Wall clock time and date at job start Tue Mar 31 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.50697 * 109.61800 * 2 1 4 4 O 1.20828 * 120.00119 * 239.77368 * 3 2 1 5 5 O 1.34229 * 120.00072 * 59.77644 * 3 2 1 6 6 C 1.45206 * 117.00098 * 180.02562 * 5 3 2 7 7 C 1.50697 * 109.47053 * 180.02562 * 6 5 3 8 8 O 1.21271 * 120.00080 * 359.97438 * 7 6 5 9 9 N 1.34779 * 119.99598 * 180.02562 * 7 6 5 10 10 C 1.46499 * 119.99640 * 179.97438 * 9 7 6 11 11 C 1.50697 * 109.47099 * 179.97438 * 10 9 7 12 12 H 1.07996 * 120.00231 * 0.02562 * 11 10 9 13 13 C 1.37883 * 119.99961 * 180.02562 * 11 10 9 14 14 N 1.31508 * 120.00370 * 0.02562 * 13 11 10 15 15 Si 1.86806 * 119.99844 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47288 * 59.99869 * 15 13 11 17 17 H 1.48492 * 109.47093 * 180.02562 * 15 13 11 18 18 H 1.48507 * 109.47038 * 300.00131 * 15 13 11 19 19 C 1.53178 * 109.54524 * 239.77536 * 2 1 3 20 20 C 1.53093 * 109.16255 * 297.11741 * 19 2 1 21 21 O 1.42904 * 109.42351 * 302.38111 * 20 19 2 22 22 C 1.42930 * 114.08305 * 61.15476 * 21 20 19 23 23 C 1.53096 * 109.41898 * 298.84863 * 22 21 20 24 24 H 1.08995 * 109.47136 * 180.22581 * 1 2 3 25 25 H 1.08999 * 109.47065 * 300.22323 * 1 2 3 26 26 H 1.08999 * 109.47117 * 60.21975 * 1 2 3 27 27 H 1.08998 * 109.46751 * 300.00123 * 6 5 3 28 28 H 1.08998 * 109.46793 * 59.99689 * 6 5 3 29 29 H 0.96992 * 120.00489 * 359.97438 * 9 7 6 30 30 H 1.08997 * 109.47558 * 300.00164 * 10 9 7 31 31 H 1.09007 * 109.47259 * 59.99795 * 10 9 7 32 32 H 0.96998 * 120.00147 * 179.97438 * 14 13 11 33 33 H 1.09000 * 109.52619 * 177.21000 * 19 2 1 34 34 H 1.08997 * 109.57176 * 57.05194 * 19 2 1 35 35 H 1.09002 * 109.48198 * 62.37219 * 20 19 2 36 36 H 1.08999 * 109.48029 * 182.39833 * 20 19 2 37 37 H 1.09003 * 109.47243 * 178.86599 * 22 21 20 38 38 H 1.08992 * 109.48518 * 58.83967 * 22 21 20 39 39 H 1.08999 * 109.52155 * 297.70346 * 23 22 21 40 40 H 1.09004 * 109.51758 * 177.51891 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0359 1.4195 0.0000 4 8 2.7350 1.8117 -0.9041 5 8 1.7101 2.2482 1.0044 6 6 2.2325 3.6014 0.9385 7 6 1.7662 4.3791 2.1421 8 8 1.0625 3.8456 2.9733 9 7 2.1304 5.6678 2.2942 10 6 1.6766 6.4239 3.4640 11 6 2.2189 7.8283 3.3956 12 1 2.8391 8.1278 2.5638 13 6 1.9232 8.7309 4.3951 14 7 1.1683 8.3662 5.4083 15 14 2.5948 10.4720 4.3099 16 1 2.1038 11.1321 3.0736 17 1 2.1360 11.2381 5.4964 18 1 4.0791 10.4296 4.2924 19 6 2.0424 -0.7267 -1.2473 20 6 1.5894 -2.1882 -1.1991 21 8 2.0735 -2.7965 -0.0001 22 6 1.5893 -2.1882 1.1992 23 6 2.0424 -0.7266 1.2474 24 1 -0.3633 -1.0276 0.0041 25 1 -0.3633 0.5173 0.8880 26 1 -0.3633 0.5104 -0.8919 27 1 3.3220 3.5700 0.9264 28 1 1.8729 4.0858 0.0307 29 1 2.6929 6.0945 1.6292 30 1 0.5871 6.4550 3.4764 31 1 2.0366 5.9396 4.3718 32 1 0.9606 9.0011 6.1116 33 1 3.1313 -0.6835 -1.2725 34 1 1.6382 -0.2493 -2.1399 35 1 0.5004 -2.2319 -1.2148 36 1 1.9871 -2.7207 -2.0630 37 1 1.9872 -2.7207 2.0631 38 1 0.5004 -2.2319 1.2151 39 1 3.1312 -0.6834 1.2726 40 1 1.6372 -0.2489 2.1395 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000726840058.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:39:31 Heat of formation + Delta-G solvation = -181.740559 kcal Electronic energy + Delta-G solvation = -22583.958400 eV Core-core repulsion = 18977.547094 eV Total energy + Delta-G solvation = -3606.411307 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 285.145 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -41.21680 -39.57642 -38.64735 -36.46019 -35.07717 -34.28024 -32.43819 -31.51653 -29.38072 -28.25963 -26.83506 -25.49227 -23.97541 -22.74560 -21.75458 -19.98058 -19.31234 -17.85466 -17.52878 -16.83037 -16.65421 -16.30527 -15.73974 -15.34786 -15.25490 -15.08171 -14.86535 -14.49650 -14.28482 -13.86487 -13.30183 -12.88559 -12.84115 -12.69260 -12.33627 -12.30798 -12.01286 -11.80653 -11.67550 -11.64558 -11.05696 -10.96241 -10.92853 -10.81813 -10.71545 -10.53450 -10.36902 -9.80704 -9.48307 -9.21091 -8.80437 -8.02176 -6.21853 -4.29521 2.04258 2.34197 3.13900 3.22552 3.27556 3.28923 3.54242 3.87754 4.12698 4.28945 4.32277 4.43918 4.60735 4.71341 4.83568 4.92149 5.04922 5.14098 5.18918 5.20160 5.22653 5.30395 5.30791 5.39289 5.46584 5.48169 5.60756 5.74861 5.80276 5.97430 6.29718 6.83455 7.19220 7.27175 7.42691 7.55350 7.63511 7.89402 8.46597 8.68003 8.92837 9.36917 10.88237 Molecular weight = 285.15amu Principal moments of inertia in cm(-1) A = 0.046043 B = 0.002724 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 607.986469 B =10278.347041 C =10586.200896 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.049 4.049 3 C 0.470 3.530 4 O -0.509 6.509 5 O -0.324 6.324 6 C 0.047 3.953 7 C 0.500 3.500 8 O -0.534 6.534 9 N -0.706 5.706 10 C 0.252 3.748 11 C -0.547 4.547 12 H 0.064 0.936 13 C 0.065 3.935 14 N -0.885 5.885 15 Si 0.905 3.095 16 H -0.275 1.275 17 H -0.285 1.285 18 H -0.275 1.275 19 C -0.136 4.136 20 C 0.061 3.939 21 O -0.382 6.382 22 C 0.062 3.938 23 C -0.147 4.147 24 H 0.073 0.927 25 H 0.079 0.921 26 H 0.064 0.936 27 H 0.096 0.904 28 H 0.096 0.904 29 H 0.393 0.607 30 H 0.029 0.971 31 H 0.029 0.971 32 H 0.267 0.733 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.056 0.944 36 H 0.099 0.901 37 H 0.100 0.900 38 H 0.058 0.942 39 H 0.078 0.922 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.453 -19.234 -12.757 23.084 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.051 4.051 3 C 0.312 3.688 4 O -0.396 6.396 5 O -0.239 6.239 6 C -0.031 4.031 7 C 0.283 3.717 8 O -0.411 6.411 9 N -0.357 5.357 10 C 0.132 3.868 11 C -0.585 4.585 12 H 0.082 0.918 13 C -0.139 4.139 14 N -0.522 5.522 15 Si 0.732 3.268 16 H -0.200 1.200 17 H -0.210 1.210 18 H -0.200 1.200 19 C -0.174 4.174 20 C -0.015 4.015 21 O -0.301 6.301 22 C -0.015 4.015 23 C -0.185 4.185 24 H 0.092 0.908 25 H 0.098 0.902 26 H 0.083 0.917 27 H 0.114 0.886 28 H 0.114 0.886 29 H 0.226 0.774 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.077 0.923 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.074 0.926 36 H 0.117 0.883 37 H 0.118 0.882 38 H 0.077 0.923 39 H 0.097 0.903 40 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 0.181 -19.528 -12.196 23.024 hybrid contribution 0.597 1.760 -0.418 1.905 sum 0.778 -17.767 -12.613 21.803 Atomic orbital electron populations 1.22012 0.91282 1.03374 1.04045 1.20537 0.98158 0.87891 0.98467 1.23649 0.77459 0.88353 0.79295 1.90655 1.35551 1.77128 1.36309 1.86557 1.68644 1.22463 1.46219 1.22886 1.00318 0.80289 0.99568 1.19870 0.82066 0.83138 0.86640 1.90702 1.37484 1.69210 1.43751 1.46371 1.51602 1.10146 1.27539 1.19170 0.95833 0.89741 0.82100 1.21170 1.33263 0.95528 1.08519 0.91821 1.24951 0.94826 0.99261 0.94908 1.69957 1.35981 1.35843 1.10412 0.86447 0.79301 0.83328 0.77679 1.20021 1.21019 1.20020 1.22165 1.03001 0.95781 0.96451 1.22647 0.98656 0.92180 0.88061 1.87957 1.71905 1.56454 1.13767 1.22645 0.98828 0.92094 0.87906 1.22293 1.02539 0.96559 0.97124 0.90804 0.90206 0.91685 0.88580 0.88575 0.77430 0.95259 0.95257 0.92287 0.89909 0.89834 0.92570 0.88329 0.88153 0.92341 0.90349 0.88692 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.30 7.87 37.16 0.29 -1.01 16 2 C -0.05 -0.50 0.72 -155.48 -0.11 -0.61 16 3 C 0.47 6.36 6.56 36.00 0.24 6.60 16 4 O -0.51 -7.74 15.72 -18.75 -0.29 -8.04 16 5 O -0.32 -5.02 9.59 -45.90 -0.44 -5.46 16 6 C 0.05 0.71 5.94 36.00 0.21 0.93 16 7 C 0.50 9.90 7.91 -10.99 -0.09 9.82 16 8 O -0.53 -12.82 16.50 -14.10 -0.23 -13.05 16 9 N -0.71 -14.49 5.55 -61.48 -0.34 -14.83 16 10 C 0.25 6.53 5.43 -5.20 -0.03 6.51 16 11 C -0.55 -14.56 9.28 -34.44 -0.32 -14.88 16 12 H 0.06 1.58 7.60 -52.49 -0.40 1.18 16 13 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 14 N -0.88 -25.71 13.29 55.43 0.74 -24.98 16 15 Si 0.91 20.58 29.54 -169.99 -5.02 15.55 16 16 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.27 -6.12 7.11 56.52 0.40 -5.72 16 19 C -0.14 -1.22 4.23 -26.59 -0.11 -1.33 16 20 C 0.06 0.45 6.57 37.21 0.24 0.70 16 21 O -0.38 -3.57 10.77 -35.23 -0.38 -3.95 16 22 C 0.06 0.49 6.57 37.21 0.24 0.73 16 23 C -0.15 -1.39 4.86 -26.59 -0.13 -1.52 16 24 H 0.07 0.49 5.01 -51.93 -0.26 0.23 16 25 H 0.08 0.79 8.11 -51.93 -0.42 0.36 16 26 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 27 H 0.10 1.28 8.13 -51.93 -0.42 0.86 16 28 H 0.10 1.28 8.13 -51.93 -0.42 0.85 16 29 H 0.39 6.78 8.32 -40.82 -0.34 6.44 16 30 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 31 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.27 7.30 8.31 -40.82 -0.34 6.96 16 33 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 34 H 0.08 0.71 8.14 -51.93 -0.42 0.29 16 35 H 0.06 0.34 6.61 -51.93 -0.34 0.00 16 36 H 0.10 0.59 8.14 -51.93 -0.42 0.16 16 37 H 0.10 0.67 8.14 -51.93 -0.42 0.25 16 38 H 0.06 0.39 6.60 -51.93 -0.34 0.05 16 39 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 LS Contribution 333.63 15.07 5.03 5.03 Total: -1.00 -33.24 333.63 -6.48 -39.73 By element: Atomic # 1 Polarization: 8.29 SS G_CDS: -5.88 Total: 2.41 kcal Atomic # 6 Polarization: 7.25 SS G_CDS: 0.35 Total: 7.59 kcal Atomic # 7 Polarization: -40.20 SS G_CDS: 0.40 Total: -39.80 kcal Atomic # 8 Polarization: -29.16 SS G_CDS: -1.35 Total: -30.50 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -5.02 Total: 15.55 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -33.24 -6.48 -39.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000726840058.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -142.014 kcal (2) G-P(sol) polarization free energy of solvation -33.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -175.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.727 kcal (6) G-S(sol) free energy of system = (1) + (5) -181.741 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds