49419 1.89855 1.96351 2.38767 3.09438 3.21078 3.41627 3.72444 3.84555 3.92262 4.09891 4.23397 4.30584 4.36276 4.43802 4.46977 4.55738 4.63447 4.75327 4.82279 4.84813 4.91499 4.97709 5.03860 5.06051 5.15511 5.30337 5.46384 5.49521 5.59000 5.61872 5.91884 6.03096 6.31706 6.66809 6.84586 7.00538 7.38636 8.96411 Molecular weight = 285.13amu Principal moments of inertia in cm(-1) A = 0.019660 B = 0.005131 C = 0.004532 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1423.845749 B = 5455.733775 C = 6176.894789 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.097 4.097 3 C -0.126 4.126 4 C 0.051 3.949 5 N -0.534 5.534 6 C 0.177 3.823 7 C -0.509 4.509 8 H 0.032 0.968 9 C 0.007 3.993 10 N -0.951 5.951 11 Si 0.945 3.055 12 H -0.268 1.268 13 H -0.286 1.286 14 H -0.244 1.244 15 C 0.150 3.850 16 C 0.239 3.761 17 N -0.507 5.507 18 C -0.014 4.014 19 C 0.013 3.987 20 Cl 0.012 6.988 21 N -0.447 5.447 22 C 0.046 3.954 23 H 0.061 0.939 24 H 0.061 0.939 25 H 0.064 0.936 26 H 0.056 0.944 27 H 0.053 0.947 28 H 0.045 0.955 29 H 0.035 0.965 30 H 0.044 0.956 31 H 0.077 0.923 32 H -0.003 1.003 33 H 0.038 0.962 34 H 0.265 0.735 35 H 0.082 0.918 36 H 0.066 0.934 37 H 0.193 0.807 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.216 1.190 12.628 23.025 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.116 4.116 3 C -0.183 4.183 4 C -0.077 4.077 5 N -0.258 5.258 6 C 0.050 3.950 7 C -0.547 4.547 8 H 0.050 0.950 9 C -0.190 4.190 10 N -0.592 5.592 11 Si 0.768 3.232 12 H -0.193 1.193 13 H -0.212 1.212 14 H -0.167 1.167 15 C 0.021 3.979 16 C -0.024 4.024 17 N -0.227 5.227 18 C -0.164 4.164 19 C -0.128 4.128 20 Cl 0.040 6.960 21 N -0.132 5.132 22 C -0.094 4.094 23 H 0.080 0.920 24 H 0.081 0.919 25 H 0.083 0.917 26 H 0.074 0.926 27 H 0.073 0.927 28 H 0.064 0.936 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.095 0.905 32 H 0.015 0.985 33 H 0.056 0.944 34 H 0.073 0.927 35 H 0.100 0.900 36 H 0.084 0.916 37 H 0.210 0.790 38 H 0.118 0.882 39 H 0.126 0.874 40 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges -18.395 1.708 12.164 22.120 hybrid contribution -0.547 -1.096 0.022 1.225 sum -18.942 0.612 12.186 22.532 Atomic orbital electron populations 1.21744 0.92776 1.02360 1.02404 1.21168 0.96626 0.96358 0.97397 1.21554 1.00612 0.95723 1.00451 1.22528 0.87106 0.98903 0.99128 1.61679 1.08382 1.53050 1.02731 1.19953 0.94479 0.89886 0.90668 1.21253 0.96401 1.22272 1.14811 0.94976 1.25841 0.95598 0.99115 0.98419 1.70077 1.13304 1.44757 1.31102 0.85758 0.79010 0.78935 0.79475 1.19301 1.21172 1.16684 1.20219 1.01811 0.90527 0.85366 1.22991 0.84420 0.98537 0.96480 1.70425 1.31214 1.05490 1.15521 1.22546 0.92460 1.02639 0.98748 1.21765 0.97088 0.94233 0.99743 1.98365 1.58878 1.86529 1.52236 1.45328 1.18108 1.20793 1.28977 1.22673 0.87438 0.93157 1.06145 0.91988 0.91948 0.91722 0.92564 0.92748 0.93553 0.94621 0.93795 0.90490 0.98507 0.94440 0.92654 0.90004 0.91612 0.79019 0.88151 0.87363 0.88041 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.77 9.19 71.98 0.66 -2.11 16 2 C -0.10 -2.81 2.88 -10.79 -0.03 -2.84 16 3 C -0.13 -4.05 9.06 71.98 0.65 -3.39 16 4 C 0.05 1.50 2.90 86.30 0.25 1.75 16 5 N -0.53 -20.93 3.76 -905.37 -3.40 -24.33 16 6 C 0.18 8.00 3.67 85.56 0.31 8.31 16 7 C -0.51 -29.21 9.16 25.60 0.23 -28.98 16 8 H 0.03 2.13 7.89 -2.91 -0.02 2.11 16 9 C 0.01 0.40 5.47 84.65 0.46 0.87 16 10 N -0.95 -60.16 13.96 21.44 0.30 -59.86 16 11 Si 0.94 43.07 27.37 68.60 1.88 44.95 16 12 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 13 H -0.29 -12.93 7.11 99.48 0.71 -12.23 16 14 H -0.24 -10.00 6.69 99.48 0.67 -9.33 16 15 C 0.15 5.52 5.00 85.56 0.43 5.95 16 16 C 0.24 8.17 6.59 138.10 0.91 9.08 16 17 N -0.51 -19.59 11.25 -187.95 -2.11 -21.70 16 18 C -0.01 -0.42 11.86 83.55 0.99 0.57 16 19 C 0.01 0.33 7.49 83.11 0.62 0.95 16 20 Cl 0.01 0.22 28.93 -2.72 -0.08 0.14 16 21 N -0.45 -11.59 2.75 -526.53 -1.45 -13.04 16 22 C 0.05 0.77 9.75 127.77 1.25 2.01 16 23 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 24 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 25 H 0.06 1.15 8.14 -2.39 -0.02 1.14 16 26 H 0.06 1.87 6.28 -2.39 -0.01 1.85 16 27 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 28 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 29 H 0.03 1.44 7.69 -2.38 -0.02 1.42 16 30 H 0.04 1.13 7.74 -2.38 -0.02 1.12 16 31 H 0.08 2.07 4.61 -2.39 -0.01 2.06 16 32 H 0.00 -0.12 7.40 -2.38 -0.02 -0.14 16 33 H 0.04 1.67 5.16 -2.39 -0.01 1.66 16 34 H 0.26 15.61 8.31 -92.71 -0.77 14.84 16 35 H 0.08 3.64 7.30 -2.39 -0.02 3.63 16 36 H 0.07 1.99 7.70 -2.38 -0.02 1.97 16 37 H 0.19 4.82 8.06 -2.91 -0.02 4.80 16 38 H 0.10 1.29 8.14 -2.39 -0.02 1.27 16 39 H 0.11 1.34 7.92 -2.39 -0.02 1.32 16 40 H 0.10 1.67 4.72 -2.39 -0.01 1.65 16 Total: -1.00 -71.29 331.60 2.86 -68.43 By element: Atomic # 1 Polarization: 12.25 SS G_CDS: 0.99 Total: 13.24 kcal Atomic # 6 Polarization: -14.57 SS G_CDS: 6.74 Total: -7.83 kcal Atomic # 7 Polarization: -112.27 SS G_CDS: -6.67 Total: -118.93 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.88 Total: 44.95 kcal Atomic # 17 Polarization: 0.22 SS G_CDS: -0.08 Total: 0.14 kcal Total: -71.29 2.86 -68.43 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000687820382.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.269 kcal (2) G-P(sol) polarization free energy of solvation -71.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.977 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.429 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.840 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds